Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005154

Physical Location & Seq

Genomic Coordinates Forward (+)

35528145 .. 35536376

Gene Structure 8232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG185700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGAGCAGGGCTTGCAGTCTCTTCCAACTATGGCACAGTCCTCCAGACGCCAGATTACTACTCTCAATCACCAAAGGGCCGTACTTGATACCTAGTGCCAGAAGTTATCCAGGTCTGTGCTTCTGTAAGGGTTTACAGACTTCTACATACCAAGTTGTCAGGGGAAGCTATGTACCCACCTCCCAGATTAAACAAGAAAGTAAAACTGAGGAAAAATCTCCAGAAAAACTTGAAGGTGTTGGTGCATTTCAGAAGCTACCAATGGTAATGCCATCTGTTGACATTCTTTATTCAGCACTAAGGAAGGCTAAGAAAATTGCACCAACAAAAGGCATTGCAAATATTGCAAAGAGAGAAAGAAATAGAGGTGCAAAGCAACTTGATGCATTGATGAAAGAAATAGCAGTTCCTTTAAGGACTTATTCGGAGAACTTTCCCAATAAGAAGTATCTTCACCCTTATGAGCGATCTCTTATTGAATTAACTCTCGGGGATGGAAATTATGAACAGGTATTGGGAAAGGTGGATGCTCTGAGGAAAAAGGTTGTGTCTGTTGGAAAGGAACATGCATCTCTATGTGCTAAGTCAACGTCGAAGAAGGAAGCAGAGACAAGACTGAGTGAGGGTTTAAAGAAAGTTGAGGAGACATATATTCGTCAAGGAAAATATGTTGATGATTTGTTACACATAGCCAAGACATTGCGAGCAATGCCGGTAGTTGATCTAGAAACACCAACACTTTGTCTTGTTGGAGCTCCTAATGTTGGGAAGTCATCTTTGGTTCGTATACTCTCCACAGGGAAGCCTGAGGTCTGCAACTACCCTTTCACAACAAGAGGAATACTAATGGGTCATATCATTTTAAACCATGAGACTTTTCAGGTCAGTCAGTCTCTAATTTTTGCAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

MMR_HSR1 NOG1

Protein Analysis

303

Amino Acids

33.66

Weight (kDa)

9.58

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NOG1_N	PF17835	83 - 241	9.9e-49	NOG1 N-terminal helical domain
MMR_HSR1	PF01926	247 - 293	4.9e-09	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80770 AT1G80770 AT1G80770 AT1G80770 AT1G80770 AT1G80770
fragaria_vesca	FvH4_7g08680 FvH4_7g08680
malus_domestica	MD02G1225900.v1.1 MD07G1087900.v1.1
prunus_persica	Prupe.2G114600_v2.0.a1
pyrus_communis	pycom02g19460 pycom07g07050
rosa_chinensis	RchiOBHm_Chr1g0343911
rosa_laevigata	RLG00000028949
rosa_multiflora	Rmu_sc0007032.1_g000002 Rmu_sc0007696.1_g000024
rosa_roxburghii	Rroxscaffold_4G00310300
rosa_rugosa	Rorug01G0169100 Rorug01G0169200 Rorug01G0169300
rosa_samantha	Rh1AG185700 Rh1BG125600 Rh1BG152500 Rh1CG171500 Rh1DG184500 Rh6BG211600 Rh6BG212200
rosa_wichuraiana	Rw1G015320 Rw1G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	787
AcyI	GRCGYC	1 cut(s)	48
AfaI	GTAC	2 cut(s)	83, 174
AfiI	CCNNNNNNNGG	2 cut(s)	329, 764
AgsI	TTSAA	2 cut(s)	233, 479
AjnI	CCWGG	1 cut(s)	109
AjuI	GAANNNNNNNTTGG	2 cut(s)	761, 793
AluBI	AGCT	3 cut(s)	168, 256, 755
AluI	AGCT	3 cut(s)	168, 256, 755
Alw21I	GWGCWC	1 cut(s)	757
Alw26I	GTCTC	5 cut(s)	23, 602, 638, 866, 897
Ama87I	CYCGRG	1 cut(s)	488
AoxI	GGCC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	77
AsuHPI	GGTGA	2 cut(s)	61, 446
AvaI	CYCGRG	1 cut(s)	488
AxyI	CCTNAGG	1 cut(s)	807
BanII	GRGCYC	1 cut(s)	757
Bbv12I	GWGCWC	1 cut(s)	757
BccI	CCATC	2 cut(s)	280, 488
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	111
BcoDI	GTCTC	5 cut(s)	23, 602, 638, 866, 897
BfaI	CTAG	2 cut(s)	93, 725
Bme1390I	CCNGG	1 cut(s)	111
BmeT110I	CYCGRG	1 cut(s)	488
BmgT120I	GGNCC	1 cut(s)	77
BmrFI	CCNGG	1 cut(s)	111
BmsI	GCATC	3 cut(s)	373, 517, 578
BpmI	CTGGAG	2 cut(s)	27, 204
BsaHI	GRCGYC	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 764
Bse118I	RCCGGY	1 cut(s)	712
Bse21I	CCTNAGG	1 cut(s)	807
Bse3DI	GCAATG	3 cut(s)	333, 698, 714
BseBI	CCWGG	1 cut(s)	111
BseGI	GGATG	2 cut(s)	499, 532
BseLI	CCNNNNNNNGG	2 cut(s)	329, 764
BseMI	GCAATG	3 cut(s)	333, 698, 714
BseMII	CTCAG	4 cut(s)	198, 524, 608, 798
BseRI	GAGGAG	1 cut(s)	656
BshFI	GGCC	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	757
BsiHKCI	CYCGRG	1 cut(s)	488
BsiSI	CCGG	1 cut(s)	713
BslI	CCNNNNNNNGG	2 cut(s)	329, 764
BsmAI	GTCTC	5 cut(s)	23, 602, 638, 866, 897
BsnI	GGCC	1 cut(s)	79
BsoBI	CYCGRG	1 cut(s)	488
Bsp1286I	GDGCHC	1 cut(s)	757
Bsp143I	GATC	2 cut(s)	467, 721
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	4 cut(s)	199, 525, 609, 799
BsrDI	GCAATG	3 cut(s)	333, 698, 714
BsrFI	RCCGGY	1 cut(s)	712
BssAI	RCCGGY	1 cut(s)	712
BssMI	GATC	2 cut(s)	467, 721
BssNAI	GTATAC	1 cut(s)	788
BssNI	GRCGYC	1 cut(s)	48
Bst1107I	GTATAC	1 cut(s)	788
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	38
Bst6I	CTCTTC	1 cut(s)	26
BstACI	GRCGYC	1 cut(s)	48
BstAPI	GCANNNNNTGC	2 cut(s)	12, 344
BstC8I	GCNNGC	2 cut(s)	13, 705
BstDEI	CTNAG	7 cut(s)	207, 299, 309, 533, 582, 617, 807
BstF5I	GGATG	2 cut(s)	499, 532
BstKTI	GATC	2 cut(s)	470, 724
BstMAI	GTCTC	5 cut(s)	23, 602, 638, 866, 897
BstMBI	GATC	2 cut(s)	467, 721
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 344, 709
BstNI	CCWGG	1 cut(s)	111
BstNSI	RCATGY	1 cut(s)	569
BstSCI	CCNGG	1 cut(s)	109
BstZ17I	GTATAC	1 cut(s)	788
Bsu36I	CCTNAGG	1 cut(s)	807
BsuRI	GGCC	1 cut(s)	79
BtsCI	GGATG	2 cut(s)	499, 532
Cac8I	GCNNGC	2 cut(s)	13, 705
Cfr10I	RCCGGY	1 cut(s)	712
Cfr13I	GGNCC	1 cut(s)	77
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	2 cut(s)	82, 173
CviAII	CATG	2 cut(s)	566, 869
CviJI	RGCY	8 cut(s)	11, 79, 168, 256, 308, 692, 755, 805
CviKI_1	RGCY	8 cut(s)	11, 79, 168, 256, 308, 692, 755, 805
CviQI	GTAC	2 cut(s)	82, 173
DdeI	CTNAG	7 cut(s)	207, 299, 309, 533, 582, 617, 807
DpnI	GATC	2 cut(s)	469, 723
DpnII	GATC	2 cut(s)	467, 721
DraI	TTTAAA	2 cut(s)	630, 864
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Ecl136II	GAGCTC	1 cut(s)	755
Eco24I	GRGCYC	1 cut(s)	757
Eco53kI	GAGCTC	1 cut(s)	755
Eco81I	CCTNAGG	1 cut(s)	807
Eco88I	CYCGRG	1 cut(s)	488
EcoICRI	GAGCTC	1 cut(s)	755
EcoRII	CCWGG	1 cut(s)	109
EcoT22I	ATGCAT	2 cut(s)	388, 571
EcoT38I	GRGCYC	1 cut(s)	757
FaeI	CATG	2 cut(s)	569, 872
FatI	CATG	2 cut(s)	565, 868
FblI	GTMKAC	1 cut(s)	787
FokI	GGATG	2 cut(s)	506, 539
FriOI	GRGCYC	1 cut(s)	757
FspBI	CTAG	2 cut(s)	93, 725
GsuI	CTGGAG	2 cut(s)	27, 204
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	1 cut(s)	713
HgaI	GACGC	1 cut(s)	56
Hin1I	GRCGYC	1 cut(s)	48
Hin1II	CATG	2 cut(s)	569, 872
HincII	GTYRAC	2 cut(s)	280, 588
HindII	GTYRAC	2 cut(s)	280, 588
HpaII	CCGG	1 cut(s)	713
HphI	GGTGA	2 cut(s)	61, 446
Hpy166II	GTNNAC	4 cut(s)	134, 280, 588, 788
Hpy188I	TCNGA	3 cut(s)	252, 427, 534
Hpy188III	TCNNGA	3 cut(s)	44, 221, 725
Hpy8I	GTNNAC	4 cut(s)	134, 280, 588, 788
Hpy99I	CGWCG	1 cut(s)	595
HpyAV	CCTTC	3 cut(s)	227, 298, 592
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4IV	ACGT	1 cut(s)	590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 344, 709
HpyF3I	CTNAG	7 cut(s)	207, 299, 309, 533, 582, 617, 807
HpySE526I	ACGT	1 cut(s)	590
Hsp92I	GRCGYC	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	569, 872
Kzo9I	GATC	2 cut(s)	467, 721
LmnI	GCTCC	2 cut(s)	752, 760
LweI	GCATC	3 cut(s)	373, 517, 578
MaeI	CTAG	2 cut(s)	93, 725
MaeII	ACGT	1 cut(s)	590
MaeIII	GTNAC	1 cut(s)	681
MalI	GATC	2 cut(s)	469, 723
MboI	GATC	2 cut(s)	467, 721
MboII	GAAGA	3 cut(s)	13, 443, 607
MhlI	GDGCHC	1 cut(s)	757
MluCI	AATT	4 cut(s)	315, 479, 499, 897
MmeI	TCCRAC	3 cut(s)	49, 535, 730
MnlI	CCTC	9 cut(s)	51, 190, 202, 359, 528, 616, 634, 802, 830
Mph1103I	ATGCAT	2 cut(s)	388, 571
MseI	TTAA	5 cut(s)	189, 413, 482, 629, 863
MslI	CAYNNNNRTG	2 cut(s)	459, 574
MspI	CCGG	1 cut(s)	713
MspR9I	CCNGG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	12, 344, 709
NdeII	GATC	2 cut(s)	467, 721
NlaIII	CATG	2 cut(s)	569, 872
NsiI	ATGCAT	2 cut(s)	388, 571
NspI	RCATGY	1 cut(s)	569
Psp124BI	GAGCTC	1 cut(s)	757
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspPI	GGNCC	1 cut(s)	77
RsaI	GTAC	2 cut(s)	83, 174
RsaNI	GTAC	2 cut(s)	82, 173
RseI	CAYNNNNRTG	2 cut(s)	459, 574
SacI	GAGCTC	1 cut(s)	757
SaqAI	TTAA	5 cut(s)	189, 413, 482, 629, 863
Sau3AI	GATC	2 cut(s)	467, 721
Sau96I	GGNCC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	111
SduI	GDGCHC	1 cut(s)	757
SfaNI	GCATC	3 cut(s)	373, 517, 578
SmiMI	CAYNNNNRTG	2 cut(s)	459, 574
Sse9I	AATT	4 cut(s)	315, 479, 499, 897
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	2 cut(s)	93, 725
SstI	GAGCTC	1 cut(s)	757
StyD4I	CCNGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	38
TaiI	ACGT	1 cut(s)	593
TaqI	TCGA	1 cut(s)	593
TasI	AATT	4 cut(s)	315, 479, 499, 897
Tru1I	TTAA	5 cut(s)	189, 413, 482, 629, 863
Tru9I	TTAA	5 cut(s)	189, 413, 482, 629, 863
TspDTI	ATGAA	2 cut(s)	407, 519
XbaI	TCTAGA	1 cut(s)	724
XceI	RCATGY	1 cut(s)	569
XmiI	GTMKAC	1 cut(s)	787
XspI	CTAG	2 cut(s)	93, 725
Zsp2I	ATGCAT	2 cut(s)	388, 571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.