Rw1G015360

Nucleolar GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0005154
Physical Location & Seq
Forward (+)
34240150 .. 34245819
5670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G015360.1

Sequence Viewer

Length: 966 bp
ATGATAGTTAGCCTTCTGTGTATGTTTTCAGGAAATAGCAGTTCCTTTAAGGACTTTTCGGAGAACTTTCCCAATAAGAAGTATCTTCACCCTTATGAGCGATCTCTTATTGAATTAACTCTCGGGGATGGAAATTATGAACAGGTATTGGGAAAGGTGGATGCTCTGAGGAAAAAGGTTGTGTCTGTTGGAAAGGAACATGCATCTCTATGTGCTAAGTCAACGTCGAAGAAGGAAGCAGAGACAAGACTGAGTGAGGGTTTAAAGAAAGTTGAGGAGACATATATTCGTCAAGGAAAATATGTTGATGATTTGTTACACATAGCCAAGACATTGCGAGCAATGCCGGTAGTTGATCTAGAAACACCAACACTTTGTCTTGTTGGAGCTCCTAATGTTGGGAAGTCATCTTTGGTTCGTATACTCTCCACAGGGAAGCCTGAGGTCTGCAACTACCCTTTCACAACAAGAGGAATACTAATGGGTCATATCATTTTAAACCATGAGACTTTTCAGGTGACTGATACTCCGGGCCTGCTGAAGAGATGTGATGAGGACAGAAATAATTTGGAAAAATTGACACTTGCTGTCCTCTCACATCTGCCAACTGCAGTACTGTATGTCCATGATCTTTCTGGAGAATGTGGGACCTCACCTACTGATCAGTTTGTCATATACAATGAAATAAAGGAGAAATTCGGTGACCATCTGTGGCTTGATGTTGTGTCCAAATGCGATCTATTGCAAGAGTCTCCAGTGCTATTTGCTACTGATAATGGCGATGATAATGATCTTGACCTGGCAAGGTACCGGAAATTGGGTCCTGAGGGAGCTCTTCATGTGTCAGTGAAAAATGAAGTAGGGCTCCCAGAGTTAAAAAGAAGAGTGCATGAACTGCTGAATACCCAAATGACCAGGATCCAAAGTCTGGAAACCAACCAAGAAACTCTTCAAGTTCTTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
MMR_HSR1 NOG1

Protein Analysis

321

Amino Acids

35.91

Weight (kDa)

5.96

Isoelectric Point (pI)

35.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOG1_N PF17835 15 - 119 4.1e-29 NOG1 N-terminal helical domain
FeoB_N PF02421 124 - 181 3.1e-09 Ferrous iron transport protein B
MMR_HSR1 PF01926 125 - 222 2.2e-16 50S ribosome-binding GTPase
NOG1 PF06858 190 - 246 1.7e-17 Nucleolar GTP-binding protein 1 (NOG1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 807
AccB1I GGYRCC 1 cut(s) 807
AccB7I CCANNNNNTGG 1 cut(s) 928
AccI GTMKAC 1 cut(s) 421
AclWI GGATC 2 cut(s) 913, 926
AcsI RAATTY 1 cut(s) 695
AcuI CTGAAG 1 cut(s) 560
AfaI GTAC 2 cut(s) 615, 809
AfiI CCNNNNNNNGG 3 cut(s) 398, 817, 928
AgsI TTSAA 2 cut(s) 113, 953
AjnI CCWGG 2 cut(s) 798, 914
AjuI GAANNNNNNNTTGG 4 cut(s) 395, 427, 933, 965
AluBI AGCT 2 cut(s) 389, 833
AluI AGCT 2 cut(s) 389, 833
Alw21I GWGCWC 2 cut(s) 391, 835
Alw26I GTCTC 4 cut(s) 236, 272, 500, 756
AlwI GGATC 2 cut(s) 913, 926
Ama87I CYCGRG 1 cut(s) 122
AoxI GGCC 1 cut(s) 532
ApoI RAATTY 1 cut(s) 695
Asp700I GAANNNNTTC 1 cut(s) 948
Asp718I GGTACC 1 cut(s) 807
AspS9I GGNCC 3 cut(s) 532, 648, 821
AsuC2I CCSGG 1 cut(s) 531
AsuHPI GGTGA 4 cut(s) 80, 529, 645, 713
AvaI CYCGRG 1 cut(s) 122
AvaII GGWCC 2 cut(s) 648, 821
AxyI CCTNAGG 2 cut(s) 441, 825
BamHI GGATCC 1 cut(s) 918
BanI GGYRCC 1 cut(s) 807
BanII GRGCYC 3 cut(s) 391, 835, 867
Bbv12I GWGCWC 2 cut(s) 391, 835
BccI CCATC 2 cut(s) 122, 714
BciT130I CCWGG 2 cut(s) 800, 916
BclI TGATCA 1 cut(s) 661
BcnI CCSGG 1 cut(s) 531
BcoDI GTCTC 4 cut(s) 236, 272, 500, 756
BfaI CTAG 1 cut(s) 359
BfmI CTRYAG 1 cut(s) 609
BmcAI AGTACT 1 cut(s) 615
Bme1390I CCNGG 3 cut(s) 531, 800, 916
Bme18I GGWCC 2 cut(s) 648, 821
BmeT110I CYCGRG 1 cut(s) 122
BmgT120I GGNCC 3 cut(s) 532, 648, 821
BmiI GGNNCC 5 cut(s) 649, 809, 822, 866, 920
BmrFI CCNGG 3 cut(s) 531, 800, 916
BmsI GCATC 2 cut(s) 151, 212
BpmI CTGGAG 2 cut(s) 657, 738
BpuMI CCSGG 1 cut(s) 531
BsaBI GATNNNNATC 1 cut(s) 789
BsaWI WCCGGW 1 cut(s) 810
BsaXI ACNNNNNCTCC 2 cut(s) 511, 541
Bsc4I CCNNNNNNNGG 3 cut(s) 398, 817, 928
Bse118I RCCGGY 1 cut(s) 346
Bse1I ACTGG 1 cut(s) 755
Bse21I CCTNAGG 2 cut(s) 441, 825
Bse3DI GCAATG 2 cut(s) 332, 348
Bse8I GATNNNNATC 1 cut(s) 789
BseBI CCWGG 2 cut(s) 800, 916
BseGI GGATG 2 cut(s) 133, 166
BseJI GATNNNNATC 1 cut(s) 789
BseLI CCNNNNNNNGG 3 cut(s) 398, 817, 928
BseMI GCAATG 2 cut(s) 332, 348
BseMII CTCAG 4 cut(s) 158, 242, 432, 816
BseNI ACTGG 1 cut(s) 755
BseRI GAGGAG 1 cut(s) 290
BshFI GGCC 1 cut(s) 534
BshNI GGYRCC 1 cut(s) 807
BsiHKAI GWGCWC 2 cut(s) 391, 835
BsiHKCI CYCGRG 1 cut(s) 122
BsiSI CCGG 3 cut(s) 347, 530, 811
BslFI GGGAC 1 cut(s) 661
BslI CCNNNNNNNGG 3 cut(s) 398, 817, 928
BsmAI GTCTC 4 cut(s) 236, 272, 500, 756
BsmFI GGGAC 1 cut(s) 661
BsnI GGCC 1 cut(s) 534
BsoBI CYCGRG 1 cut(s) 122
Bsp1286I GDGCHC 3 cut(s) 391, 835, 867
Bsp143I GATC 7 cut(s) 101, 355, 628, 661, 736, 790, 918
BspANI GGCC 1 cut(s) 534
BspCNI CTCAG 4 cut(s) 159, 243, 433, 817
BspLI GGNNCC 5 cut(s) 649, 809, 822, 866, 920
BspMAI CTGCAG 1 cut(s) 613
BspPI GGATC 2 cut(s) 913, 926
BspQI GCTCTTC 1 cut(s) 840
BspT107I GGYRCC 1 cut(s) 807
BsrDI GCAATG 2 cut(s) 332, 348
BsrFI RCCGGY 1 cut(s) 346
BsrI ACTGG 1 cut(s) 755
BssAI RCCGGY 1 cut(s) 346
BssMI GATC 7 cut(s) 101, 355, 628, 661, 736, 790, 918
BssNAI GTATAC 1 cut(s) 422
Bst1107I GTATAC 1 cut(s) 422
Bst2UI CCWGG 2 cut(s) 800, 916
Bst4CI ACNGT 1 cut(s) 618
Bst6I CTCTTC 4 cut(s) 536, 840, 877, 954
BstAPI GCANNNNNTGC 1 cut(s) 895
BstC8I GCNNGC 2 cut(s) 339, 536
BstDEI CTNAG 5 cut(s) 167, 216, 251, 441, 825
BstEII GGTNACC 1 cut(s) 701
BstF5I GGATG 2 cut(s) 133, 166
BstKTI GATC 7 cut(s) 104, 358, 631, 664, 739, 793, 921
BstMAI GTCTC 4 cut(s) 236, 272, 500, 756
BstMBI GATC 7 cut(s) 101, 355, 628, 661, 736, 790, 918
BstMWI GCNNNNNNNGC 2 cut(s) 343, 895
BstNI CCWGG 2 cut(s) 800, 916
BstNSI RCATGY 1 cut(s) 203
BstPI GGTNACC 1 cut(s) 701
BstSCI CCNGG 3 cut(s) 529, 798, 914
BstSFI CTRYAG 1 cut(s) 609
BstX2I RGATCY 1 cut(s) 918
BstYI RGATCY 1 cut(s) 918
BstZ17I GTATAC 1 cut(s) 422
Bsu36I CCTNAGG 2 cut(s) 441, 825
BsuRI GGCC 1 cut(s) 534
BtgZI GCGATG 1 cut(s) 795
BtsCI GGATG 2 cut(s) 133, 166
BtsIMutI CAGTG 2 cut(s) 762, 852
Cac8I GCNNGC 2 cut(s) 339, 536
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 3 cut(s) 532, 648, 821
Csp6I GTAC 2 cut(s) 614, 808
CviAII CATG 5 cut(s) 200, 503, 626, 839, 890
CviJI RGCY 8 cut(s) 12, 326, 389, 439, 534, 715, 833, 865
CviKI_1 RGCY 8 cut(s) 12, 326, 389, 439, 534, 715, 833, 865
CviQI GTAC 2 cut(s) 614, 808
DdeI CTNAG 5 cut(s) 167, 216, 251, 441, 825
DpnI GATC 7 cut(s) 103, 357, 630, 663, 738, 792, 920
DpnII GATC 7 cut(s) 101, 355, 628, 661, 736, 790, 918
DraI TTTAAA 2 cut(s) 264, 498
Eam1104I CTCTTC 4 cut(s) 536, 840, 877, 954
EarI CTCTTC 4 cut(s) 536, 840, 877, 954
Ecl136II GAGCTC 2 cut(s) 389, 833
Eco24I GRGCYC 3 cut(s) 391, 835, 867
Eco47I GGWCC 2 cut(s) 648, 821
Eco53kI GAGCTC 2 cut(s) 389, 833
Eco57I CTGAAG 1 cut(s) 560
Eco81I CCTNAGG 2 cut(s) 441, 825
Eco88I CYCGRG 1 cut(s) 122
Eco91I GGTNACC 1 cut(s) 701
EcoICRI GAGCTC 2 cut(s) 389, 833
EcoO109I RGGNCCY 2 cut(s) 648, 821
EcoO65I GGTNACC 1 cut(s) 701
EcoRII CCWGG 2 cut(s) 798, 914
EcoT22I ATGCAT 1 cut(s) 205
EcoT38I GRGCYC 3 cut(s) 391, 835, 867
FaeI CATG 5 cut(s) 203, 506, 629, 842, 893
FalI AAGNNNNNCTT 2 cut(s) 933, 965
FaqI GGGAC 1 cut(s) 661
FatI CATG 5 cut(s) 199, 502, 625, 838, 889
FbaI TGATCA 1 cut(s) 661
FblI GTMKAC 1 cut(s) 421
FokI GGATG 2 cut(s) 140, 173
FriOI GRGCYC 3 cut(s) 391, 835, 867
FspBI CTAG 1 cut(s) 359
GsuI CTGGAG 2 cut(s) 657, 738
HaeIII GGCC 1 cut(s) 534
HapII CCGG 3 cut(s) 347, 530, 811
Hin1II CATG 5 cut(s) 203, 506, 629, 842, 893
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 1 cut(s) 749
HpaII CCGG 3 cut(s) 347, 530, 811
HphI GGTGA 4 cut(s) 80, 529, 645, 713
Hpy166II GTNNAC 2 cut(s) 222, 422
Hpy188I TCNGA 2 cut(s) 61, 168
Hpy188III TCNNGA 6 cut(s) 30, 359, 636, 794, 824, 929
Hpy8I GTNNAC 2 cut(s) 222, 422
Hpy99I CGWCG 1 cut(s) 229
HpyAV CCTTC 2 cut(s) 23, 226
HpyCH4III ACNGT 1 cut(s) 618
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 5 cut(s) 203, 450, 611, 745, 889
HpyF10VI GCNNNNNNNGC 2 cut(s) 343, 895
HpyF3I CTNAG 5 cut(s) 167, 216, 251, 441, 825
HpySE526I ACGT 1 cut(s) 224
Hsp92II CATG 5 cut(s) 203, 506, 629, 842, 893
KpnI GGTACC 1 cut(s) 811
Ksp22I TGATCA 1 cut(s) 661
Kzo9I GATC 7 cut(s) 101, 355, 628, 661, 736, 790, 918
LguI GCTCTTC 1 cut(s) 840
LmnI GCTCC 4 cut(s) 386, 394, 830, 870
LweI GCATC 2 cut(s) 151, 212
MaeI CTAG 1 cut(s) 359
MaeII ACGT 1 cut(s) 224
MaeIII GTNAC 3 cut(s) 315, 517, 701
MalI GATC 7 cut(s) 103, 357, 630, 663, 738, 792, 920
MboI GATC 7 cut(s) 101, 355, 628, 661, 736, 790, 918
MboII GAAGA 6 cut(s) 77, 241, 553, 827, 894, 941
MflI RGATCY 1 cut(s) 918
MhlI GDGCHC 3 cut(s) 391, 835, 867
MluCI AATT 6 cut(s) 113, 133, 565, 575, 695, 815
MlyI GAGTC 1 cut(s) 758
MmeI TCCRAC 2 cut(s) 169, 364
MnlI CCTC 9 cut(s) 162, 250, 268, 436, 464, 547, 602, 661, 820
Mph1103I ATGCAT 1 cut(s) 205
MroXI GAANNNNTTC 1 cut(s) 948
MseI TTAA 5 cut(s) 48, 116, 263, 497, 875
MslI CAYNNNNRTG 2 cut(s) 93, 208
MspI CCGG 3 cut(s) 347, 530, 811
MspR9I CCNGG 3 cut(s) 531, 800, 916
MvaI CCWGG 2 cut(s) 800, 916
MwoI GCNNNNNNNGC 2 cut(s) 343, 895
NciI CCSGG 1 cut(s) 531
NdeII GATC 7 cut(s) 101, 355, 628, 661, 736, 790, 918
NlaIII CATG 5 cut(s) 203, 506, 629, 842, 893
NlaIV GGNNCC 5 cut(s) 649, 809, 822, 866, 920
NmuCI GTSAC 2 cut(s) 517, 701
NsiI ATGCAT 1 cut(s) 205
NspI RCATGY 1 cut(s) 203
PciSI GCTCTTC 1 cut(s) 840
PdmI GAANNNNTTC 1 cut(s) 948
PflMI CCANNNNNTGG 1 cut(s) 928
PleI GAGTC 1 cut(s) 757
PpsI GAGTC 1 cut(s) 757
PpuMI RGGWCCY 2 cut(s) 648, 821
Psp124BI GAGCTC 2 cut(s) 391, 835
Psp5II RGGWCCY 2 cut(s) 648, 821
Psp6I CCWGG 2 cut(s) 798, 914
PspEI GGTNACC 1 cut(s) 701
PspGI CCWGG 2 cut(s) 798, 914
PspN4I GGNNCC 5 cut(s) 649, 809, 822, 866, 920
PspPI GGNCC 3 cut(s) 532, 648, 821
PspPPI RGGWCCY 2 cut(s) 648, 821
PstI CTGCAG 1 cut(s) 613
PsuI RGATCY 1 cut(s) 918
RsaI GTAC 2 cut(s) 615, 809
RsaNI GTAC 2 cut(s) 614, 808
RseI CAYNNNNRTG 2 cut(s) 93, 208
SacI GAGCTC 2 cut(s) 391, 835
SapI GCTCTTC 1 cut(s) 840
SaqAI TTAA 5 cut(s) 48, 116, 263, 497, 875
Sau3AI GATC 7 cut(s) 101, 355, 628, 661, 736, 790, 918
Sau96I GGNCC 3 cut(s) 532, 648, 821
ScaI AGTACT 1 cut(s) 615
SchI GAGTC 1 cut(s) 758
ScrFI CCNGG 3 cut(s) 531, 800, 916
SduI GDGCHC 3 cut(s) 391, 835, 867
SfaNI GCATC 2 cut(s) 151, 212
SfcI CTRYAG 1 cut(s) 609
SinI GGWCC 2 cut(s) 648, 821
SmiMI CAYNNNNRTG 2 cut(s) 93, 208
Sse9I AATT 6 cut(s) 113, 133, 565, 575, 695, 815
SspMI CTAG 1 cut(s) 359
SstI GAGCTC 2 cut(s) 391, 835
StyD4I CCNGG 3 cut(s) 529, 798, 914
TaaI ACNGT 1 cut(s) 618
TaiI ACGT 1 cut(s) 227
TaqI TCGA 1 cut(s) 227
TasI AATT 6 cut(s) 113, 133, 565, 575, 695, 815
TatI WGTACW 1 cut(s) 613
Tru1I TTAA 5 cut(s) 48, 116, 263, 497, 875
Tru9I TTAA 5 cut(s) 48, 116, 263, 497, 875
TscAI CASTG 2 cut(s) 762, 852
TseFI GTSAC 2 cut(s) 517, 701
Tsp45I GTSAC 2 cut(s) 517, 701
TspDTI ATGAA 5 cut(s) 153, 696, 827, 870, 906
TspRI CASTG 2 cut(s) 762, 852
Van91I CCANNNNNTGG 1 cut(s) 928
VpaK11BI GGWCC 2 cut(s) 648, 821
XapI RAATTY 1 cut(s) 695
XbaI TCTAGA 1 cut(s) 358
XceI RCATGY 1 cut(s) 203
XcmI CCANNNNNNNNNTGG 1 cut(s) 632
XmiI GTMKAC 1 cut(s) 421
XmnI GAANNNNTTC 1 cut(s) 948
XspI CTAG 1 cut(s) 359
ZrmI AGTACT 1 cut(s) 615
Zsp2I ATGCAT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.