Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002735.1

Orthogroup ID

OG0012243

Physical Location & Seq

Genomic Coordinates Reverse (-)

81336 .. 85340

Gene Structure 4005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002735.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atggaggccagtaacgaagagaagaagcccacaaagcctccatccgttctgggtaaagatgacagcaaacctgtgcttcaagacccaattctgacgtcggacccaattgagacagaggaaggcttgacaaacttttcagacactgtgacagctctgaaaaaccagttcgatataggttcacctgctgatgtcctacttcttgacttggatactttgtacaaggaattggatgagatggagaagataaggaagagtcaagatgaggaaaagatgttttatgctgcatttgaatatttgtactccgactgtgtgaaaaaccgagagagtgtgaaaagcagggaggacagggaagtagcggataaatacatgcctatttctcatttcattgttggtattttgagctatgagatattagatacagacaaagtcaacaagaaattcagagaggagaagttcaagatcaagctattggaatcatccatggagaacttgagagatatttgcagaagcatggggatggaatcagcgattaagaggaagaaaatgatcctcaagcagaggttgaagtttcctccagctttgaatcagttcaccaagacccttgacaaaaacctcgctacaagcctgttccagatgcttttgaagtacaggcatgaggacaaagtagagaagagtgtcttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

227

Amino Acids

26.41

Weight (kDa)

5.68

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20480
malus_domestica	MD03G1011000.v1.1
prunus_persica	Prupe.2G113800_v2.0.a1 Prupe.6G011500_v2.0.a1
pyrus_communis	pycom03g00980
rosa_chinensis	RchiOBHm_Chr5g0081401
rosa_laevigata	RLG00000019067 RLG00000021682
rosa_multiflora	Rmu_sc0002735.1_g000021 Rmu_sc0005344.1_g000012
rosa_roxburghii	Rroxscaffold_1G00002140 Rroxscaffold_2G00083930
rosa_rugosa	Rorug05G0476100
rosa_samantha	Rh2AG593500 Rh2BG605100 Rh2CG575900 Rh5BG552000
rosa_wichuraiana	Rw2G049420 Rw5G049060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	190
AatII	GACGTC	1 cut(s)	98
Acc36I	ACCTGC	1 cut(s)	190
AciI	CCGC	1 cut(s)	356
AclWI	GGATC	1 cut(s)	541
AcsI	RAATTY	1 cut(s)	437
AcyI	GRCGYC	1 cut(s)	95
AfaI	GTAC	3 cut(s)	218, 299, 647
AgsI	TTSAA	6 cut(s)	80, 290, 457, 565, 583, 643
AluBI	AGCT	4 cut(s)	152, 402, 466, 578
AluI	AGCT	4 cut(s)	152, 402, 466, 578
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	1 cut(s)	541
AlwNI	CAGNNNCTG	1 cut(s)	143
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	437
Asp700I	GAANNNNTTC	1 cut(s)	587
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	2 cut(s)	171, 583
AvaII	GGWCC	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	3 cut(s)	49, 229, 511
BciVI	GTATCC	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	104
BfuAI	ACCTGC	1 cut(s)	190
BfuI	GTATCC	1 cut(s)	202
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	102
BmsI	GCATC	1 cut(s)	624
BpmI	CTGGAG	1 cut(s)	558
BpuEI	CTTGAG	2 cut(s)	511, 536
BsaHI	GRCGYC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	480
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bse1I	ACTGG	2 cut(s)	9, 163
BseDI	CCNNGG	1 cut(s)	480
BseGI	GGATG	4 cut(s)	41, 235, 476, 522
BseNI	ACTGG	2 cut(s)	9, 163
BseRI	GAGGAG	1 cut(s)	461
BseXI	GCAGC	1 cut(s)	268
BshFI	GGCC	1 cut(s)	8
BsmAI	GTCTC	1 cut(s)	104
BsnI	GGCC	1 cut(s)	8
Bsp1407I	TGTACA	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	459, 546
Bsp19I	CCATGG	1 cut(s)	480
BspACI	CCGC	1 cut(s)	356
BspANI	GGCC	1 cut(s)	8
BspLI	GGNNCC	1 cut(s)	102
BspMI	ACCTGC	1 cut(s)	190
BspPI	GGATC	1 cut(s)	541
BsrGI	TGTACA	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	9, 163
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	2 cut(s)	459, 546
BssNI	GRCGYC	1 cut(s)	95
BssT1I	CCWWGG	1 cut(s)	480
Bst4CI	ACNGT	2 cut(s)	145, 308
Bst6I	CTCTTC	3 cut(s)	12, 245, 665
BstACI	GRCGYC	1 cut(s)	95
BstAUI	TGTACA	1 cut(s)	216
BstDSI	CCRYGG	1 cut(s)	480
BstF5I	GGATG	4 cut(s)	41, 235, 476, 522
BstKTI	GATC	2 cut(s)	462, 549
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	2 cut(s)	459, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BstNSI	RCATGY	1 cut(s)	370
BstV1I	GCAGC	1 cut(s)	268
BsuI	GTATCC	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	480
BtsCI	GGATG	4 cut(s)	41, 235, 476, 522
BtsIMutI	CAGTG	1 cut(s)	141
BveI	ACCTGC	1 cut(s)	190
CaiI	CAGNNNCTG	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	100
Csp6I	GTAC	3 cut(s)	217, 298, 646
CviAII	CATG	4 cut(s)	367, 481, 511, 653
CviJI	RGCY	9 cut(s)	8, 28, 37, 123, 152, 402, 466, 578, 624
CviKI_1	RGCY	9 cut(s)	8, 28, 37, 123, 152, 402, 466, 578, 624
CviQI	GTAC	3 cut(s)	217, 298, 646
DpnI	GATC	2 cut(s)	461, 548
DpnII	GATC	2 cut(s)	459, 546
Eam1104I	CTCTTC	3 cut(s)	12, 245, 665
EarI	CTCTTC	3 cut(s)	12, 245, 665
Eco130I	CCWWGG	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	480
FaeI	CATG	4 cut(s)	370, 484, 514, 656
FaiI	YATR	7 cut(s)	173, 279, 368, 405, 482, 512, 654
FalI	AAGNNNNNCTT	1 cut(s)	662
FatI	CATG	4 cut(s)	366, 480, 510, 652
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	4 cut(s)	28, 242, 463, 529
Fsp4HI	GCNGC	1 cut(s)	282
GluI	GCNGC	1 cut(s)	282
GsuI	CTGGAG	1 cut(s)	558
HaeIII	GGCC	1 cut(s)	8
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	4 cut(s)	370, 484, 514, 656
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	4 cut(s)	253, 473, 521, 583
HphI	GGTGA	2 cut(s)	171, 583
Hpy166II	GTNNAC	3 cut(s)	179, 430, 591
Hpy188I	TCNGA	6 cut(s)	93, 100, 139, 156, 304, 443
Hpy188III	TCNNGA	5 cut(s)	80, 200, 257, 457, 631
Hpy8I	GTNNAC	3 cut(s)	179, 430, 591
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	2 cut(s)	145, 308
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	2 cut(s)	284, 504
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpySE526I	ACGT	1 cut(s)	95
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	4 cut(s)	370, 484, 514, 656
Kzo9I	GATC	2 cut(s)	459, 546
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	1 cut(s)	624
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	2 cut(s)	11, 145
MalI	GATC	2 cut(s)	461, 548
MboI	GATC	2 cut(s)	459, 546
MboII	GAAGA	6 cut(s)	29, 34, 253, 262, 550, 682
MfeI	CAATTG	1 cut(s)	105
MluCI	AATT	4 cut(s)	87, 105, 224, 437
MlyI	GAGTC	1 cut(s)	262
MmeI	TCCRAC	2 cut(s)	78, 327
MroXI	GAANNNNTTC	1 cut(s)	587
MseI	TTAA	1 cut(s)	531
MslI	CAYNNNNRTG	1 cut(s)	515
MunI	CAATTG	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	34
NcoI	CCATGG	1 cut(s)	480
NdeII	GATC	2 cut(s)	459, 546
NlaIII	CATG	4 cut(s)	370, 484, 514, 656
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	145
NspI	RCATGY	1 cut(s)	370
PaqCI	CACCTGC	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	587
PfeI	GAWTC	3 cut(s)	473, 521, 583
PflFI	GACNNNGTC	1 cut(s)	425
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	100
PstNI	CAGNNNCTG	1 cut(s)	143
PsyI	GACNNNGTC	1 cut(s)	425
RsaI	GTAC	3 cut(s)	218, 299, 647
RsaNI	GTAC	3 cut(s)	217, 298, 646
RseI	CAYNNNNRTG	1 cut(s)	515
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	2 cut(s)	459, 546
Sau96I	GGNCC	1 cut(s)	100
SchI	GAGTC	1 cut(s)	262
SfaNI	GCATC	1 cut(s)	624
SinI	GGWCC	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	515
SmlI	CTYRAG	2 cut(s)	490, 551
SmoI	CTYRAG	2 cut(s)	490, 551
Sse9I	AATT	4 cut(s)	87, 105, 224, 437
SsiI	CCGC	1 cut(s)	356
SspI	AATATT	1 cut(s)	293
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	2 cut(s)	145, 308
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	1 cut(s)	168
TasI	AATT	4 cut(s)	87, 105, 224, 437
TatI	WGTACW	3 cut(s)	216, 297, 645
TfiI	GAWTC	3 cut(s)	473, 521, 583
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	373
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	148
Tth111I	GACNNNGTC	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	100
XapI	RAATTY	1 cut(s)	437
XceI	RCATGY	1 cut(s)	370
XmnI	GAANNNNTTC	1 cut(s)	587
ZraI	GACGTC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.