Rorug05G0476100

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
65520970 .. 65521233
264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0476100.1

Sequence Viewer

Length: 264 bp
ATGGAGTTTCTGGCTTTGGTTTATGAGTATTTAAGTAATGGGAGCTTGGAAGATTGGATTAAGGGCAAGAGGAAAAATGGCGATGGAGCCGGGTTCAGCATTTTGGAGAGATTGAATGTGGCAATTGATGTTGCTTGTGGATTGGATTACCTGCATAATGACTGTGAAGTTCCAGTGGCTCACTGTGATTTGAAGCCAAGCAACATTCTGTTGGACAAAGACATGATTGCAGAGGTTGGAGATTTGGGCTGGCTCAGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.6

Weight (kDa)

4.4

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 83 8.3e-12 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 4 - 83 2.3e-10 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 159
AgsI TTSAA 2 cut(s) 115, 193
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
AlwNI CAGNNNCTG 1 cut(s) 261
AsuC2I CCSGG 1 cut(s) 91
BccI CCATC 1 cut(s) 77
BcnI CCSGG 1 cut(s) 91
BfuAI ACCTGC 1 cut(s) 159
Bme1390I CCNGG 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 1 cut(s) 91
BpuMI CCSGG 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 173
BseNI ACTGG 1 cut(s) 173
BsiSI CCGG 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 159
BsrI ACTGG 1 cut(s) 173
Bst4CI ACNGT 2 cut(s) 164, 185
BstC8I GCNNGC 1 cut(s) 251
BstDEI CTNAG 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 89
BtgZI GCGATG 1 cut(s) 96
BtsIMutI CAGTG 2 cut(s) 180, 181
BveI ACCTGC 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 251
CaiI CAGNNNCTG 1 cut(s) 261
CviAII CATG 1 cut(s) 223
CviJI RGCY 7 cut(s) 14, 45, 89, 179, 196, 249, 253
CviKI_1 RGCY 7 cut(s) 14, 45, 89, 179, 196, 249, 253
DdeI CTNAG 1 cut(s) 254
FaeI CATG 1 cut(s) 226
FaiI YATR 3 cut(s) 24, 156, 224
FatI CATG 1 cut(s) 222
HapII CCGG 1 cut(s) 90
Hin1II CATG 1 cut(s) 226
HpaII CCGG 1 cut(s) 90
HpyCH4III ACNGT 2 cut(s) 164, 185
HpyCH4V TGCA 2 cut(s) 154, 230
HpyF3I CTNAG 1 cut(s) 254
Hsp92II CATG 1 cut(s) 226
LmnI GCTCC 2 cut(s) 42, 86
LpnPI CCDG 4 cut(s) 103, 164, 186, 235
MboII GAAGA 1 cut(s) 62
MfeI CAATTG 1 cut(s) 123
MluCI AATT 1 cut(s) 123
MmeI TCCRAC 2 cut(s) 192, 217
MnlI CCTC 2 cut(s) 63, 226
MseI TTAA 2 cut(s) 32, 60
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 91
MunI CAATTG 1 cut(s) 123
NciI CCSGG 1 cut(s) 91
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 88
PstNI CAGNNNCTG 1 cut(s) 261
SaqAI TTAA 2 cut(s) 32, 60
ScrFI CCNGG 1 cut(s) 91
SetI ASST 3 cut(s) 47, 153, 237
Sse9I AATT 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 89
TaaI ACNGT 2 cut(s) 164, 185
TasI AATT 1 cut(s) 123
Tru1I TTAA 2 cut(s) 32, 60
Tru9I TTAA 2 cut(s) 32, 60
TscAI CASTG 2 cut(s) 180, 188
TspRI CASTG 2 cut(s) 180, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.