Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005154

Physical Location & Seq

Genomic Coordinates Forward (+)

23091134 .. 23091588

Gene Structure 455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0169300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCAGACCACCGTGTTTGGAGATCTTTGGCCTTCATGGTTCAACGTCGGTGTTCACAGGACCACCGCCTGGTGCAGCCACTGATGCCGGTCGCGGATCGTCGGCGGCGTGGCTCGTCATTGGCGGTCGTCCGTCTCAGAGGGCACGCGAGGGAGACAACTGCCAAGTCCGGGTTGTGGACCAGTCCTGCAGGTTTGGGCCTCTCTTGTGGCTATGGACCTGTCAGGCTGGTTTGGGCCACTCATACTCTTGGTAAGGACACGTGGGCTTTGTCCATGTCTGCATTCTCAGTATGCCTTGTCTGCCCTAGCGAGGTGGCAGATCATGCATTGGTTGCAACCTCCTGGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

MMR_HSR1 NOG1

Protein Analysis

117

Amino Acids

13.0

Weight (kDa)

10.68

Isoelectric Point (pI)

56.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80770 AT1G80770 AT1G80770 AT1G80770 AT1G80770 AT1G80770
fragaria_vesca	FvH4_7g08680 FvH4_7g08680
malus_domestica	MD02G1225900.v1.1 MD07G1087900.v1.1
prunus_persica	Prupe.2G114600_v2.0.a1
pyrus_communis	pycom02g19460 pycom07g07050
rosa_chinensis	RchiOBHm_Chr1g0343911
rosa_laevigata	RLG00000028949
rosa_multiflora	Rmu_sc0007032.1_g000002 Rmu_sc0007696.1_g000024
rosa_roxburghii	Rroxscaffold_4G00310300
rosa_rugosa	Rorug01G0169100 Rorug01G0169200 Rorug01G0169300
rosa_samantha	Rh1AG185700 Rh1BG125600 Rh1BG152500 Rh1CG171500 Rh1DG184500 Rh6BG211600 Rh6BG212200
rosa_wichuraiana	Rw1G015320 Rw1G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	182
AccB7I	CCANNNNNTGG	1 cut(s)	70
AccII	CGCG	2 cut(s)	95, 149
AciI	CCGC	4 cut(s)	67, 95, 106, 125
AclWI	GGATC	1 cut(s)	105
AcvI	CACGTG	1 cut(s)	264
AfiI	CCNNNNNNNGG	5 cut(s)	70, 171, 177, 313, 348
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	1 cut(s)	44
AjnI	CCWGG	2 cut(s)	69, 344
Alw26I	GTCTC	2 cut(s)	140, 149
AlwI	GGATC	1 cut(s)	105
AlwNI	CAGNNNCTG	1 cut(s)	82
AoxI	GGCC	3 cut(s)	30, 199, 237
ApeKI	GCWGC	1 cut(s)	76
AspS9I	GGNCC	5 cut(s)	61, 180, 199, 218, 237
AsuC2I	CCSGG	1 cut(s)	172
AvaII	GGWCC	3 cut(s)	61, 180, 218
BaeGI	GKGCMC	1 cut(s)	147
BbrPI	CACGTG	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	88
BciT130I	CCWGG	2 cut(s)	71, 346
BcnI	CCSGG	1 cut(s)	172
BcoDI	GTCTC	2 cut(s)	140, 149
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	189
BfuAI	ACCTGC	1 cut(s)	182
BglII	AGATCT	1 cut(s)	23
BisI	GCNGC	2 cut(s)	77, 107
BlsI	GCNGC	2 cut(s)	78, 108
Bme1390I	CCNGG	3 cut(s)	71, 172, 346
Bme18I	GGWCC	3 cut(s)	61, 180, 218
BmgT120I	GGNCC	5 cut(s)	61, 180, 199, 218, 237
BmrFI	CCNGG	3 cut(s)	71, 172, 346
BmsI	GCATC	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	172
BsaAI	YACGTR	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	5 cut(s)	70, 171, 177, 313, 348
Bse118I	RCCGGY	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	183
BseBI	CCWGG	2 cut(s)	71, 346
BseLI	CCNNNNNNNGG	5 cut(s)	70, 171, 177, 313, 348
BseMII	CTCAG	2 cut(s)	151, 303
BseNI	ACTGG	1 cut(s)	183
BseSI	GKGCMC	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	88
BsgI	GTGCAG	1 cut(s)	95
Bsh1236I	CGCG	2 cut(s)	95, 149
Bsh1285I	CGRYCG	2 cut(s)	93, 129
BshFI	GGCC	3 cut(s)	32, 201, 239
BsiEI	CGRYCG	2 cut(s)	93, 129
BsiSI	CCGG	2 cut(s)	89, 171
BslI	CCNNNNNNNGG	5 cut(s)	70, 171, 177, 313, 348
BsmAI	GTCTC	2 cut(s)	140, 149
BsmBI	CGTCTC	1 cut(s)	140
BsmI	GAATGC	1 cut(s)	284
BsnI	GGCC	3 cut(s)	32, 201, 239
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	3 cut(s)	23, 97, 322
BspACI	CCGC	4 cut(s)	67, 95, 106, 125
BspANI	GGCC	3 cut(s)	32, 201, 239
BspCNI	CTCAG	2 cut(s)	150, 302
BspFNI	CGCG	2 cut(s)	95, 149
BspMAI	CTGCAG	1 cut(s)	193
BspMI	ACCTGC	1 cut(s)	182
BspPI	GGATC	1 cut(s)	105
BsrFI	RCCGGY	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	183
BssAI	RCCGGY	1 cut(s)	88
BssMI	GATC	3 cut(s)	23, 97, 322
Bst2UI	CCWGG	2 cut(s)	71, 346
Bst4CI	ACNGT	1 cut(s)	14
BstAPI	GCANNNNNTGC	2 cut(s)	326, 335
BstBAI	YACGTR	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	137, 289
BstFNI	CGCG	2 cut(s)	95, 149
BstKTI	GATC	3 cut(s)	26, 100, 325
BstMAI	GTCTC	2 cut(s)	140, 149
BstMBI	GATC	3 cut(s)	23, 97, 322
BstMCI	CGRYCG	2 cut(s)	93, 129
BstMWI	GCNNNNNNNGC	4 cut(s)	85, 303, 326, 335
BstNI	CCWGG	2 cut(s)	71, 346
BstSCI	CCNGG	3 cut(s)	69, 170, 344
BstSFI	CTRYAG	1 cut(s)	189
BstSLI	GKGCMC	1 cut(s)	147
BstUI	CGCG	2 cut(s)	95, 149
BstV1I	GCAGC	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BsuRI	GGCC	3 cut(s)	32, 201, 239
BtsIMutI	CAGTG	1 cut(s)	80
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	1 cut(s)	147
CaiI	CAGNNNCTG	1 cut(s)	82
Cfr10I	RCCGGY	1 cut(s)	88
Cfr13I	GGNCC	5 cut(s)	61, 180, 199, 218, 237
CspCI	CAANNNNNGTGG	1 cut(s)	34
CviAII	CATG	3 cut(s)	37, 277, 326
CviJI	RGCY	8 cut(s)	32, 79, 114, 201, 213, 229, 239, 269
CviKI_1	RGCY	8 cut(s)	32, 79, 114, 201, 213, 229, 239, 269
DdeI	CTNAG	2 cut(s)	137, 289
DpnI	GATC	3 cut(s)	25, 99, 324
DpnII	GATC	3 cut(s)	23, 97, 322
Eco47I	GGWCC	3 cut(s)	61, 180, 218
Eco72I	CACGTG	1 cut(s)	264
EcoRII	CCWGG	2 cut(s)	69, 344
EcoT22I	ATGCAT	1 cut(s)	331
Esp3I	CGTCTC	1 cut(s)	140
FaeI	CATG	3 cut(s)	40, 280, 329
FaiI	YATR	6 cut(s)	38, 216, 246, 278, 295, 327
FatI	CATG	3 cut(s)	36, 276, 325
Fnu4HI	GCNGC	2 cut(s)	77, 107
Fsp4HI	GCNGC	2 cut(s)	77, 107
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	2 cut(s)	77, 107
HaeIII	GGCC	3 cut(s)	32, 201, 239
HapII	CCGG	2 cut(s)	89, 171
Hin1II	CATG	3 cut(s)	40, 280, 329
HpaII	CCGG	2 cut(s)	89, 171
Hpy166II	GTNNAC	2 cut(s)	56, 180
Hpy188I	TCNGA	1 cut(s)	140
Hpy8I	GTNNAC	2 cut(s)	56, 180
Hpy99I	CGWCG	2 cut(s)	51, 105
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4IV	ACGT	2 cut(s)	46, 263
HpyCH4V	TGCA	5 cut(s)	76, 191, 284, 329, 338
HpyF10VI	GCNNNNNNNGC	4 cut(s)	85, 303, 326, 335
HpyF3I	CTNAG	2 cut(s)	137, 289
HpySE526I	ACGT	2 cut(s)	46, 263
Hsp92II	CATG	3 cut(s)	40, 280, 329
Kzo9I	GATC	3 cut(s)	23, 97, 322
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	2 cut(s)	46, 263
MalI	GATC	3 cut(s)	25, 99, 324
MboI	GATC	3 cut(s)	23, 97, 322
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	147
MnlI	CCTC	5 cut(s)	134, 144, 212, 307, 352
Mph1103I	ATGCAT	1 cut(s)	331
MspI	CCGG	2 cut(s)	89, 171
MspR9I	CCNGG	3 cut(s)	71, 172, 346
Mva1269I	GAATGC	1 cut(s)	284
MvaI	CCWGG	2 cut(s)	71, 346
MvnI	CGCG	2 cut(s)	95, 149
MwoI	GCNNNNNNNGC	4 cut(s)	85, 303, 326, 335
NciI	CCSGG	1 cut(s)	172
NdeII	GATC	3 cut(s)	23, 97, 322
NlaIII	CATG	3 cut(s)	40, 280, 329
NsiI	ATGCAT	1 cut(s)	331
PcsI	WCGNNNNNNNCGW	1 cut(s)	106
PctI	GAATGC	1 cut(s)	284
PflMI	CCANNNNNTGG	1 cut(s)	70
PkrI	GCNGC	2 cut(s)	78, 108
PmaCI	CACGTG	1 cut(s)	264
PmlI	CACGTG	1 cut(s)	264
Ppu21I	YACGTR	1 cut(s)	264
Psp6I	CCWGG	2 cut(s)	69, 344
PspCI	CACGTG	1 cut(s)	264
PspGI	CCWGG	2 cut(s)	69, 344
PspPI	GGNCC	5 cut(s)	61, 180, 199, 218, 237
PstI	CTGCAG	1 cut(s)	193
PstNI	CAGNNNCTG	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	23
SatI	GCNGC	2 cut(s)	77, 107
Sau3AI	GATC	3 cut(s)	23, 97, 322
Sau96I	GGNCC	5 cut(s)	61, 180, 199, 218, 237
SbfI	CCTGCAGG	1 cut(s)	193
ScrFI	CCNGG	3 cut(s)	71, 172, 346
SdaI	CCTGCAGG	1 cut(s)	193
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	6 cut(s)	49, 196, 223, 266, 318, 344
SfaNI	GCATC	1 cut(s)	75
SfcI	CTRYAG	1 cut(s)	189
SinI	GGWCC	3 cut(s)	61, 180, 218
Sse8387I	CCTGCAGG	1 cut(s)	193
SsiI	CCGC	4 cut(s)	67, 95, 106, 125
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	3 cut(s)	69, 170, 344
TaaI	ACNGT	1 cut(s)	14
TaiI	ACGT	2 cut(s)	49, 266
TauI	GCSGC	1 cut(s)	109
TscAI	CASTG	1 cut(s)	87
TseI	GCWGC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	25
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	87
Van91I	CCANNNNNTGG	1 cut(s)	70
VpaK11BI	GGWCC	3 cut(s)	61, 180, 218
XspI	CTAG	1 cut(s)	309
Zsp2I	ATGCAT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.