Rh1BG125600

Nucleolar GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0005154
Physical Location & Seq
Reverse (-)
21277431 .. 21281578
4148 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG125600.1

Sequence Viewer

Length: 822 bp
ATGAGCAGGGCTTGCAGTCTCTTCCAACTGTGGCACAGTCCTCCAGACACCAGATTACTACTCTCAATCACCAAAGGGCCGTACTTGATACCTAGTGCCAGAAGTTATCCAGGTCTGTGCTTCTGTAAGGGTGTACAGACTTCTACATACCAAGTTGTCAGGGGAAGCTATGTTCCCACCTCCCAGATTAAACAAGAAAGTAAAACTGAGGAAAAATCTCCAGAAAAACTTGAAGGTGTTGGTGCATTTCAGAAGCTACCAATGGTAATGCCATCCGTTGACATTCTTTATTCAGCACTAAGGAAGGCTAAGAAAATTGCACCAACAAAAGGCATTGCCAATATTGCAAAGAGAGAAAGAAATAGAGGTGCAAAGCAACTTGATGCATTGATGAAAGAAATAGCAGTTCCTTTAAGGACTTATTCTGAGAACTTTCCCAATAAGAAGTATCTTCACCCTTATGAGCGATCTCTTATTGAATTAACTCTCGGGGATGGAAATTATGAACAGGTATTGGGAAAGGTGGATGCTCTGAGGAAAAAGGTTGTGTCTGTTGGAAAGGAACATGCATCTCTATGTGCTAAGTCAACGTCAAAGAAGGAAGCAGAGACAAGATTGAGTGAGGGTTTAAAGAAAGTTGAGGAGACATATATTCGTCAAGGAAAATATGTTGATGATTTGTTACACATAGCCAAGACATTGCGAGCAATGCCGGTAGTTGATCTAGAAACACCAACACTTTGTCTTGTTGGAGCTCCTAATGTTGGGAAGTCATCTTTGGTTCGTATACTCTCCACAGGGAAGCCTGAGGAGTGGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
MMR_HSR1 NOG1

Protein Analysis

273

Amino Acids

30.38

Weight (kDa)

9.58

Isoelectric Point (pI)

43.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NOG1_N PF17835 83 - 241 7.5e-49 NOG1 N-terminal helical domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 787
AfaI GTAC 2 cut(s) 83, 135
AfiI CCNNNNNNNGG 2 cut(s) 329, 764
AgsI TTSAA 2 cut(s) 233, 479
AjnI CCWGG 1 cut(s) 109
AjuI GAANNNNNNNTTGG 2 cut(s) 761, 793
AloI GAACNNNNNNTCC 2 cut(s) 156, 188
AluBI AGCT 3 cut(s) 168, 256, 755
AluI AGCT 3 cut(s) 168, 256, 755
Alw21I GWGCWC 1 cut(s) 757
Alw26I GTCTC 3 cut(s) 23, 602, 638
Ama87I CYCGRG 1 cut(s) 488
AoxI GGCC 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 2 cut(s) 61, 446
AvaI CYCGRG 1 cut(s) 488
AxyI CCTNAGG 1 cut(s) 807
BanII GRGCYC 1 cut(s) 757
Bbv12I GWGCWC 1 cut(s) 757
BccI CCATC 2 cut(s) 280, 488
BceAI ACGGC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 111
BcoDI GTCTC 3 cut(s) 23, 602, 638
BfaI CTAG 2 cut(s) 93, 725
Bme1390I CCNGG 1 cut(s) 111
BmeT110I CYCGRG 1 cut(s) 488
BmgT120I GGNCC 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 111
BmsI GCATC 3 cut(s) 373, 517, 578
BpmI CTGGAG 2 cut(s) 27, 204
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 764
Bse118I RCCGGY 1 cut(s) 712
Bse21I CCTNAGG 1 cut(s) 807
Bse3DI GCAATG 3 cut(s) 333, 698, 714
BseBI CCWGG 1 cut(s) 111
BseGI GGATG 3 cut(s) 272, 499, 532
BseLI CCNNNNNNNGG 2 cut(s) 329, 764
BseMI GCAATG 3 cut(s) 333, 698, 714
BseMII CTCAG 4 cut(s) 198, 417, 524, 798
BseRI GAGGAG 1 cut(s) 656
BshFI GGCC 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 757
BsiHKCI CYCGRG 1 cut(s) 488
BsiSI CCGG 1 cut(s) 713
BslI CCNNNNNNNGG 2 cut(s) 329, 764
BsmAI GTCTC 3 cut(s) 23, 602, 638
BsnI GGCC 1 cut(s) 79
BsoBI CYCGRG 1 cut(s) 488
Bsp1286I GDGCHC 1 cut(s) 757
Bsp1407I TGTACA 1 cut(s) 133
Bsp143I GATC 3 cut(s) 467, 721, 816
BspANI GGCC 1 cut(s) 79
BspCNI CTCAG 4 cut(s) 199, 418, 525, 799
BsrDI GCAATG 3 cut(s) 333, 698, 714
BsrFI RCCGGY 1 cut(s) 712
BsrGI TGTACA 1 cut(s) 133
BssAI RCCGGY 1 cut(s) 712
BssMI GATC 3 cut(s) 467, 721, 816
BssNAI GTATAC 1 cut(s) 788
Bst1107I GTATAC 1 cut(s) 788
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 2 cut(s) 30, 38
Bst6I CTCTTC 1 cut(s) 26
BstAPI GCANNNNNTGC 1 cut(s) 12
BstAUI TGTACA 1 cut(s) 133
BstC8I GCNNGC 2 cut(s) 13, 705
BstDEI CTNAG 7 cut(s) 207, 299, 309, 426, 533, 582, 807
BstF5I GGATG 3 cut(s) 272, 499, 532
BstKTI GATC 3 cut(s) 470, 724, 819
BstMAI GTCTC 3 cut(s) 23, 602, 638
BstMBI GATC 3 cut(s) 467, 721, 816
BstMWI GCNNNNNNNGC 3 cut(s) 12, 344, 709
BstNI CCWGG 1 cut(s) 111
BstNSI RCATGY 1 cut(s) 569
BstSCI CCNGG 1 cut(s) 109
BstX2I RGATCY 1 cut(s) 816
BstYI RGATCY 1 cut(s) 816
BstZ17I GTATAC 1 cut(s) 788
Bsu36I CCTNAGG 1 cut(s) 807
BsuRI GGCC 1 cut(s) 79
BtsCI GGATG 3 cut(s) 272, 499, 532
Cac8I GCNNGC 2 cut(s) 13, 705
Cfr10I RCCGGY 1 cut(s) 712
Cfr13I GGNCC 1 cut(s) 77
Csp6I GTAC 2 cut(s) 82, 134
CviAII CATG 1 cut(s) 566
CviJI RGCY 8 cut(s) 11, 79, 168, 256, 308, 692, 755, 805
CviKI_1 RGCY 8 cut(s) 11, 79, 168, 256, 308, 692, 755, 805
CviQI GTAC 2 cut(s) 82, 134
DdeI CTNAG 7 cut(s) 207, 299, 309, 426, 533, 582, 807
DpnI GATC 3 cut(s) 469, 723, 818
DpnII GATC 3 cut(s) 467, 721, 816
DraI TTTAAA 1 cut(s) 630
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Ecl136II GAGCTC 1 cut(s) 755
Eco24I GRGCYC 1 cut(s) 757
Eco53kI GAGCTC 1 cut(s) 755
Eco81I CCTNAGG 1 cut(s) 807
Eco88I CYCGRG 1 cut(s) 488
EcoICRI GAGCTC 1 cut(s) 755
EcoRII CCWGG 1 cut(s) 109
EcoT22I ATGCAT 2 cut(s) 388, 571
EcoT38I GRGCYC 1 cut(s) 757
FaeI CATG 1 cut(s) 569
FatI CATG 1 cut(s) 565
FblI GTMKAC 1 cut(s) 787
FokI GGATG 3 cut(s) 259, 506, 539
FriOI GRGCYC 1 cut(s) 757
FspBI CTAG 2 cut(s) 93, 725
GsuI CTGGAG 2 cut(s) 27, 204
HaeIII GGCC 1 cut(s) 79
HapII CCGG 1 cut(s) 713
Hin1II CATG 1 cut(s) 569
HincII GTYRAC 2 cut(s) 280, 588
HindII GTYRAC 2 cut(s) 280, 588
HpaII CCGG 1 cut(s) 713
HphI GGTGA 2 cut(s) 61, 446
Hpy166II GTNNAC 4 cut(s) 134, 280, 588, 788
Hpy188I TCNGA 3 cut(s) 252, 427, 534
Hpy188III TCNNGA 3 cut(s) 44, 221, 725
Hpy8I GTNNAC 4 cut(s) 134, 280, 588, 788
HpyAV CCTTC 3 cut(s) 227, 298, 592
HpyCH4III ACNGT 2 cut(s) 30, 38
HpyCH4IV ACGT 1 cut(s) 590
HpyCH4V TGCA 7 cut(s) 15, 245, 320, 347, 371, 386, 569
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 344, 709
HpyF3I CTNAG 7 cut(s) 207, 299, 309, 426, 533, 582, 807
HpySE526I ACGT 1 cut(s) 590
Hsp92II CATG 1 cut(s) 569
Kzo9I GATC 3 cut(s) 467, 721, 816
LmnI GCTCC 2 cut(s) 752, 760
LweI GCATC 3 cut(s) 373, 517, 578
MaeI CTAG 2 cut(s) 93, 725
MaeII ACGT 1 cut(s) 590
MaeIII GTNAC 1 cut(s) 681
MalI GATC 3 cut(s) 469, 723, 818
MboI GATC 3 cut(s) 467, 721, 816
MboII GAAGA 2 cut(s) 13, 443
MflI RGATCY 1 cut(s) 816
MhlI GDGCHC 1 cut(s) 757
MluCI AATT 3 cut(s) 315, 479, 499
MmeI TCCRAC 3 cut(s) 49, 535, 730
MnlI CCTC 8 cut(s) 51, 190, 202, 359, 528, 616, 634, 802
Mph1103I ATGCAT 2 cut(s) 388, 571
MseI TTAA 4 cut(s) 189, 413, 482, 629
MslI CAYNNNNRTG 2 cut(s) 459, 574
MspI CCGG 1 cut(s) 713
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
MwoI GCNNNNNNNGC 3 cut(s) 12, 344, 709
NdeII GATC 3 cut(s) 467, 721, 816
NlaIII CATG 1 cut(s) 569
NsiI ATGCAT 2 cut(s) 388, 571
NspI RCATGY 1 cut(s) 569
Psp124BI GAGCTC 1 cut(s) 757
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspPI GGNCC 1 cut(s) 77
PsuI RGATCY 1 cut(s) 816
RsaI GTAC 2 cut(s) 83, 135
RsaNI GTAC 2 cut(s) 82, 134
RseI CAYNNNNRTG 2 cut(s) 459, 574
SacI GAGCTC 1 cut(s) 757
SaqAI TTAA 4 cut(s) 189, 413, 482, 629
Sau3AI GATC 3 cut(s) 467, 721, 816
Sau96I GGNCC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 111
SduI GDGCHC 1 cut(s) 757
SfaNI GCATC 3 cut(s) 373, 517, 578
SmiMI CAYNNNNRTG 2 cut(s) 459, 574
Sse9I AATT 3 cut(s) 315, 479, 499
SspI AATATT 1 cut(s) 343
SspMI CTAG 2 cut(s) 93, 725
SstI GAGCTC 1 cut(s) 757
StyD4I CCNGG 1 cut(s) 109
TaaI ACNGT 2 cut(s) 30, 38
TaiI ACGT 1 cut(s) 593
TasI AATT 3 cut(s) 315, 479, 499
TatI WGTACW 1 cut(s) 133
Tru1I TTAA 4 cut(s) 189, 413, 482, 629
Tru9I TTAA 4 cut(s) 189, 413, 482, 629
TspDTI ATGAA 2 cut(s) 407, 519
TspGWI ACGGA 1 cut(s) 265
XbaI TCTAGA 1 cut(s) 724
XceI RCATGY 1 cut(s) 569
XmiI GTMKAC 1 cut(s) 787
XspI CTAG 2 cut(s) 93, 725
Zsp2I ATGCAT 2 cut(s) 388, 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.