Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005154

Physical Location & Seq

Genomic Coordinates Reverse (-)

17314297 .. 17321178

Gene Structure 6882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g19460.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGAGCAGGGCTTGCAGTCTCTTCCAATTGTGGCAGACCCCTAACAGTTTACCACTCACACTCTCCAAACTTTCAAAAGGTCCGCACTTGATACCGAGTGCCAGAAATTATCCGGTTCTGTGCTTCTGCAAGGAAATACAAACTAGCACATACGAAGTTGTCAAGGGAAGCTATGTACCGTCAGCCGTTGTAAAACCGGAAAGCAGGCCGAAGGAAAAATCACCCGAAAATCTTGAAGATGTTGGTGCATTCCAAAAGCTACCCATGGTGATGCCATCTGTTGACATTCTGTATTCGGCACTAAGGAAGGCTAAGAGGATTACACCAACAAAGGGTATTGCCAATATTGCAAAGCGAGAAAGAAATAGAGGTGCAAAGCAACTTGATGCATTGATGAAAGAACTGGCAATTCCATTGAGAACTTATTCGGAGAATTTTCCAAATAAAAAGTGTCTTCATCCTTATGAACGGTCTCTTATTGAATTAACTCTTGGGGATGGAAATTATGAACAGGTGTTGGGAAAGGTGGATGCTTTGAGGAAGAAGGTTGTGTCTATTGGAAAGGAACATGCATCTCTTTGTGCTAAGTCAACGACGAAGAAGGAAGCAGAGGCAAGACTAACTGAGGGTATAAAGAAAGTTGAAGAGACATTTAATCGTGAAGGAAAACATGTTGATGATTTGTTACACATAGCCAAGACTCTGCGAGCAATGCCAGTAGTTGATCTAGAAGCACCAACACTTTGTCTTGTTGGAGCTCCTAACGTTGGGAAGTCATCTTTGGTTCGTATACTCTCCACTGGGAAGCCTGAGGTCTGCAACTACCCGTTCACAACAAGGGGAATACTGATGGGTCATATTATATCAAACCGTCAAACTTTTCAGGTGACAGACACTCCTGGCCTGCTGAAGAGATGTGATGAGGACAGAAATAATTTGGAAAAATTGACACTTGCTGTCCTCTCAAATTTACCAACCGCAATTCTCTATGTCCATGACCTCTCTGGGGAATGCGGGACCTCACCTTCTGACCAGTTTGTCATATACAAAGAAATAAAGGAGAGGTTTGGTGAGCATTTGTGGCTTGATGTTGTGTCCAAATGTGATCTGTTGCAAAAGTCTCCTGTGCTATTTGCCACTGATAATGGTTATGATTCTGATCTTAAGCTGGAAAGGTACCGGAAATTGGGTCCTGATGGAGCTATTCATGTGTCAGTGACGAATGAAGTAGGGCTCACCGAGTTGAAGATTAGAGTGCATGAGATGCTAGATTCACAGATGACGAGGATCCAAGTTCAAGAAAGCAACCAAGAAAAGCTTGAAGTTGGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

MMR_HSR1 NOG1

Protein Analysis

445

Amino Acids

49.59

Weight (kDa)

8.89

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80770 AT1G80770 AT1G80770 AT1G80770 AT1G80770 AT1G80770
fragaria_vesca	FvH4_7g08680 FvH4_7g08680
malus_domestica	MD02G1225900.v1.1 MD07G1087900.v1.1
prunus_persica	Prupe.2G114600_v2.0.a1
pyrus_communis	pycom02g19460 pycom07g07050
rosa_chinensis	RchiOBHm_Chr1g0343911
rosa_laevigata	RLG00000028949
rosa_multiflora	Rmu_sc0007032.1_g000002 Rmu_sc0007696.1_g000024
rosa_roxburghii	Rroxscaffold_4G00310300
rosa_rugosa	Rorug01G0169100 Rorug01G0169200 Rorug01G0169300
rosa_samantha	Rh1AG185700 Rh1BG125600 Rh1BG152500 Rh1CG171500 Rh1DG184500 Rh6BG211600 Rh6BG212200
rosa_wichuraiana	Rw1G015320 Rw1G015360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1037
Acc65I	GGTACC	1 cut(s)	1176
AccB1I	GGYRCC	1 cut(s)	1176
AccI	GTMKAC	1 cut(s)	790
AciI	CCGC	3 cut(s)	83, 978, 1014
AclI	AACGTT	1 cut(s)	765
AclWI	GGATC	2 cut(s)	1282, 1295
AcsI	RAATTY	2 cut(s)	433, 967
AcuI	CTGAAG	1 cut(s)	929
AfaI	GTAC	3 cut(s)	177, 1178, 1330
AfiI	CCNNNNNNNGG	4 cut(s)	332, 767, 1006, 1186
AflII	CTTAAG	1 cut(s)	1163
AflIII	ACRYGT	1 cut(s)	670
AgsI	TTSAA	7 cut(s)	75, 236, 482, 644, 1246, 1298, 1322
AjnI	CCWGG	1 cut(s)	898
AjuI	GAANNNNNNNTTGG	4 cut(s)	474, 506, 764, 796
AluBI	AGCT	6 cut(s)	171, 259, 758, 1168, 1202, 1318
AluI	AGCT	6 cut(s)	171, 259, 758, 1168, 1202, 1318
Alw21I	GWGCWC	1 cut(s)	760
Alw26I	GTCTC	4 cut(s)	23, 477, 641, 1125
AlwI	GGATC	2 cut(s)	1282, 1295
AoxI	GGCC	2 cut(s)	206, 901
ApoI	RAATTY	2 cut(s)	433, 967
Asp700I	GAANNNNTTC	1 cut(s)	424
Asp718I	GGTACC	1 cut(s)	1176
AspS9I	GGNCC	3 cut(s)	80, 1017, 1190
AsuHPI	GGTGA	6 cut(s)	213, 280, 898, 1014, 1082, 1228
AvaII	GGWCC	3 cut(s)	80, 1017, 1190
AxyI	CCTNAGG	1 cut(s)	810
BamHI	GGATCC	1 cut(s)	1287
BanI	GGYRCC	1 cut(s)	1176
BanII	GRGCYC	2 cut(s)	760, 1236
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	760
BccI	CCATC	4 cut(s)	283, 491, 844, 1190
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	900
BcoDI	GTCTC	4 cut(s)	23, 477, 641, 1125
BfaI	CTAG	3 cut(s)	144, 728, 1268
BfrI	CTTAAG	1 cut(s)	1163
Bme1390I	CCNGG	1 cut(s)	900
Bme18I	GGWCC	3 cut(s)	80, 1017, 1190
BmgT120I	GGNCC	3 cut(s)	80, 1017, 1190
BmiI	GGNNCC	4 cut(s)	1018, 1178, 1191, 1289
BmrFI	CCNGG	1 cut(s)	900
BmrI	ACTGGG	1 cut(s)	810
BmsI	GCATC	5 cut(s)	261, 376, 520, 581, 1254
BmuI	ACTGGG	1 cut(s)	810
BpiI	GAAGAC	1 cut(s)	446
BsaBI	GATNNNNATC	1 cut(s)	1158
BsaI	GGTCTC	1 cut(s)	477
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	3 cut(s)	112, 196, 1179
BsaXI	ACNNNNNCTCC	2 cut(s)	880, 910
Bsc4I	CCNNNNNNNGG	4 cut(s)	332, 767, 1006, 1186
Bse1I	ACTGG	4 cut(s)	408, 716, 805, 1033
Bse21I	CCTNAGG	1 cut(s)	810
Bse3DI	GCAATG	1 cut(s)	717
Bse8I	GATNNNNATC	1 cut(s)	1158
BseBI	CCWGG	1 cut(s)	900
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	3 cut(s)	457, 502, 535
BseJI	GATNNNNATC	1 cut(s)	1158
BseLI	CCNNNNNNNGG	4 cut(s)	332, 767, 1006, 1186
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	2 cut(s)	615, 801
BseNI	ACTGG	4 cut(s)	408, 716, 805, 1033
BshFI	GGCC	2 cut(s)	208, 903
BshNI	GGYRCC	1 cut(s)	1176
BsiHKAI	GWGCWC	1 cut(s)	760
BsiSI	CCGG	3 cut(s)	113, 197, 1180
BslFI	GGGAC	1 cut(s)	1030
BslI	CCNNNNNNNGG	4 cut(s)	332, 767, 1006, 1186
BsmAI	GTCTC	4 cut(s)	23, 477, 641, 1125
BsmFI	GGGAC	1 cut(s)	1030
BsmI	GAATGC	2 cut(s)	248, 1016
BsnI	GGCC	2 cut(s)	208, 903
Bso31I	GGTCTC	1 cut(s)	477
Bsp1286I	GDGCHC	2 cut(s)	760, 1236
Bsp143I	GATC	4 cut(s)	724, 1105, 1159, 1287
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	3 cut(s)	83, 978, 1014
BspANI	GGCC	2 cut(s)	208, 903
BspCNI	CTCAG	2 cut(s)	616, 802
BspLI	GGNNCC	4 cut(s)	1018, 1178, 1191, 1289
BspPI	GGATC	2 cut(s)	1282, 1295
BspT107I	GGYRCC	1 cut(s)	1176
BspTI	CTTAAG	1 cut(s)	1163
BspTNI	GGTCTC	1 cut(s)	477
BsrDI	GCAATG	1 cut(s)	717
BsrI	ACTGG	4 cut(s)	408, 716, 805, 1033
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	4 cut(s)	724, 1105, 1159, 1287
BssNAI	GTATAC	1 cut(s)	791
BssT1I	CCWWGG	1 cut(s)	264
Bst1107I	GTATAC	1 cut(s)	791
Bst2UI	CCWGG	1 cut(s)	900
Bst4CI	ACNGT	4 cut(s)	47, 180, 471, 872
Bst6I	CTCTTC	3 cut(s)	26, 639, 905
BstAFI	CTTAAG	1 cut(s)	1163
BstAPI	GCANNNNNTGC	2 cut(s)	12, 1264
BstC8I	GCNNGC	4 cut(s)	13, 206, 708, 905
BstDEI	CTNAG	5 cut(s)	302, 312, 585, 624, 810
BstDSI	CCRYGG	1 cut(s)	264
BstF5I	GGATG	3 cut(s)	457, 502, 535
BstKTI	GATC	4 cut(s)	727, 1108, 1162, 1290
BstMAI	GTCTC	4 cut(s)	23, 477, 641, 1125
BstMBI	GATC	4 cut(s)	724, 1105, 1159, 1287
BstMWI	GCNNNNNNNGC	5 cut(s)	12, 347, 712, 1081, 1264
BstNI	CCWGG	1 cut(s)	900
BstNSI	RCATGY	2 cut(s)	572, 674
BstSCI	CCNGG	1 cut(s)	898
BstV2I	GAAGAC	1 cut(s)	446
BstX2I	RGATCY	1 cut(s)	1287
BstYI	RGATCY	1 cut(s)	1287
BstZ17I	GTATAC	1 cut(s)	791
Bsu36I	CCTNAGG	1 cut(s)	810
BsuRI	GGCC	2 cut(s)	208, 903
BtgI	CCRYGG	1 cut(s)	264
BtsCI	GGATG	3 cut(s)	457, 502, 535
BtsIMutI	CAGTG	3 cut(s)	798, 1137, 1221
Cac8I	GCNNGC	4 cut(s)	13, 206, 708, 905
Cfr13I	GGNCC	3 cut(s)	80, 1017, 1190
Csp6I	GTAC	3 cut(s)	176, 1177, 1329
CviAII	CATG	6 cut(s)	265, 569, 671, 995, 1208, 1259
CviQI	GTAC	3 cut(s)	176, 1177, 1329
DdeI	CTNAG	5 cut(s)	302, 312, 585, 624, 810
DpnI	GATC	4 cut(s)	726, 1107, 1161, 1289
DpnII	GATC	4 cut(s)	724, 1105, 1159, 1287
DrdI	GACNNNNNNGTC	1 cut(s)	1037
DseDI	GACNNNNNNGTC	1 cut(s)	1037
Eam1104I	CTCTTC	3 cut(s)	26, 639, 905
EarI	CTCTTC	3 cut(s)	26, 639, 905
Ecl136II	GAGCTC	1 cut(s)	758
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	2 cut(s)	760, 1236
Eco31I	GGTCTC	1 cut(s)	477
Eco47I	GGWCC	3 cut(s)	80, 1017, 1190
Eco53kI	GAGCTC	1 cut(s)	758
Eco57I	CTGAAG	1 cut(s)	929
Eco81I	CCTNAGG	1 cut(s)	810
EcoICRI	GAGCTC	1 cut(s)	758
EcoO109I	RGGNCCY	2 cut(s)	1017, 1190
EcoRII	CCWGG	1 cut(s)	898
EcoT14I	CCWWGG	1 cut(s)	264
EcoT22I	ATGCAT	2 cut(s)	391, 574
EcoT38I	GRGCYC	2 cut(s)	760, 1236
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	6 cut(s)	268, 572, 674, 998, 1211, 1262
FalI	AAGNNNNNCTT	2 cut(s)	1302, 1334
FaqI	GGGAC	1 cut(s)	1030
FatI	CATG	6 cut(s)	264, 568, 670, 994, 1207, 1258
FauI	CCCGC	1 cut(s)	1007
FblI	GTMKAC	1 cut(s)	790
FokI	GGATG	3 cut(s)	444, 509, 542
FriOI	GRGCYC	2 cut(s)	760, 1236
FspBI	CTAG	3 cut(s)	144, 728, 1268
HaeIII	GGCC	2 cut(s)	208, 903
HapII	CCGG	3 cut(s)	113, 197, 1180
Hin1II	CATG	6 cut(s)	268, 572, 674, 998, 1211, 1262
HincII	GTYRAC	2 cut(s)	283, 591
HindII	GTYRAC	2 cut(s)	283, 591
HindIII	AAGCTT	1 cut(s)	1316
HinfI	GANTC	3 cut(s)	700, 1154, 1271
HpaII	CCGG	3 cut(s)	113, 197, 1180
HphI	GGTGA	6 cut(s)	213, 280, 898, 1014, 1082, 1228
Hpy166II	GTNNAC	5 cut(s)	50, 283, 591, 791, 831
Hpy188I	TCNGA	3 cut(s)	430, 1030, 1159
Hpy188III	TCNNGA	5 cut(s)	233, 659, 728, 1193, 1298
Hpy8I	GTNNAC	5 cut(s)	50, 283, 591, 791, 831
Hpy99I	CGWCG	1 cut(s)	598
HpyAV	CCTTC	6 cut(s)	205, 301, 538, 595, 656, 1035
HpyCH4III	ACNGT	4 cut(s)	47, 180, 471, 872
HpyCH4IV	ACGT	1 cut(s)	765
HpyF10VI	GCNNNNNNNGC	5 cut(s)	12, 347, 712, 1081, 1264
HpyF3I	CTNAG	5 cut(s)	302, 312, 585, 624, 810
HpySE526I	ACGT	1 cut(s)	765
Hsp92II	CATG	6 cut(s)	268, 572, 674, 998, 1211, 1262
KpnI	GGTACC	1 cut(s)	1180
Kzo9I	GATC	4 cut(s)	724, 1105, 1159, 1287
LmnI	GCTCC	3 cut(s)	755, 763, 1199
LweI	GCATC	5 cut(s)	261, 376, 520, 581, 1254
MaeI	CTAG	3 cut(s)	144, 728, 1268
MaeII	ACGT	1 cut(s)	765
MaeIII	GTNAC	3 cut(s)	684, 886, 1216
MalI	GATC	4 cut(s)	726, 1107, 1161, 1289
MboI	GATC	4 cut(s)	724, 1105, 1159, 1287
MboII	GAAGA	8 cut(s)	13, 248, 446, 553, 610, 656, 922, 1258
MfeI	CAATTG	1 cut(s)	26
MflI	RGATCY	1 cut(s)	1287
MhlI	GDGCHC	2 cut(s)	760, 1236
MlyI	GAGTC	1 cut(s)	694
MmeI	TCCRAC	1 cut(s)	733
Mph1103I	ATGCAT	2 cut(s)	391, 574
MroXI	GAANNNNTTC	1 cut(s)	424
MseI	TTAA	3 cut(s)	485, 654, 1164
MslI	CAYNNNNRTG	3 cut(s)	269, 462, 675
MspCI	CTTAAG	1 cut(s)	1163
MspI	CCGG	3 cut(s)	113, 197, 1180
MspR9I	CCNGG	1 cut(s)	900
MunI	CAATTG	1 cut(s)	26
Mva1269I	GAATGC	2 cut(s)	248, 1016
MvaI	CCWGG	1 cut(s)	900
MwoI	GCNNNNNNNGC	5 cut(s)	12, 347, 712, 1081, 1264
NcoI	CCATGG	1 cut(s)	264
NdeII	GATC	4 cut(s)	724, 1105, 1159, 1287
NlaIII	CATG	6 cut(s)	268, 572, 674, 998, 1211, 1262
NlaIV	GGNNCC	4 cut(s)	1018, 1178, 1191, 1289
NmuCI	GTSAC	2 cut(s)	886, 1216
NsiI	ATGCAT	2 cut(s)	391, 574
NspI	RCATGY	2 cut(s)	572, 674
PciI	ACATGT	1 cut(s)	670
PctI	GAATGC	2 cut(s)	248, 1016
PdmI	GAANNNNTTC	1 cut(s)	424
PfeI	GAWTC	2 cut(s)	1154, 1271
PleI	GAGTC	1 cut(s)	694
PpsI	GAGTC	1 cut(s)	694
PpuMI	RGGWCCY	2 cut(s)	1017, 1190
PscI	ACATGT	1 cut(s)	670
Psp124BI	GAGCTC	1 cut(s)	760
Psp1406I	AACGTT	1 cut(s)	765
Psp5II	RGGWCCY	2 cut(s)	1017, 1190
Psp6I	CCWGG	1 cut(s)	898
PspGI	CCWGG	1 cut(s)	898
PspN4I	GGNNCC	4 cut(s)	1018, 1178, 1191, 1289
PspPI	GGNCC	3 cut(s)	80, 1017, 1190
PspPPI	RGGWCCY	2 cut(s)	1017, 1190
PsuI	RGATCY	1 cut(s)	1287
RsaI	GTAC	3 cut(s)	177, 1178, 1330
RsaNI	GTAC	3 cut(s)	176, 1177, 1329
RseI	CAYNNNNRTG	3 cut(s)	269, 462, 675
SacI	GAGCTC	1 cut(s)	760
SaqAI	TTAA	3 cut(s)	485, 654, 1164
Sau3AI	GATC	4 cut(s)	724, 1105, 1159, 1287
Sau96I	GGNCC	3 cut(s)	80, 1017, 1190
SchI	GAGTC	1 cut(s)	694
ScrFI	CCNGG	1 cut(s)	900
SduI	GDGCHC	2 cut(s)	760, 1236
SfaNI	GCATC	5 cut(s)	261, 376, 520, 581, 1254
SinI	GGWCC	3 cut(s)	80, 1017, 1190
SmiMI	CAYNNNNRTG	3 cut(s)	269, 462, 675
SmlI	CTYRAG	1 cut(s)	1163
SmoI	CTYRAG	1 cut(s)	1163
SsiI	CCGC	3 cut(s)	83, 978, 1014
SspI	AATATT	1 cut(s)	346
SspMI	CTAG	3 cut(s)	144, 728, 1268
SstI	GAGCTC	1 cut(s)	760
StyD4I	CCNGG	1 cut(s)	898
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	4 cut(s)	47, 180, 471, 872
TaiI	ACGT	1 cut(s)	768
TfiI	GAWTC	2 cut(s)	1154, 1271
Tru1I	TTAA	3 cut(s)	485, 654, 1164
Tru9I	TTAA	3 cut(s)	485, 654, 1164
TscAI	CASTG	3 cut(s)	805, 1144, 1221
TseFI	GTSAC	2 cut(s)	886, 1216
Tsp45I	GTSAC	2 cut(s)	886, 1216
TspDTI	ATGAA	6 cut(s)	410, 446, 480, 522, 1196, 1239
TspRI	CASTG	3 cut(s)	805, 1144, 1221
Vha464I	CTTAAG	1 cut(s)	1163
VpaK11BI	GGWCC	3 cut(s)	80, 1017, 1190
XapI	RAATTY	2 cut(s)	433, 967
XbaI	TCTAGA	1 cut(s)	727
XceI	RCATGY	2 cut(s)	572, 674
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1001
XmiI	GTMKAC	1 cut(s)	790
XmnI	GAANNNNTTC	1 cut(s)	424
XspI	CTAG	3 cut(s)	144, 728, 1268
Zsp2I	ATGCAT	2 cut(s)	391, 574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.