Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005154

Physical Location & Seq

Genomic Coordinates Forward (+)

6379548 .. 6385885

Gene Structure 6338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g07050.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGAGCAGGGCTTCTACTCTCTTCCAATTGTGGCAGACCCCAATCAGATTGCCGCTCACAATCTCTAAAATTTCAAAAGGTCCGCACTTGATACCGAGTGCCAGAAGTTATCCAGTACTGTGCTTCTGCAAGGAAATACAAACTAGCACATATGAAGTTGTCAAGGGAAGCTATGTACCTTCGCCTGTTGTAAAACCAGAGAGCAAGGCGAAGGAAAAATCACTCGAAAATCTTGAAGATGTTGGTGCATTCCAAAAGCTACCCATGGTGATGCCATCTGTTGACATTCTGTACTCAGCACTAAGGAAGGCTAAGAGGATTACACCAACAAAGGGTATTGCCAATATTGCAAAGCGAGAGAGAAATAGAGGTGCAAGGCAACTTGATGCATTGATGAAAGAATTGGCAATTCCGTTGAGAACTTATTCAGAGAATTTTCCAAATAAAAAGTATCTTCACCCTTACGAACGGTCTCTTATTGAATTAACTCTTGGGGATGGAAATTATGAACAGGTGTTGGGAAAGGTTGATGCTTTGAGGAAGAAGGTTGTGTCTATTGGAAAGGAACATGCATCTCTTTGTGCTAAGTCAACGACGAAGAAGGAAGCAGAGGCAAGACTAACTGAGGGTATAAAGAAAGTCGAAGAGACATTTAATCGTGAAGGAAAACATGTCGATGATTTGTTACACATAGCCAAGACCCTGCGAGCAATGCCAGTACTTGATCTAGAAGCACCGACACTGTGTCTTGTTGGAGCTCCTAATGTCGGGAAGTCATCTTTGGTCCGTATACTCTCTACTGGGAAGCCTGAGATCTGCAACTACCCATTCACAACAAGAGGAATACTAATGGGTCATATTATTTCAAGCCATCAGACTTTTCAGGTGACAGACACTCCTGGCCTGCTGAAGAGATGTGATGAGGACAGAAATAATTTGGAAAAATTGACACTTGCTGTCCTCTCACATTTACCGACCGCAATTCTCTATGTCCATGACCTCACTGGGGAATGCGGGACCTCACCTTCTGACCAGTTTGTCATATACAAGGAAATAAAGGAGAGGTTTGGTGAGCATCTTTGGCTTGATGTTGTGTCCAAATGTGATCTGTTGCAAAAGTCTCCAGTGCTATTTGCCACTGATAATGGTGATGATTCTGATCTTAAGCTGGAAAGGTACCGGAAGTTGGGTCCCGACGGAGCTATTCATGTGTCAGTAATGAATGAAGTAGGGCTCGCCGAGTTGAAGAGTAGAGTGCATGAGATGCTGGATTCTCAGATGACAAGGATCCAAGTTCAAGAAAGCAACAAAGAAAAGCTTGAACTTGTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

MMR_HSR1 NOG1

Protein Analysis

445

Amino Acids

49.7

Weight (kDa)

8.95

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80770 AT1G80770 AT1G80770 AT1G80770 AT1G80770 AT1G80770
fragaria_vesca	FvH4_7g08680 FvH4_7g08680
malus_domestica	MD02G1225900.v1.1 MD07G1087900.v1.1
prunus_persica	Prupe.2G114600_v2.0.a1
pyrus_communis	pycom02g19460 pycom07g07050
rosa_chinensis	RchiOBHm_Chr1g0343911
rosa_laevigata	RLG00000028949
rosa_multiflora	Rmu_sc0007032.1_g000002 Rmu_sc0007696.1_g000024
rosa_roxburghii	Rroxscaffold_4G00310300
rosa_rugosa	Rorug01G0169100 Rorug01G0169200 Rorug01G0169300
rosa_samantha	Rh1AG185700 Rh1BG125600 Rh1BG152500 Rh1CG171500 Rh1DG184500 Rh6BG211600 Rh6BG212200
rosa_wichuraiana	Rw1G015320 Rw1G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1037
Acc65I	GGTACC	1 cut(s)	1176
AccB1I	GGYRCC	1 cut(s)	1176
AccBSI	CCGCTC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	790
AciI	CCGC	4 cut(s)	53, 83, 978, 1014
AclWI	GGATC	2 cut(s)	1282, 1295
AcsI	RAATTY	2 cut(s)	69, 433
AcuI	CTGAAG	1 cut(s)	929
AfaI	GTAC	5 cut(s)	117, 177, 293, 720, 1178
AfiI	CCNNNNNNNGG	4 cut(s)	332, 767, 1006, 1186
AflII	CTTAAG	1 cut(s)	1163
AflIII	ACRYGT	1 cut(s)	670
AgsI	TTSAA	7 cut(s)	75, 236, 482, 867, 1246, 1298, 1322
AhdI	GACNNNNNGTC	1 cut(s)	744
AjnI	CCWGG	1 cut(s)	898
AjuI	GAANNNNNNNTTGG	4 cut(s)	474, 506, 764, 796
AluBI	AGCT	6 cut(s)	171, 259, 758, 1168, 1202, 1318
AluI	AGCT	6 cut(s)	171, 259, 758, 1168, 1202, 1318
Alw21I	GWGCWC	1 cut(s)	760
Alw26I	GTCTC	3 cut(s)	477, 641, 1125
AlwI	GGATC	2 cut(s)	1282, 1295
AoxI	GGCC	1 cut(s)	901
ApoI	RAATTY	2 cut(s)	69, 433
Asp700I	GAANNNNTTC	1 cut(s)	424
Asp718I	GGTACC	1 cut(s)	1176
AspS9I	GGNCC	4 cut(s)	80, 784, 1017, 1190
AsuHPI	GGTGA	6 cut(s)	280, 449, 898, 1014, 1082, 1160
AvaII	GGWCC	4 cut(s)	80, 784, 1017, 1190
BamHI	GGATCC	1 cut(s)	1287
BanI	GGYRCC	1 cut(s)	1176
BanII	GRGCYC	2 cut(s)	760, 1236
Bbv12I	GWGCWC	1 cut(s)	760
BccI	CCATC	3 cut(s)	283, 491, 879
BciT130I	CCWGG	1 cut(s)	900
BcoDI	GTCTC	3 cut(s)	477, 641, 1125
BfaI	CTAG	2 cut(s)	144, 728
BfrI	CTTAAG	1 cut(s)	1163
BglII	AGATCT	1 cut(s)	813
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
BmcAI	AGTACT	2 cut(s)	117, 720
Bme1390I	CCNGG	1 cut(s)	900
Bme18I	GGWCC	4 cut(s)	80, 784, 1017, 1190
BmeRI	GACNNNNNGTC	1 cut(s)	744
BmgT120I	GGNCC	4 cut(s)	80, 784, 1017, 1190
BmiI	GGNNCC	5 cut(s)	1018, 1178, 1191, 1192, 1289
BmrFI	CCNGG	1 cut(s)	900
BmrI	ACTGGG	2 cut(s)	810, 1014
BmsI	GCATC	6 cut(s)	261, 376, 520, 581, 1084, 1254
BmuI	ACTGGG	2 cut(s)	810, 1014
BpmI	CTGGAG	1 cut(s)	1107
BsaBI	GATNNNNATC	1 cut(s)	1158
BsaI	GGTCTC	1 cut(s)	477
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	1179
BsaXI	ACNNNNNCTCC	2 cut(s)	880, 910
Bsc4I	CCNNNNNNNGG	4 cut(s)	332, 767, 1006, 1186
Bse1I	ACTGG	6 cut(s)	113, 716, 805, 1009, 1033, 1124
Bse3DI	GCAATG	1 cut(s)	717
Bse8I	GATNNNNATC	1 cut(s)	1158
BseBI	CCWGG	1 cut(s)	900
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	502
BseJI	GATNNNNATC	1 cut(s)	1158
BseLI	CCNNNNNNNGG	4 cut(s)	332, 767, 1006, 1186
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	4 cut(s)	309, 615, 801, 1289
BseNI	ACTGG	6 cut(s)	113, 716, 805, 1009, 1033, 1124
Bsh1285I	CGRYCG	1 cut(s)	978
BshFI	GGCC	1 cut(s)	903
BshNI	GGYRCC	1 cut(s)	1176
BsiEI	CGRYCG	1 cut(s)	978
BsiHKAI	GWGCWC	1 cut(s)	760
BsiSI	CCGG	1 cut(s)	1180
BslFI	GGGAC	2 cut(s)	1030, 1176
BslI	CCNNNNNNNGG	4 cut(s)	332, 767, 1006, 1186
BsmAI	GTCTC	3 cut(s)	477, 641, 1125
BsmFI	GGGAC	2 cut(s)	1030, 1176
BsmI	GAATGC	2 cut(s)	248, 1016
BsnI	GGCC	1 cut(s)	903
Bso31I	GGTCTC	1 cut(s)	477
Bsp1286I	GDGCHC	2 cut(s)	760, 1236
Bsp143I	GATC	5 cut(s)	724, 813, 1105, 1159, 1287
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	4 cut(s)	53, 83, 978, 1014
BspANI	GGCC	1 cut(s)	903
BspCNI	CTCAG	4 cut(s)	308, 616, 802, 1288
BspLI	GGNNCC	5 cut(s)	1018, 1178, 1191, 1192, 1289
BspPI	GGATC	2 cut(s)	1282, 1295
BspT107I	GGYRCC	1 cut(s)	1176
BspTI	CTTAAG	1 cut(s)	1163
BspTNI	GGTCTC	1 cut(s)	477
BsrBI	CCGCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	717
BsrI	ACTGG	6 cut(s)	113, 716, 805, 1009, 1033, 1124
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	5 cut(s)	724, 813, 1105, 1159, 1287
BssNAI	GTATAC	1 cut(s)	791
BssT1I	CCWWGG	1 cut(s)	264
Bst1107I	GTATAC	1 cut(s)	791
Bst2UI	CCWGG	1 cut(s)	900
Bst4CI	ACNGT	3 cut(s)	120, 471, 744
Bst6I	CTCTTC	4 cut(s)	26, 639, 905, 1241
BstAFI	CTTAAG	1 cut(s)	1163
BstAPI	GCANNNNNTGC	1 cut(s)	1264
BstC8I	GCNNGC	3 cut(s)	708, 905, 1236
BstDEI	CTNAG	7 cut(s)	295, 302, 312, 585, 624, 810, 1275
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	502
BstKTI	GATC	5 cut(s)	727, 816, 1108, 1162, 1290
BstMAI	GTCTC	3 cut(s)	477, 641, 1125
BstMBI	GATC	5 cut(s)	724, 813, 1105, 1159, 1287
BstMCI	CGRYCG	1 cut(s)	978
BstMWI	GCNNNNNNNGC	4 cut(s)	347, 712, 1081, 1264
BstNI	CCWGG	1 cut(s)	900
BstNSI	RCATGY	2 cut(s)	572, 674
BstSCI	CCNGG	1 cut(s)	898
BstX2I	RGATCY	2 cut(s)	813, 1287
BstYI	RGATCY	2 cut(s)	813, 1287
BstZ17I	GTATAC	1 cut(s)	791
BsuRI	GGCC	1 cut(s)	903
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	502
BtsIMutI	CAGTG	4 cut(s)	740, 1002, 1131, 1137
Cac8I	GCNNGC	3 cut(s)	708, 905, 1236
Cfr13I	GGNCC	4 cut(s)	80, 784, 1017, 1190
Csp6I	GTAC	5 cut(s)	116, 176, 292, 719, 1177
CviAII	CATG	6 cut(s)	265, 569, 671, 995, 1208, 1259
CviQI	GTAC	5 cut(s)	116, 176, 292, 719, 1177
DdeI	CTNAG	7 cut(s)	295, 302, 312, 585, 624, 810, 1275
DpnI	GATC	5 cut(s)	726, 815, 1107, 1161, 1289
DpnII	GATC	5 cut(s)	724, 813, 1105, 1159, 1287
DrdI	GACNNNNNNGTC	1 cut(s)	1037
DriI	GACNNNNNGTC	1 cut(s)	744
DseDI	GACNNNNNNGTC	1 cut(s)	1037
Eam1104I	CTCTTC	4 cut(s)	26, 639, 905, 1241
Eam1105I	GACNNNNNGTC	1 cut(s)	744
EarI	CTCTTC	4 cut(s)	26, 639, 905, 1241
Ecl136II	GAGCTC	1 cut(s)	758
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	2 cut(s)	760, 1236
Eco31I	GGTCTC	1 cut(s)	477
Eco47I	GGWCC	4 cut(s)	80, 784, 1017, 1190
Eco53kI	GAGCTC	1 cut(s)	758
Eco57I	CTGAAG	1 cut(s)	929
EcoICRI	GAGCTC	1 cut(s)	758
EcoO109I	RGGNCCY	2 cut(s)	1017, 1190
EcoRII	CCWGG	1 cut(s)	898
EcoT14I	CCWWGG	1 cut(s)	264
EcoT22I	ATGCAT	2 cut(s)	391, 574
EcoT38I	GRGCYC	2 cut(s)	760, 1236
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	6 cut(s)	268, 572, 674, 998, 1211, 1262
FalI	AAGNNNNNCTT	2 cut(s)	1302, 1334
FaqI	GGGAC	2 cut(s)	1030, 1176
FatI	CATG	6 cut(s)	264, 568, 670, 994, 1207, 1258
FauI	CCCGC	1 cut(s)	1007
FauNDI	CATATG	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	790
Fnu4HI	GCNGC	1 cut(s)	53
FokI	GGATG	1 cut(s)	509
FriOI	GRGCYC	2 cut(s)	760, 1236
Fsp4HI	GCNGC	1 cut(s)	53
FspBI	CTAG	2 cut(s)	144, 728
GluI	GCNGC	1 cut(s)	53
GsuI	CTGGAG	1 cut(s)	1107
HaeIII	GGCC	1 cut(s)	903
HapII	CCGG	1 cut(s)	1180
Hin1II	CATG	6 cut(s)	268, 572, 674, 998, 1211, 1262
HincII	GTYRAC	2 cut(s)	283, 591
HindII	GTYRAC	2 cut(s)	283, 591
HindIII	AAGCTT	1 cut(s)	1316
HinfI	GANTC	2 cut(s)	1154, 1271
HpaII	CCGG	1 cut(s)	1180
HphI	GGTGA	6 cut(s)	280, 449, 898, 1014, 1082, 1160
Hpy166II	GTNNAC	3 cut(s)	283, 591, 791
Hpy188I	TCNGA	6 cut(s)	47, 430, 876, 1030, 1159, 1278
Hpy188III	TCNNGA	6 cut(s)	233, 659, 728, 769, 1193, 1298
Hpy8I	GTNNAC	3 cut(s)	283, 591, 791
Hpy99I	CGWCG	2 cut(s)	598, 1199
HpyAV	CCTTC	7 cut(s)	189, 205, 301, 538, 595, 656, 1035
HpyCH4III	ACNGT	3 cut(s)	120, 471, 744
HpyCH4V	TGCA	9 cut(s)	129, 248, 350, 374, 389, 572, 819, 1114, 1258
HpyF10VI	GCNNNNNNNGC	4 cut(s)	347, 712, 1081, 1264
HpyF3I	CTNAG	7 cut(s)	295, 302, 312, 585, 624, 810, 1275
Hsp92II	CATG	6 cut(s)	268, 572, 674, 998, 1211, 1262
KflI	GGGWCCC	1 cut(s)	1190
KpnI	GGTACC	1 cut(s)	1180
Kzo9I	GATC	5 cut(s)	724, 813, 1105, 1159, 1287
LmnI	GCTCC	3 cut(s)	755, 763, 1199
LweI	GCATC	6 cut(s)	261, 376, 520, 581, 1084, 1254
MaeI	CTAG	2 cut(s)	144, 728
MaeIII	GTNAC	2 cut(s)	684, 886
MalI	GATC	5 cut(s)	726, 815, 1107, 1161, 1289
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	5 cut(s)	724, 813, 1105, 1159, 1287
MboII	GAAGA	8 cut(s)	13, 248, 446, 553, 610, 656, 922, 1258
MfeI	CAATTG	1 cut(s)	26
MflI	RGATCY	2 cut(s)	813, 1287
MhlI	GDGCHC	2 cut(s)	760, 1236
MmeI	TCCRAC	1 cut(s)	733
Mph1103I	ATGCAT	2 cut(s)	391, 574
MroXI	GAANNNNTTC	1 cut(s)	424
MseI	TTAA	3 cut(s)	485, 654, 1164
MslI	CAYNNNNRTG	2 cut(s)	269, 675
MspCI	CTTAAG	1 cut(s)	1163
MspI	CCGG	1 cut(s)	1180
MspR9I	CCNGG	1 cut(s)	900
MunI	CAATTG	1 cut(s)	26
Mva1269I	GAATGC	2 cut(s)	248, 1016
MvaI	CCWGG	1 cut(s)	900
MwoI	GCNNNNNNNGC	4 cut(s)	347, 712, 1081, 1264
NcoI	CCATGG	1 cut(s)	264
NdeI	CATATG	1 cut(s)	151
NdeII	GATC	5 cut(s)	724, 813, 1105, 1159, 1287
NlaIII	CATG	6 cut(s)	268, 572, 674, 998, 1211, 1262
NlaIV	GGNNCC	5 cut(s)	1018, 1178, 1191, 1192, 1289
NmeAIII	GCCGAG	1 cut(s)	1264
NmuCI	GTSAC	1 cut(s)	886
NsiI	ATGCAT	2 cut(s)	391, 574
NspI	RCATGY	2 cut(s)	572, 674
PciI	ACATGT	1 cut(s)	670
PctI	GAATGC	2 cut(s)	248, 1016
PdmI	GAANNNNTTC	1 cut(s)	424
PfeI	GAWTC	2 cut(s)	1154, 1271
PkrI	GCNGC	1 cut(s)	54
PpuMI	RGGWCCY	2 cut(s)	1017, 1190
PscI	ACATGT	1 cut(s)	670
Psp124BI	GAGCTC	1 cut(s)	760
Psp5II	RGGWCCY	2 cut(s)	1017, 1190
Psp6I	CCWGG	1 cut(s)	898
PspGI	CCWGG	1 cut(s)	898
PspN4I	GGNNCC	5 cut(s)	1018, 1178, 1191, 1192, 1289
PspPI	GGNCC	4 cut(s)	80, 784, 1017, 1190
PspPPI	RGGWCCY	2 cut(s)	1017, 1190
PsuI	RGATCY	2 cut(s)	813, 1287
RsaI	GTAC	5 cut(s)	117, 177, 293, 720, 1178
RsaNI	GTAC	5 cut(s)	116, 176, 292, 719, 1177
RseI	CAYNNNNRTG	2 cut(s)	269, 675
SacI	GAGCTC	1 cut(s)	760
SaqAI	TTAA	3 cut(s)	485, 654, 1164
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	5 cut(s)	724, 813, 1105, 1159, 1287
Sau96I	GGNCC	4 cut(s)	80, 784, 1017, 1190
ScaI	AGTACT	2 cut(s)	117, 720
ScrFI	CCNGG	1 cut(s)	900
SduI	GDGCHC	2 cut(s)	760, 1236
SfaNI	GCATC	6 cut(s)	261, 376, 520, 581, 1084, 1254
SinI	GGWCC	4 cut(s)	80, 784, 1017, 1190
SmiMI	CAYNNNNRTG	2 cut(s)	269, 675
SmlI	CTYRAG	1 cut(s)	1163
SmoI	CTYRAG	1 cut(s)	1163
SsiI	CCGC	4 cut(s)	53, 83, 978, 1014
SspI	AATATT	1 cut(s)	346
SspMI	CTAG	2 cut(s)	144, 728
SstI	GAGCTC	1 cut(s)	760
StyD4I	CCNGG	1 cut(s)	898
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	3 cut(s)	120, 471, 744
TaqI	TCGA	3 cut(s)	225, 642, 675
TatI	WGTACW	3 cut(s)	115, 291, 718
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	2 cut(s)	1154, 1271
Tru1I	TTAA	3 cut(s)	485, 654, 1164
Tru9I	TTAA	3 cut(s)	485, 654, 1164
TscAI	CASTG	4 cut(s)	747, 1009, 1131, 1144
TseFI	GTSAC	1 cut(s)	886
Tsp45I	GTSAC	1 cut(s)	886
TspDTI	ATGAA	6 cut(s)	168, 410, 522, 1196, 1235, 1239
TspGWI	ACGGA	3 cut(s)	402, 776, 1212
TspRI	CASTG	4 cut(s)	747, 1009, 1131, 1144
Vha464I	CTTAAG	1 cut(s)	1163
VpaK11BI	GGWCC	4 cut(s)	80, 784, 1017, 1190
XapI	RAATTY	2 cut(s)	69, 433
XbaI	TCTAGA	1 cut(s)	727
XceI	RCATGY	2 cut(s)	572, 674
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1001
XmiI	GTMKAC	1 cut(s)	790
XmnI	GAANNNNTTC	1 cut(s)	424
XspI	CTAG	2 cut(s)	144, 728
ZrmI	AGTACT	2 cut(s)	117, 720
Zsp2I	ATGCAT	2 cut(s)	391, 574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.