Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005154

Physical Location & Seq

Genomic Coordinates Forward (+)

17252714 .. 17259669

Gene Structure 6956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G114600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGAGCAGGGCTTGTAGTCTCTTCCAATTGTGCCAGAATCCAAACAGATTACTACTCAGAAGCTCTAAATTTTCCAAAGGTCCGTACTTGATACCTAGTGCCAGAATTTGTCCAGTCCTGTGCCTCTCTAAGGAAATACAAACTTCCGCATATGAAGTTGTCAGGGGAAGCTATGTACCCACAGCCTTGGTTAAACCAGAAAGCAAACCGAAGGACAAATCACCAGAAAATCTTGAAGGAGTTGGTGCATTCCAAAAGCTACCCATGGTGATGCCATCTGTTGACATTCTGTATTCTGCACTAAGAAAGGCTAAGAGGATTTCACCAACAAAGGGTATTGCCAATATTGCAAAGCGGGAAAGAAATAGAGGTGCAAAGCAACTTGATGCATTGATGAAAGAATTAGCAGTACCCTTGAGAACTTATTCAGAGAATTTTCCAAATAAAAAGTATCTTCACCCTTATGAGCGATCTCTTATTGAATTAACTCTTGGGGATGGAAATTATGAAGAGGTGTTGGGAAAGGTGGATTCTCTGAGGAAGAAGGTTGTGTCTGTTGGAAAGGAACACGCATCTCTTTGTGCTAAGTCATTGTCGAAGAAAGAAGCAGAGGAAAGGCTAACCGAGGGCATAAAGAAAGTTGAAGAGACATTTAATCGTGGAGGAAAACATGTCGATGATTTGTTACACATAGCCAAGACTCTGCGAGCAATGCCGGTAGTTGATCTAGAATCACCGACACTTTGTCTTGTTGGAGCACCGAATGTCGGGAAGTCGTCTTTGGTCCGCATACTCTCCACAGGGAAGCCTGAGGTTTGCAATTACCCTTTTACAACAAGAGGAATTCTGATGGGTCACATTATTTCAAACCATCAAACTTTTCAGGTGACAGACACTCCTGGGCTGCTCAAGAGATGTGATGAGGACAGAAATAATCTGGAAAAATTGACGCTTGCTGTGCTCTCGCATTTGCCAACGGCAATACTCTATGTCCATGACCTCTCTGGACAATGTGGAACCTCACCTTCTGATCAGTTTGTCATATACAAAGAAATAAAGGAGAGGTTTAGCGAGCATCTGTGGCTTGATGTTGTGTCCAAATGTGATCTGTTGCAAAAGTCTCCAGTGCTATTTGCTACTGATAAGGGTGATGATTCTGATCTTGAGCTGGAAAGGTACCGGAAATTGGGTCCCGATGGAGCTCTTCATGTGTCAGTGACAAATGAAGTAGGGCTCACTGAGTTGAAGAGTATAGTGCATGAGATGTTGAACTCTCAGATGACAAGGATCCAAGTTCAAGAAAAGCTGGAAGTTCTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

MMR_HSR1 NOG1

Protein Analysis

441

Amino Acids

49.08

Weight (kDa)

8.96

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80770 AT1G80770 AT1G80770 AT1G80770 AT1G80770 AT1G80770
fragaria_vesca	FvH4_7g08680 FvH4_7g08680
malus_domestica	MD02G1225900.v1.1 MD07G1087900.v1.1
prunus_persica	Prupe.2G114600_v2.0.a1
pyrus_communis	pycom02g19460 pycom07g07050
rosa_chinensis	RchiOBHm_Chr1g0343911
rosa_laevigata	RLG00000028949
rosa_multiflora	Rmu_sc0007032.1_g000002 Rmu_sc0007696.1_g000024
rosa_roxburghii	Rroxscaffold_4G00310300
rosa_rugosa	Rorug01G0169100 Rorug01G0169200 Rorug01G0169300
rosa_samantha	Rh1AG185700 Rh1BG125600 Rh1BG152500 Rh1CG171500 Rh1DG184500 Rh6BG211600 Rh6BG212200
rosa_wichuraiana	Rw1G015320 Rw1G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1176
AccB1I	GGYRCC	1 cut(s)	1176
AciI	CCGC	3 cut(s)	147, 355, 787
AclWI	GGATC	2 cut(s)	1282, 1295
AcsI	RAATTY	4 cut(s)	68, 105, 433, 843
AfaI	GTAC	4 cut(s)	86, 177, 411, 1178
AfiI	CCNNNNNNNGG	4 cut(s)	130, 332, 767, 1186
AflIII	ACRYGT	1 cut(s)	670
AgsI	TTSAA	7 cut(s)	236, 482, 644, 867, 1246, 1270, 1298
AhdI	GACNNNNNGTC	1 cut(s)	744
AjnI	CCWGG	1 cut(s)	898
AjuI	GAANNNNNNNTTGG	4 cut(s)	474, 506, 764, 796
AluBI	AGCT	6 cut(s)	63, 171, 259, 1168, 1202, 1306
AluI	AGCT	6 cut(s)	63, 171, 259, 1168, 1202, 1306
Alw21I	GWGCWC	3 cut(s)	760, 963, 1204
Alw26I	GTCTC	3 cut(s)	23, 641, 1125
AlwI	GGATC	2 cut(s)	1282, 1295
ApeKI	GCWGC	1 cut(s)	904
ApoI	RAATTY	4 cut(s)	68, 105, 433, 843
Asp700I	GAANNNNTTC	1 cut(s)	424
Asp718I	GGTACC	1 cut(s)	1176
AspS9I	GGNCC	3 cut(s)	80, 784, 1190
AsuHPI	GGTGA	8 cut(s)	213, 280, 315, 449, 726, 898, 1014, 1160
AvaII	GGWCC	3 cut(s)	80, 784, 1190
AxyI	CCTNAGG	1 cut(s)	810
BamHI	GGATCC	1 cut(s)	1287
BanI	GGYRCC	1 cut(s)	1176
BanII	GRGCYC	2 cut(s)	1204, 1236
Bbv12I	GWGCWC	3 cut(s)	760, 963, 1204
BbvI	GCAGC	1 cut(s)	891
BccI	CCATC	5 cut(s)	283, 491, 844, 879, 1190
BceAI	ACGGC	1 cut(s)	993
BciT130I	CCWGG	1 cut(s)	900
BclI	TGATCA	1 cut(s)	1030
BcoDI	GTCTC	3 cut(s)	23, 641, 1125
BfaI	CTAG	2 cut(s)	96, 728
BisI	GCNGC	1 cut(s)	905
BlsI	GCNGC	1 cut(s)	906
Bme1390I	CCNGG	1 cut(s)	900
Bme18I	GGWCC	3 cut(s)	80, 784, 1190
BmeRI	GACNNNNNGTC	1 cut(s)	744
BmgT120I	GGNCC	3 cut(s)	80, 784, 1190
BmiI	GGNNCC	5 cut(s)	1018, 1178, 1191, 1192, 1289
BmrFI	CCNGG	1 cut(s)	900
BmsI	GCATC	4 cut(s)	261, 376, 581, 1084
BpmI	CTGGAG	1 cut(s)	1107
BpuEI	CTTGAG	3 cut(s)	436, 893, 1184
BsaBI	GATNNNNATC	1 cut(s)	1158
BsaJI	CCNNGG	4 cut(s)	186, 264, 624, 899
BsaWI	WCCGGW	1 cut(s)	1179
BsaXI	ACNNNNNCTCC	2 cut(s)	880, 910
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 332, 767, 1186
Bse118I	RCCGGY	1 cut(s)	715
Bse1I	ACTGG	2 cut(s)	113, 1124
Bse21I	CCTNAGG	1 cut(s)	810
Bse3DI	GCAATG	1 cut(s)	717
Bse8I	GATNNNNATC	1 cut(s)	1158
BseBI	CCWGG	1 cut(s)	900
BseDI	CCNNGG	4 cut(s)	186, 264, 624, 899
BseGI	GGATG	1 cut(s)	502
BseJI	GATNNNNATC	1 cut(s)	1158
BseLI	CCNNNNNNNGG	4 cut(s)	130, 332, 767, 1186
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	5 cut(s)	70, 527, 801, 1230, 1289
BseNI	ACTGG	2 cut(s)	113, 1124
BseXI	GCAGC	1 cut(s)	891
BsgI	GTGCAG	1 cut(s)	282
BshNI	GGYRCC	1 cut(s)	1176
BsiHKAI	GWGCWC	3 cut(s)	760, 963, 1204
BsiSI	CCGG	2 cut(s)	716, 1180
BslFI	GGGAC	1 cut(s)	1176
BslI	CCNNNNNNNGG	4 cut(s)	130, 332, 767, 1186
BsmAI	GTCTC	3 cut(s)	23, 641, 1125
BsmFI	GGGAC	1 cut(s)	1176
BsmI	GAATGC	1 cut(s)	248
Bsp1286I	GDGCHC	4 cut(s)	760, 963, 1204, 1236
Bsp143I	GATC	6 cut(s)	470, 724, 1030, 1105, 1159, 1287
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	3 cut(s)	147, 355, 787
BspCNI	CTCAG	5 cut(s)	69, 528, 802, 1231, 1288
BspLI	GGNNCC	5 cut(s)	1018, 1178, 1191, 1192, 1289
BspPI	GGATC	2 cut(s)	1282, 1295
BspQI	GCTCTTC	1 cut(s)	1209
BspT107I	GGYRCC	1 cut(s)	1176
BsrDI	GCAATG	1 cut(s)	717
BsrFI	RCCGGY	1 cut(s)	715
BsrI	ACTGG	2 cut(s)	113, 1124
BssAI	RCCGGY	1 cut(s)	715
BssECI	CCNNGG	4 cut(s)	186, 264, 624, 899
BssMI	GATC	6 cut(s)	470, 724, 1030, 1105, 1159, 1287
BssT1I	CCWWGG	2 cut(s)	186, 264
Bst2UI	CCWGG	1 cut(s)	900
Bst6I	CTCTTC	5 cut(s)	26, 504, 639, 1209, 1241
BstC8I	GCNNGC	3 cut(s)	708, 954, 1073
BstDEI	CTNAG	9 cut(s)	56, 129, 302, 312, 536, 585, 810, 1239, 1275
BstDSI	CCRYGG	1 cut(s)	264
BstENI	CCTNNNNNAGG	1 cut(s)	128
BstF5I	GGATG	1 cut(s)	502
BstKTI	GATC	6 cut(s)	473, 727, 1033, 1108, 1162, 1290
BstMAI	GTCTC	3 cut(s)	23, 641, 1125
BstMBI	GATC	6 cut(s)	470, 724, 1030, 1105, 1159, 1287
BstMWI	GCNNNNNNNGC	4 cut(s)	347, 712, 958, 1081
BstNI	CCWGG	1 cut(s)	900
BstNSI	RCATGY	1 cut(s)	674
BstSCI	CCNGG	1 cut(s)	898
BstV1I	GCAGC	1 cut(s)	891
BstX2I	RGATCY	1 cut(s)	1287
BstXI	CCANNNNNNTGG	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	1287
Bsu36I	CCTNAGG	1 cut(s)	810
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	502
BtsIMutI	CAGTG	3 cut(s)	1131, 1221, 1236
Cac8I	GCNNGC	3 cut(s)	708, 954, 1073
Cfr10I	RCCGGY	1 cut(s)	715
Cfr13I	GGNCC	3 cut(s)	80, 784, 1190
CseI	GACGC	1 cut(s)	958
Csp6I	GTAC	4 cut(s)	85, 176, 410, 1177
CviAII	CATG	5 cut(s)	265, 671, 995, 1208, 1259
CviQI	GTAC	4 cut(s)	85, 176, 410, 1177
DdeI	CTNAG	9 cut(s)	56, 129, 302, 312, 536, 585, 810, 1239, 1275
DpnI	GATC	6 cut(s)	472, 726, 1032, 1107, 1161, 1289
DpnII	GATC	6 cut(s)	470, 724, 1030, 1105, 1159, 1287
DriI	GACNNNNNGTC	1 cut(s)	744
Eam1104I	CTCTTC	5 cut(s)	26, 504, 639, 1209, 1241
Eam1105I	GACNNNNNGTC	1 cut(s)	744
EarI	CTCTTC	5 cut(s)	26, 504, 639, 1209, 1241
Ecl136II	GAGCTC	1 cut(s)	1202
Eco130I	CCWWGG	2 cut(s)	186, 264
Eco24I	GRGCYC	2 cut(s)	1204, 1236
Eco47I	GGWCC	3 cut(s)	80, 784, 1190
Eco53kI	GAGCTC	1 cut(s)	1202
Eco81I	CCTNAGG	1 cut(s)	810
EcoICRI	GAGCTC	1 cut(s)	1202
EcoNI	CCTNNNNNAGG	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	1190
EcoRI	GAATTC	1 cut(s)	843
EcoRII	CCWGG	1 cut(s)	898
EcoT14I	CCWWGG	2 cut(s)	186, 264
EcoT22I	ATGCAT	1 cut(s)	391
EcoT38I	GRGCYC	2 cut(s)	1204, 1236
ErhI	CCWWGG	2 cut(s)	186, 264
FaeI	CATG	5 cut(s)	268, 674, 998, 1211, 1262
FaqI	GGGAC	1 cut(s)	1176
FatI	CATG	5 cut(s)	264, 670, 994, 1207, 1258
FauI	CCCGC	1 cut(s)	348
FauNDI	CATATG	1 cut(s)	151
FbaI	TGATCA	1 cut(s)	1030
Fnu4HI	GCNGC	1 cut(s)	905
FokI	GGATG	1 cut(s)	509
FriOI	GRGCYC	2 cut(s)	1204, 1236
Fsp4HI	GCNGC	1 cut(s)	905
FspBI	CTAG	2 cut(s)	96, 728
GluI	GCNGC	1 cut(s)	905
GsuI	CTGGAG	1 cut(s)	1107
HapII	CCGG	2 cut(s)	716, 1180
HgaI	GACGC	1 cut(s)	958
Hin1II	CATG	5 cut(s)	268, 674, 998, 1211, 1262
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	5 cut(s)	37, 530, 700, 731, 1154
HpaII	CCGG	2 cut(s)	716, 1180
HphI	GGTGA	8 cut(s)	213, 280, 315, 449, 726, 898, 1014, 1160
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	7 cut(s)	59, 430, 537, 849, 1030, 1159, 1278
Hpy188III	TCNNGA	9 cut(s)	233, 728, 769, 910, 938, 1005, 1163, 1193, 1298
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	4 cut(s)	205, 230, 538, 1035
HpyCH4V	TGCA	8 cut(s)	248, 299, 350, 374, 389, 819, 1114, 1258
HpyF10VI	GCNNNNNNNGC	4 cut(s)	347, 712, 958, 1081
HpyF3I	CTNAG	9 cut(s)	56, 129, 302, 312, 536, 585, 810, 1239, 1275
Hsp92II	CATG	5 cut(s)	268, 674, 998, 1211, 1262
KflI	GGGWCCC	1 cut(s)	1190
KpnI	GGTACC	1 cut(s)	1180
Ksp22I	TGATCA	1 cut(s)	1030
Kzo9I	GATC	6 cut(s)	470, 724, 1030, 1105, 1159, 1287
LguI	GCTCTTC	1 cut(s)	1209
LmnI	GCTCC	2 cut(s)	755, 1199
Lsp1109I	GCAGC	1 cut(s)	891
LweI	GCATC	4 cut(s)	261, 376, 581, 1084
MaeI	CTAG	2 cut(s)	96, 728
MaeIII	GTNAC	4 cut(s)	684, 854, 886, 1216
MalI	GATC	6 cut(s)	472, 726, 1032, 1107, 1161, 1289
MboI	GATC	6 cut(s)	470, 724, 1030, 1105, 1159, 1287
MboII	GAAGA	8 cut(s)	13, 446, 521, 553, 610, 656, 1196, 1258
MfeI	CAATTG	1 cut(s)	26
MflI	RGATCY	1 cut(s)	1287
MhlI	GDGCHC	4 cut(s)	760, 963, 1204, 1236
MlyI	GAGTC	1 cut(s)	694
MmeI	TCCRAC	2 cut(s)	538, 733
Mph1103I	ATGCAT	1 cut(s)	391
MroXI	GAANNNNTTC	1 cut(s)	424
MseI	TTAA	3 cut(s)	192, 485, 654
MslI	CAYNNNNRTG	3 cut(s)	269, 462, 675
MspI	CCGG	2 cut(s)	716, 1180
MspR9I	CCNGG	1 cut(s)	900
MunI	CAATTG	1 cut(s)	26
Mva1269I	GAATGC	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	900
MwoI	GCNNNNNNNGC	4 cut(s)	347, 712, 958, 1081
NcoI	CCATGG	1 cut(s)	264
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	6 cut(s)	470, 724, 1030, 1105, 1159, 1287
NlaIII	CATG	5 cut(s)	268, 674, 998, 1211, 1262
NlaIV	GGNNCC	5 cut(s)	1018, 1178, 1191, 1192, 1289
NmuCI	GTSAC	3 cut(s)	854, 886, 1216
NsiI	ATGCAT	1 cut(s)	391
NspI	RCATGY	1 cut(s)	674
PciI	ACATGT	1 cut(s)	670
PciSI	GCTCTTC	1 cut(s)	1209
PctI	GAATGC	1 cut(s)	248
PdmI	GAANNNNTTC	1 cut(s)	424
PfeI	GAWTC	4 cut(s)	37, 530, 731, 1154
PkrI	GCNGC	1 cut(s)	906
PleI	GAGTC	1 cut(s)	694
PpsI	GAGTC	1 cut(s)	694
PpuMI	RGGWCCY	1 cut(s)	1190
PscI	ACATGT	1 cut(s)	670
Psp124BI	GAGCTC	1 cut(s)	1204
Psp5II	RGGWCCY	1 cut(s)	1190
Psp6I	CCWGG	1 cut(s)	898
PspGI	CCWGG	1 cut(s)	898
PspN4I	GGNNCC	5 cut(s)	1018, 1178, 1191, 1192, 1289
PspPI	GGNCC	3 cut(s)	80, 784, 1190
PspPPI	RGGWCCY	1 cut(s)	1190
PsuI	RGATCY	1 cut(s)	1287
RsaI	GTAC	4 cut(s)	86, 177, 411, 1178
RsaNI	GTAC	4 cut(s)	85, 176, 410, 1177
RseI	CAYNNNNRTG	3 cut(s)	269, 462, 675
SacI	GAGCTC	1 cut(s)	1204
SapI	GCTCTTC	1 cut(s)	1209
SaqAI	TTAA	3 cut(s)	192, 485, 654
SatI	GCNGC	1 cut(s)	905
Sau3AI	GATC	6 cut(s)	470, 724, 1030, 1105, 1159, 1287
Sau96I	GGNCC	3 cut(s)	80, 784, 1190
SchI	GAGTC	1 cut(s)	694
ScrFI	CCNGG	1 cut(s)	900
SduI	GDGCHC	4 cut(s)	760, 963, 1204, 1236
SfaNI	GCATC	4 cut(s)	261, 376, 581, 1084
SinI	GGWCC	3 cut(s)	80, 784, 1190
SmiMI	CAYNNNNRTG	3 cut(s)	269, 462, 675
SmlI	CTYRAG	3 cut(s)	415, 908, 1163
SmoI	CTYRAG	3 cut(s)	415, 908, 1163
SsiI	CCGC	3 cut(s)	147, 355, 787
SspI	AATATT	1 cut(s)	346
SspMI	CTAG	2 cut(s)	96, 728
SstI	GAGCTC	1 cut(s)	1204
StyD4I	CCNGG	1 cut(s)	898
StyI	CCWWGG	2 cut(s)	186, 264
TaqI	TCGA	2 cut(s)	596, 675
TfiI	GAWTC	4 cut(s)	37, 530, 731, 1154
Tru1I	TTAA	3 cut(s)	192, 485, 654
Tru9I	TTAA	3 cut(s)	192, 485, 654
TscAI	CASTG	3 cut(s)	1131, 1221, 1243
TseFI	GTSAC	3 cut(s)	854, 886, 1216
TseI	GCWGC	1 cut(s)	904
Tsp45I	GTSAC	3 cut(s)	854, 886, 1216
TspDTI	ATGAA	5 cut(s)	168, 410, 522, 1196, 1239
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	3 cut(s)	1131, 1221, 1243
VpaK11BI	GGWCC	3 cut(s)	80, 784, 1190
XagI	CCTNNNNNAGG	1 cut(s)	128
XapI	RAATTY	4 cut(s)	68, 105, 433, 843
XbaI	TCTAGA	1 cut(s)	727
XceI	RCATGY	1 cut(s)	674
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1001
XmnI	GAANNNNTTC	1 cut(s)	424
XspI	CTAG	2 cut(s)	96, 728
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.