Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007032.1

Orthogroup ID

OG0005154

Physical Location & Seq

Genomic Coordinates Forward (+)

14224 .. 21708

Gene Structure 7485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007032.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

atgagcagggcttgcagtctcttccaactatggcacagtcctccagacaccagattactactctcaatcaccaaagggccgtacttgatacctagtgccagaagttatccaggtctgtgcttctgtaagggtttacagacttctacataccaagttgtcaggggaagctatgtacccacctcccagattaaacaagaaagtaaaactgaggaaaaatctccagaaaaacttgaaggtgttggtgcatttcagaagctaccaatggtaatgccatccgttgacattctttattcagcactaaggaaggctaagaaaattgcaccaacaaaaggcattgccaatattgcaaagagagaaagaaatagaggtgcaaagcaacttgatgcattgatgaaagaaatagcagttcctttaaggacttattcggagaactttcccaataagaagtatcttcacccttacgagcgatctcttattgaattaactctcggggatggaaattatgaacaggtattgggaaaggtggatgctctgaggaaaaaggttgtttctgttggaaaggaacatgcatctctatgtgctaaggttgatatctcgtcaacgtcgaagaaggaagcagagacaagactgagtgagggtttaaagaaagttgaggagacatatattcgtcaaggaaaatatgttgatgatttgttacacatagccaagacattgcgagcaatgccggtagttgatctagaaacaccaacactttgtcttgttggagctcctaatgttgggaagtcatctttggttcgtatactctccacagggaagcctgaggtctgcaactaccctttcacaacaagaggaatcctaatgggtcatatcattttaaaccatgagacttttcaggtgactgatactccgggcctgctgaagagatgtgatgaggacagaaataatttggaaaaattgacacttgctgtcctctcacatctgccaactgcagtactgtatgtccatgatctttctggagaatgtgggacctcacctactgatcagtttgtcatatacaatgaaataaaggagaaattcggtgaccatctgtggcttgatgttgtgtccaaatgcgatctattgcaagagtctccagtgctatttgctactgataatggcgatgataatgatcttgacctggcaaggtaccggaaattgggccctgagggagctcttcatgtgtcagtgaaaaatgaagtagggctctcagagttaaaaagaagagtgcatgaactgctgaatacccaaatgaccaggatccaaagtctggaaaccaaccaagaaactcttcaagttcttacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

MMR_HSR1 NOG1

Protein Analysis

447

Amino Acids

49.92

Weight (kDa)

8.65

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80770 AT1G80770 AT1G80770 AT1G80770 AT1G80770 AT1G80770
fragaria_vesca	FvH4_7g08680 FvH4_7g08680
malus_domestica	MD02G1225900.v1.1 MD07G1087900.v1.1
prunus_persica	Prupe.2G114600_v2.0.a1
pyrus_communis	pycom02g19460 pycom07g07050
rosa_chinensis	RchiOBHm_Chr1g0343911
rosa_laevigata	RLG00000028949
rosa_multiflora	Rmu_sc0007032.1_g000002 Rmu_sc0007696.1_g000024
rosa_roxburghii	Rroxscaffold_4G00310300
rosa_rugosa	Rorug01G0169100 Rorug01G0169200 Rorug01G0169300
rosa_samantha	Rh1AG185700 Rh1BG125600 Rh1BG152500 Rh1CG171500 Rh1DG184500 Rh6BG211600 Rh6BG212200
rosa_wichuraiana	Rw1G015320 Rw1G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1185
AccB1I	GGYRCC	1 cut(s)	1185
AccB7I	CCANNNNNTGG	1 cut(s)	1306
AccI	GTMKAC	1 cut(s)	799
AclWI	GGATC	2 cut(s)	1291, 1304
AcsI	RAATTY	1 cut(s)	1073
AcuI	CTGAAG	1 cut(s)	938
AfaI	GTAC	4 cut(s)	83, 174, 993, 1187
AfiI	CCNNNNNNNGG	4 cut(s)	329, 776, 1195, 1306
AgsI	TTSAA	3 cut(s)	233, 479, 1331
AjnI	CCWGG	3 cut(s)	109, 1176, 1292
AjuI	GAANNNNNNNTTGG	4 cut(s)	773, 805, 1311, 1343
AluBI	AGCT	4 cut(s)	168, 256, 767, 1211
AluI	AGCT	4 cut(s)	168, 256, 767, 1211
Alw21I	GWGCWC	2 cut(s)	769, 1213
Alw26I	GTCTC	5 cut(s)	23, 614, 650, 878, 1134
AlwI	GGATC	2 cut(s)	1291, 1304
Ama87I	CYCGRG	1 cut(s)	488
AoxI	GGCC	3 cut(s)	77, 910, 1198
ApaI	GGGCCC	1 cut(s)	1202
ApoI	RAATTY	1 cut(s)	1073
Asp700I	GAANNNNTTC	1 cut(s)	1326
Asp718I	GGTACC	1 cut(s)	1185
AspS9I	GGNCC	5 cut(s)	77, 910, 1026, 1198, 1199
AsuC2I	CCSGG	1 cut(s)	909
AsuHPI	GGTGA	5 cut(s)	61, 446, 907, 1023, 1091
AvaI	CYCGRG	1 cut(s)	488
AvaII	GGWCC	1 cut(s)	1026
AxyI	CCTNAGG	2 cut(s)	819, 1203
BaeGI	GKGCMC	1 cut(s)	1202
BamHI	GGATCC	1 cut(s)	1296
BanI	GGYRCC	1 cut(s)	1185
BanII	GRGCYC	4 cut(s)	769, 1202, 1213, 1245
Bbv12I	GWGCWC	2 cut(s)	769, 1213
BccI	CCATC	3 cut(s)	280, 488, 1092
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	3 cut(s)	111, 1178, 1294
BclI	TGATCA	1 cut(s)	1039
BcnI	CCSGG	1 cut(s)	909
BcoDI	GTCTC	5 cut(s)	23, 614, 650, 878, 1134
BfaI	CTAG	2 cut(s)	93, 737
BfmI	CTRYAG	1 cut(s)	987
BmcAI	AGTACT	1 cut(s)	993
Bme1390I	CCNGG	4 cut(s)	111, 909, 1178, 1294
Bme18I	GGWCC	1 cut(s)	1026
BmeT110I	CYCGRG	1 cut(s)	488
BmgT120I	GGNCC	5 cut(s)	77, 910, 1026, 1198, 1199
BmiI	GGNNCC	4 cut(s)	1027, 1187, 1200, 1298
BmrFI	CCNGG	4 cut(s)	111, 909, 1178, 1294
BmsI	GCATC	3 cut(s)	373, 517, 578
BpmI	CTGGAG	4 cut(s)	27, 204, 1035, 1116
Bpu10I	CCTNAGC	1 cut(s)	582
BpuMI	CCSGG	1 cut(s)	909
BsaBI	GATNNNNATC	1 cut(s)	1167
BsaWI	WCCGGW	1 cut(s)	1188
BsaXI	ACNNNNNCTCC	2 cut(s)	889, 919
Bsc4I	CCNNNNNNNGG	4 cut(s)	329, 776, 1195, 1306
Bse118I	RCCGGY	1 cut(s)	724
Bse1I	ACTGG	1 cut(s)	1133
Bse21I	CCTNAGG	2 cut(s)	819, 1203
Bse3DI	GCAATG	3 cut(s)	333, 710, 726
Bse8I	GATNNNNATC	1 cut(s)	1167
BseBI	CCWGG	3 cut(s)	111, 1178, 1294
BseGI	GGATG	3 cut(s)	272, 499, 532
BseJI	GATNNNNATC	1 cut(s)	1167
BseLI	CCNNNNNNNGG	4 cut(s)	329, 776, 1195, 1306
BseMI	GCAATG	3 cut(s)	333, 710, 726
BseMII	CTCAG	6 cut(s)	198, 524, 620, 810, 1194, 1260
BseNI	ACTGG	1 cut(s)	1133
BseRI	GAGGAG	1 cut(s)	668
BseSI	GKGCMC	1 cut(s)	1202
BshFI	GGCC	3 cut(s)	79, 912, 1200
BshNI	GGYRCC	1 cut(s)	1185
BsiHKAI	GWGCWC	2 cut(s)	769, 1213
BsiHKCI	CYCGRG	1 cut(s)	488
BsiSI	CCGG	3 cut(s)	725, 908, 1189
BslFI	GGGAC	1 cut(s)	1039
BslI	CCNNNNNNNGG	4 cut(s)	329, 776, 1195, 1306
BsmAI	GTCTC	5 cut(s)	23, 614, 650, 878, 1134
BsmFI	GGGAC	1 cut(s)	1039
BsnI	GGCC	3 cut(s)	79, 912, 1200
BsoBI	CYCGRG	1 cut(s)	488
Bsp120I	GGGCCC	1 cut(s)	1198
Bsp1286I	GDGCHC	4 cut(s)	769, 1202, 1213, 1245
Bsp143I	GATC	7 cut(s)	467, 733, 1006, 1039, 1114, 1168, 1296
BspANI	GGCC	3 cut(s)	79, 912, 1200
BspCNI	CTCAG	6 cut(s)	199, 525, 621, 811, 1195, 1259
BspLI	GGNNCC	4 cut(s)	1027, 1187, 1200, 1298
BspMAI	CTGCAG	1 cut(s)	991
BspPI	GGATC	2 cut(s)	1291, 1304
BspQI	GCTCTTC	1 cut(s)	1218
BspT107I	GGYRCC	1 cut(s)	1185
BsrDI	GCAATG	3 cut(s)	333, 710, 726
BsrFI	RCCGGY	1 cut(s)	724
BsrI	ACTGG	1 cut(s)	1133
BssAI	RCCGGY	1 cut(s)	724
BssMI	GATC	7 cut(s)	467, 733, 1006, 1039, 1114, 1168, 1296
BssNAI	GTATAC	1 cut(s)	800
Bst1107I	GTATAC	1 cut(s)	800
Bst2UI	CCWGG	3 cut(s)	111, 1178, 1294
Bst4CI	ACNGT	2 cut(s)	38, 996
Bst6I	CTCTTC	5 cut(s)	26, 914, 1218, 1255, 1332
BstAPI	GCANNNNNTGC	2 cut(s)	12, 1273
BstC8I	GCNNGC	3 cut(s)	13, 717, 914
BstDEI	CTNAG	9 cut(s)	207, 299, 309, 533, 582, 629, 819, 1203, 1246
BstEII	GGTNACC	1 cut(s)	1079
BstF5I	GGATG	3 cut(s)	272, 499, 532
BstKTI	GATC	7 cut(s)	470, 736, 1009, 1042, 1117, 1171, 1299
BstMAI	GTCTC	5 cut(s)	23, 614, 650, 878, 1134
BstMBI	GATC	7 cut(s)	467, 733, 1006, 1039, 1114, 1168, 1296
BstMWI	GCNNNNNNNGC	4 cut(s)	12, 344, 721, 1273
BstNI	CCWGG	3 cut(s)	111, 1178, 1294
BstNSI	RCATGY	1 cut(s)	569
BstPI	GGTNACC	1 cut(s)	1079
BstSCI	CCNGG	4 cut(s)	109, 907, 1176, 1292
BstSFI	CTRYAG	1 cut(s)	987
BstSLI	GKGCMC	1 cut(s)	1202
BstX2I	RGATCY	1 cut(s)	1296
BstYI	RGATCY	1 cut(s)	1296
BstZ17I	GTATAC	1 cut(s)	800
Bsu36I	CCTNAGG	2 cut(s)	819, 1203
BsuRI	GGCC	3 cut(s)	79, 912, 1200
BtgZI	GCGATG	1 cut(s)	1173
BtsCI	GGATG	3 cut(s)	272, 499, 532
BtsIMutI	CAGTG	2 cut(s)	1140, 1230
Cac8I	GCNNGC	3 cut(s)	13, 717, 914
Cfr10I	RCCGGY	1 cut(s)	724
Cfr13I	GGNCC	5 cut(s)	77, 910, 1026, 1198, 1199
Csp6I	GTAC	4 cut(s)	82, 173, 992, 1186
CviAII	CATG	5 cut(s)	566, 881, 1004, 1217, 1268
CviQI	GTAC	4 cut(s)	82, 173, 992, 1186
DdeI	CTNAG	9 cut(s)	207, 299, 309, 533, 582, 629, 819, 1203, 1246
DpnI	GATC	7 cut(s)	469, 735, 1008, 1041, 1116, 1170, 1298
DpnII	GATC	7 cut(s)	467, 733, 1006, 1039, 1114, 1168, 1296
DraI	TTTAAA	2 cut(s)	642, 876
Eam1104I	CTCTTC	5 cut(s)	26, 914, 1218, 1255, 1332
EarI	CTCTTC	5 cut(s)	26, 914, 1218, 1255, 1332
Ecl136II	GAGCTC	2 cut(s)	767, 1211
Eco24I	GRGCYC	4 cut(s)	769, 1202, 1213, 1245
Eco32I	GATATC	1 cut(s)	592
Eco47I	GGWCC	1 cut(s)	1026
Eco53kI	GAGCTC	2 cut(s)	767, 1211
Eco57I	CTGAAG	1 cut(s)	938
Eco81I	CCTNAGG	2 cut(s)	819, 1203
Eco88I	CYCGRG	1 cut(s)	488
Eco91I	GGTNACC	1 cut(s)	1079
EcoICRI	GAGCTC	2 cut(s)	767, 1211
EcoO109I	RGGNCCY	2 cut(s)	1026, 1199
EcoO65I	GGTNACC	1 cut(s)	1079
EcoRII	CCWGG	3 cut(s)	109, 1176, 1292
EcoRV	GATATC	1 cut(s)	592
EcoT22I	ATGCAT	2 cut(s)	388, 571
EcoT38I	GRGCYC	4 cut(s)	769, 1202, 1213, 1245
FaeI	CATG	5 cut(s)	569, 884, 1007, 1220, 1271
FalI	AAGNNNNNCTT	2 cut(s)	1311, 1343
FaqI	GGGAC	1 cut(s)	1039
FatI	CATG	5 cut(s)	565, 880, 1003, 1216, 1267
FbaI	TGATCA	1 cut(s)	1039
FblI	GTMKAC	1 cut(s)	799
FokI	GGATG	3 cut(s)	259, 506, 539
FriOI	GRGCYC	4 cut(s)	769, 1202, 1213, 1245
FspBI	CTAG	2 cut(s)	93, 737
GsuI	CTGGAG	4 cut(s)	27, 204, 1035, 1116
HaeIII	GGCC	3 cut(s)	79, 912, 1200
HapII	CCGG	3 cut(s)	725, 908, 1189
Hin1II	CATG	5 cut(s)	569, 884, 1007, 1220, 1271
HincII	GTYRAC	2 cut(s)	280, 600
HindII	GTYRAC	2 cut(s)	280, 600
HinfI	GANTC	2 cut(s)	852, 1127
HpaII	CCGG	3 cut(s)	725, 908, 1189
HphI	GGTGA	5 cut(s)	61, 446, 907, 1023, 1091
Hpy166II	GTNNAC	4 cut(s)	134, 280, 600, 800
Hpy188I	TCNGA	4 cut(s)	252, 427, 534, 1249
Hpy188III	TCNNGA	6 cut(s)	44, 221, 737, 1014, 1172, 1307
Hpy8I	GTNNAC	4 cut(s)	134, 280, 600, 800
Hpy99I	CGWCG	1 cut(s)	607
HpyAV	CCTTC	3 cut(s)	227, 298, 604
HpyCH4III	ACNGT	2 cut(s)	38, 996
HpyCH4IV	ACGT	1 cut(s)	602
HpyF10VI	GCNNNNNNNGC	4 cut(s)	12, 344, 721, 1273
HpyF3I	CTNAG	9 cut(s)	207, 299, 309, 533, 582, 629, 819, 1203, 1246
HpySE526I	ACGT	1 cut(s)	602
Hsp92II	CATG	5 cut(s)	569, 884, 1007, 1220, 1271
KpnI	GGTACC	1 cut(s)	1189
Ksp22I	TGATCA	1 cut(s)	1039
Kzo9I	GATC	7 cut(s)	467, 733, 1006, 1039, 1114, 1168, 1296
LguI	GCTCTTC	1 cut(s)	1218
LmnI	GCTCC	3 cut(s)	764, 772, 1208
LweI	GCATC	3 cut(s)	373, 517, 578
MaeI	CTAG	2 cut(s)	93, 737
MaeII	ACGT	1 cut(s)	602
MaeIII	GTNAC	3 cut(s)	693, 895, 1079
MalI	GATC	7 cut(s)	469, 735, 1008, 1041, 1116, 1170, 1298
MboI	GATC	7 cut(s)	467, 733, 1006, 1039, 1114, 1168, 1296
MboII	GAAGA	7 cut(s)	13, 443, 619, 931, 1205, 1272, 1319
MflI	RGATCY	1 cut(s)	1296
MhlI	GDGCHC	4 cut(s)	769, 1202, 1213, 1245
MluCI	AATT	7 cut(s)	315, 479, 499, 943, 953, 1073, 1193
MlyI	GAGTC	1 cut(s)	1136
MmeI	TCCRAC	3 cut(s)	49, 535, 742
Mph1103I	ATGCAT	2 cut(s)	388, 571
MroXI	GAANNNNTTC	1 cut(s)	1326
MseI	TTAA	6 cut(s)	189, 413, 482, 641, 875, 1253
MslI	CAYNNNNRTG	1 cut(s)	574
MspI	CCGG	3 cut(s)	725, 908, 1189
MspR9I	CCNGG	4 cut(s)	111, 909, 1178, 1294
MvaI	CCWGG	3 cut(s)	111, 1178, 1294
MwoI	GCNNNNNNNGC	4 cut(s)	12, 344, 721, 1273
NciI	CCSGG	1 cut(s)	909
NdeII	GATC	7 cut(s)	467, 733, 1006, 1039, 1114, 1168, 1296
NlaIII	CATG	5 cut(s)	569, 884, 1007, 1220, 1271
NlaIV	GGNNCC	4 cut(s)	1027, 1187, 1200, 1298
NmuCI	GTSAC	2 cut(s)	895, 1079
NsiI	ATGCAT	2 cut(s)	388, 571
NspI	RCATGY	1 cut(s)	569
PciSI	GCTCTTC	1 cut(s)	1218
PcsI	WCGNNNNNNNCGW	1 cut(s)	602
PdmI	GAANNNNTTC	1 cut(s)	1326
PfeI	GAWTC	1 cut(s)	852
PflMI	CCANNNNNTGG	1 cut(s)	1306
PleI	GAGTC	1 cut(s)	1135
PpsI	GAGTC	1 cut(s)	1135
PpuMI	RGGWCCY	1 cut(s)	1026
Psp124BI	GAGCTC	2 cut(s)	769, 1213
Psp5II	RGGWCCY	1 cut(s)	1026
Psp6I	CCWGG	3 cut(s)	109, 1176, 1292
PspEI	GGTNACC	1 cut(s)	1079
PspGI	CCWGG	3 cut(s)	109, 1176, 1292
PspN4I	GGNNCC	4 cut(s)	1027, 1187, 1200, 1298
PspOMI	GGGCCC	1 cut(s)	1198
PspPI	GGNCC	5 cut(s)	77, 910, 1026, 1198, 1199
PspPPI	RGGWCCY	1 cut(s)	1026
PstI	CTGCAG	1 cut(s)	991
PsuI	RGATCY	1 cut(s)	1296
RsaI	GTAC	4 cut(s)	83, 174, 993, 1187
RsaNI	GTAC	4 cut(s)	82, 173, 992, 1186
RseI	CAYNNNNRTG	1 cut(s)	574
SacI	GAGCTC	2 cut(s)	769, 1213
SapI	GCTCTTC	1 cut(s)	1218
SaqAI	TTAA	6 cut(s)	189, 413, 482, 641, 875, 1253
Sau3AI	GATC	7 cut(s)	467, 733, 1006, 1039, 1114, 1168, 1296
Sau96I	GGNCC	5 cut(s)	77, 910, 1026, 1198, 1199
ScaI	AGTACT	1 cut(s)	993
SchI	GAGTC	1 cut(s)	1136
ScrFI	CCNGG	4 cut(s)	111, 909, 1178, 1294
SduI	GDGCHC	4 cut(s)	769, 1202, 1213, 1245
SfaNI	GCATC	3 cut(s)	373, 517, 578
SfcI	CTRYAG	1 cut(s)	987
SinI	GGWCC	1 cut(s)	1026
SmiMI	CAYNNNNRTG	1 cut(s)	574
Sse9I	AATT	7 cut(s)	315, 479, 499, 943, 953, 1073, 1193
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	2 cut(s)	93, 737
SstI	GAGCTC	2 cut(s)	769, 1213
StyD4I	CCNGG	4 cut(s)	109, 907, 1176, 1292
TaaI	ACNGT	2 cut(s)	38, 996
TaiI	ACGT	1 cut(s)	605
TaqI	TCGA	1 cut(s)	605
TasI	AATT	7 cut(s)	315, 479, 499, 943, 953, 1073, 1193
TatI	WGTACW	1 cut(s)	991
TfiI	GAWTC	1 cut(s)	852
Tru1I	TTAA	6 cut(s)	189, 413, 482, 641, 875, 1253
Tru9I	TTAA	6 cut(s)	189, 413, 482, 641, 875, 1253
TscAI	CASTG	2 cut(s)	1140, 1230
TseFI	GTSAC	2 cut(s)	895, 1079
Tsp45I	GTSAC	2 cut(s)	895, 1079
TspDTI	ATGAA	6 cut(s)	407, 519, 1074, 1205, 1248, 1284
TspGWI	ACGGA	1 cut(s)	265
TspRI	CASTG	2 cut(s)	1140, 1230
Van91I	CCANNNNNTGG	1 cut(s)	1306
VpaK11BI	GGWCC	1 cut(s)	1026
XapI	RAATTY	1 cut(s)	1073
XbaI	TCTAGA	1 cut(s)	736
XceI	RCATGY	1 cut(s)	569
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1010
XmiI	GTMKAC	1 cut(s)	799
XmnI	GAANNNNTTC	1 cut(s)	1326
XspI	CTAG	2 cut(s)	93, 737
ZrmI	AGTACT	1 cut(s)	993
Zsp2I	ATGCAT	2 cut(s)	388, 571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.