Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0012243

Physical Location & Seq

Genomic Coordinates Reverse (-)

82479644 .. 82480381

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG593500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGAAGACAGGTATTCTGATTCCAGATGCTATACTATTTCAAGTAATATGAAGTTATTGATTCTTTCCTTTCTCCTTCTTGAAGTTTTCACGAAGCCAACGCTGCGCATTCTAATTGTCAGCGATGATATGAGTCTCAGTGAATTAATGATCGAAGCCCTGGGTGAATATGAAGTAAGGGACCAGCAAGATGCTGATTTTATGTTGCTGCATCAGTTGACAAACTTTTTAGACATTGTGACAGCTCTGAAAAACCAGTTTGATATAGGTTCACCTGCTGATATCCTACTTCTTGACTCGGATACTTTGTACAAGGAATTGGATGAGATGGAGAAGATAAGGAAGAGTCAAGATGAGGAAAAGATGGTCTGGAGTATTGCGGCACCTGAATCAGCTGCTGTATATGCCTTTTATGCTGCATTTGAATATGTGTACTCCGACTATGTGAAAAACCGAGAGAGTGTGAAAAGCAGGGAGGACAGGGATGTAGCACATAAATACATGCCTATTTCTCATTTCATTGTTGGTATTTCGAGCTATGAGATATCAGATACAGACAAAGTCAACAAGAAATTCATAGAGGAGAAGTTCAAGATGAGAATATTTGGAGAAACCTCTATTGTTCAAAAGAGTTTAAATTATGAGAAGATGTTGAAGATTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

221

Amino Acids

25.78

Weight (kDa)

4.79

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20480
malus_domestica	MD03G1011000.v1.1
prunus_persica	Prupe.2G113800_v2.0.a1 Prupe.6G011500_v2.0.a1
pyrus_communis	pycom03g00980
rosa_chinensis	RchiOBHm_Chr5g0081401
rosa_laevigata	RLG00000019067 RLG00000021682
rosa_multiflora	Rmu_sc0002735.1_g000021 Rmu_sc0005344.1_g000012
rosa_roxburghii	Rroxscaffold_1G00002140 Rroxscaffold_2G00083930
rosa_rugosa	Rorug05G0476100
rosa_samantha	Rh2AG593500 Rh2BG605100 Rh2CG575900 Rh5BG552000
rosa_wichuraiana	Rw2G049420 Rw5G049060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	664
AarI	CACCTGC	1 cut(s)	283
Acc16I	TGCGCA	1 cut(s)	107
Acc36I	ACCTGC	1 cut(s)	283
AccB1I	GGYRCC	1 cut(s)	382
AciI	CCGC	1 cut(s)	380
AcsI	RAATTY	1 cut(s)	572
AfaI	GTAC	2 cut(s)	311, 434
AgsI	TTSAA	6 cut(s)	42, 83, 425, 592, 626, 655
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	3 cut(s)	245, 395, 537
AluI	AGCT	3 cut(s)	245, 395, 537
Alw26I	GTCTC	1 cut(s)	140
AlwNI	CAGNNNCTG	1 cut(s)	398
ApeKI	GCWGC	4 cut(s)	103, 208, 395, 416
ApoI	RAATTY	1 cut(s)	572
AseI	ATTAAT	1 cut(s)	146
AspLEI	GCGC	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	2 cut(s)	176, 264
AvaII	GGWCC	1 cut(s)	181
BanI	GGYRCC	1 cut(s)	382
BbsI	GAAGAC	1 cut(s)	12
BbvI	GCAGC	4 cut(s)	90, 195, 382, 403
BccI	CCATC	2 cut(s)	322, 358
BciT130I	CCWGG	1 cut(s)	161
BciVI	GTATCC	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	140
BfuAI	ACCTGC	1 cut(s)	283
BfuI	GTATCC	1 cut(s)	295
BisI	GCNGC	5 cut(s)	104, 209, 381, 396, 417
BlsI	GCNGC	5 cut(s)	105, 210, 382, 397, 418
Bme1390I	CCNGG	1 cut(s)	161
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	2 cut(s)	182, 384
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	3 cut(s)	17, 181, 220
BpiI	GAAGAC	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	391
BsaJI	CCNNGG	2 cut(s)	159, 160
Bse1I	ACTGG	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	2 cut(s)	159, 160
BseGI	GGATG	2 cut(s)	328, 490
BseMII	CTCAG	1 cut(s)	151
BseNI	ACTGG	1 cut(s)	256
BseRI	GAGGAG	1 cut(s)	596
BseXI	GCAGC	4 cut(s)	90, 195, 382, 403
BshNI	GGYRCC	1 cut(s)	382
BslFI	GGGAC	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	108
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	1 cut(s)	150
BspACI	CCGC	1 cut(s)	380
BspCNI	CTCAG	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	182, 384
BspMI	ACCTGC	1 cut(s)	283
BspT107I	GGYRCC	1 cut(s)	382
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	2 cut(s)	159, 160
BssMI	GATC	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	338
BstAUI	TGTACA	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	137
BstF5I	GGATG	2 cut(s)	328, 490
BstHHI	GCGC	1 cut(s)	108
BstKTI	GATC	1 cut(s)	153
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	1 cut(s)	150
BstMWI	GCNNNNNNNGC	3 cut(s)	103, 404, 413
BstNI	CCWGG	1 cut(s)	161
BstNSI	RCATGY	1 cut(s)	505
BstSCI	CCNGG	1 cut(s)	159
BstV1I	GCAGC	4 cut(s)	90, 195, 382, 403
BstV2I	GAAGAC	1 cut(s)	12
BsuI	GTATCC	1 cut(s)	295
BtgZI	GCGATG	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	328, 490
BtsIMutI	CAGTG	1 cut(s)	145
BveI	ACCTGC	1 cut(s)	283
CaiI	CAGNNNCTG	1 cut(s)	398
CfoI	GCGC	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	181
Csp6I	GTAC	2 cut(s)	310, 433
CviAII	CATG	1 cut(s)	502
CviJI	RGCY	5 cut(s)	97, 158, 245, 395, 537
CviKI_1	RGCY	5 cut(s)	97, 158, 245, 395, 537
CviQI	GTAC	2 cut(s)	310, 433
DdeI	CTNAG	1 cut(s)	137
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
DraI	TTTAAA	1 cut(s)	636
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
Eco32I	GATATC	2 cut(s)	283, 546
Eco47I	GGWCC	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	159
EcoRV	GATATC	2 cut(s)	283, 546
FaeI	CATG	1 cut(s)	505
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	1 cut(s)	501
Fnu4HI	GCNGC	5 cut(s)	104, 209, 381, 396, 417
FokI	GGATG	2 cut(s)	335, 497
Fsp4HI	GCNGC	5 cut(s)	104, 209, 381, 396, 417
FspI	TGCGCA	1 cut(s)	107
GlaI	GCGC	1 cut(s)	107
GluI	GCNGC	5 cut(s)	104, 209, 381, 396, 417
GsuI	CTGGAG	1 cut(s)	391
HhaI	GCGC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	505
Hin6I	GCGC	1 cut(s)	106
HinP1I	GCGC	1 cut(s)	106
HincII	GTYRAC	2 cut(s)	219, 565
HindII	GTYRAC	2 cut(s)	219, 565
HinfI	GANTC	6 cut(s)	20, 61, 133, 296, 346, 389
HphI	GGTGA	2 cut(s)	176, 264
Hpy166II	GTNNAC	4 cut(s)	219, 272, 433, 565
Hpy188I	TCNGA	5 cut(s)	19, 249, 301, 439, 550
Hpy188III	TCNNGA	7 cut(s)	24, 80, 91, 293, 350, 370, 592
Hpy8I	GTNNAC	4 cut(s)	219, 272, 433, 565
HpyAV	CCTTC	1 cut(s)	86
HpyCH4V	TGCA	2 cut(s)	211, 419
HpyF10VI	GCNNNNNNNGC	3 cut(s)	103, 404, 413
HpyF3I	CTNAG	1 cut(s)	137
Hsp92II	CATG	1 cut(s)	505
HspAI	GCGC	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	150
Lsp1109I	GCAGC	4 cut(s)	90, 195, 382, 403
LweI	GCATC	3 cut(s)	17, 181, 220
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	1 cut(s)	152
MboI	GATC	1 cut(s)	150
MboII	GAAGA	4 cut(s)	17, 346, 355, 658
MluCI	AATT	5 cut(s)	114, 143, 317, 572, 637
MlyI	GAGTC	3 cut(s)	142, 290, 355
MmeI	TCCRAC	1 cut(s)	462
MnlI	CCTC	4 cut(s)	349, 469, 574, 625
MseI	TTAA	2 cut(s)	146, 635
MspA1I	CMGCKG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	161
Mva1269I	GAATGC	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	3 cut(s)	103, 404, 413
NdeII	GATC	1 cut(s)	150
NlaIII	CATG	1 cut(s)	505
NlaIV	GGNNCC	2 cut(s)	182, 384
NmuCI	GTSAC	1 cut(s)	238
NsbI	TGCGCA	1 cut(s)	107
NspI	RCATGY	1 cut(s)	505
PaqCI	CACCTGC	1 cut(s)	283
PasI	CCCWGGG	1 cut(s)	160
PctI	GAATGC	1 cut(s)	108
PfeI	GAWTC	3 cut(s)	20, 61, 389
PflFI	GACNNNGTC	1 cut(s)	560
PkrI	GCNGC	5 cut(s)	105, 210, 382, 397, 418
PleI	GAGTC	3 cut(s)	141, 290, 354
PpsI	GAGTC	3 cut(s)	141, 290, 354
PshBI	ATTAAT	1 cut(s)	146
PsiI	TTATAA	1 cut(s)	664
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	2 cut(s)	182, 384
PspPI	GGNCC	1 cut(s)	181
PstNI	CAGNNNCTG	1 cut(s)	398
PsyI	GACNNNGTC	1 cut(s)	560
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	2 cut(s)	311, 434
RsaNI	GTAC	2 cut(s)	310, 433
SaqAI	TTAA	2 cut(s)	146, 635
SatI	GCNGC	5 cut(s)	104, 209, 381, 396, 417
Sau3AI	GATC	1 cut(s)	150
Sau96I	GGNCC	1 cut(s)	181
SchI	GAGTC	3 cut(s)	142, 290, 355
ScrFI	CCNGG	1 cut(s)	161
SetI	ASST	8 cut(s)	14, 247, 271, 277, 388, 397, 539, 617
SfaNI	GCATC	3 cut(s)	17, 181, 220
SinI	GGWCC	1 cut(s)	181
Sse9I	AATT	5 cut(s)	114, 143, 317, 572, 637
SsiI	CCGC	1 cut(s)	380
SspI	AATATT	1 cut(s)	603
StyD4I	CCNGG	1 cut(s)	159
TaqI	TCGA	2 cut(s)	153, 533
TasI	AATT	5 cut(s)	114, 143, 317, 572, 637
TatI	WGTACW	2 cut(s)	309, 432
TauI	GCSGC	1 cut(s)	383
TfiI	GAWTC	3 cut(s)	20, 61, 389
Tru1I	TTAA	2 cut(s)	146, 635
Tru9I	TTAA	2 cut(s)	146, 635
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	4 cut(s)	103, 208, 395, 416
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	4 cut(s)	65, 186, 508, 565
TspRI	CASTG	1 cut(s)	145
Tth111I	GACNNNGTC	1 cut(s)	560
VpaK11BI	GGWCC	1 cut(s)	181
VspI	ATTAAT	1 cut(s)	146
XapI	RAATTY	1 cut(s)	572
XceI	RCATGY	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.