Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G02060 |
| fragaria_vesca | FvH4_7g09470 FvH4_7g09470 FvH4_7g09470 FvH4_7g09470 FvH4_7g09470 FvH4_7g09470 FvH4_7g09470 FvH4_7g09470 FvH4_7g09470 |
| malus_domestica | MD02G1218600.v1.1 |
| prunus_persica | Prupe.2G122500_v2.0.a1 |
| pyrus_communis | pycom12652g00050 |
| rosa_chinensis | RchiOBHm_Chr1g0346171 |
| rosa_laevigata | RLG00000028810 |
| rosa_multiflora | Rmu_sc0003809.1_g000024 |
| rosa_roxburghii | Rroxscaffold_4G00308800 |
| rosa_rugosa | Rorug01G0178600 |
| rosa_samantha | Rh1AG197700 Rh1BG162900 Rh1BG163000 Rh1BG163800 Rh1CG182800 Rh1DG193600 Rh1DG193700 Rh1DG194800 |
| rosa_wichuraiana | Rw1G016310 Rw1G016590 Rw1G016620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1383 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 815 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 237, 883 |
| AccI | GTMKAC | 1 cut(s) | 1688 |
| AccII | CGCG | 1 cut(s) | 8 |
| AciI | CCGC | 3 cut(s) | 6, 329, 502 |
| AcoI | YGGCCR | 3 cut(s) | 3, 213, 660 |
| AcsI | RAATTY | 4 cut(s) | 448, 1127, 1338, 2198 |
| AcuI | CTGAAG | 3 cut(s) | 28, 43, 326 |
| AfaI | GTAC | 5 cut(s) | 300, 1147, 1519, 1883, 2060 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 237, 883, 1394 |
| AflIII | ACRYGT | 1 cut(s) | 1142 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 38, 1477 |
| AjnI | CCWGG | 1 cut(s) | 215 |
| Alw21I | GWGCWC | 1 cut(s) | 1670 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2188, 2191 |
| Ama87I | CYCGRG | 1 cut(s) | 1014 |
| AoxI | GGCC | 5 cut(s) | 3, 213, 660, 1428, 1606 |
| ApeKI | GCWGC | 4 cut(s) | 440, 1447, 2185, 2188 |
| ApoI | RAATTY | 4 cut(s) | 448, 1127, 1338, 2198 |
| AseI | ATTAAT | 1 cut(s) | 1791 |
| AspLEI | GCGC | 1 cut(s) | 1075 |
| AspS9I | GGNCC | 1 cut(s) | 499 |
| AsuC2I | CCSGG | 1 cut(s) | 812 |
| AsuHPI | GGTGA | 1 cut(s) | 898 |
| AvaI | CYCGRG | 1 cut(s) | 1014 |
| AvaII | GGWCC | 1 cut(s) | 499 |
| BaeGI | GKGCMC | 1 cut(s) | 1735 |
| BalI | TGGCCA | 2 cut(s) | 215, 662 |
| BanII | GRGCYC | 2 cut(s) | 427, 1670 |
| BbsI | GAAGAC | 3 cut(s) | 34, 249, 614 |
| Bbv12I | GWGCWC | 1 cut(s) | 1670 |
| BbvI | GCAGC | 4 cut(s) | 452, 1459, 2175, 2197 |
| BccI | CCATC | 3 cut(s) | 836, 1349, 1598 |
| BceAI | ACGGC | 1 cut(s) | 216 |
| BciT130I | CCWGG | 1 cut(s) | 217 |
| BciVI | GTATCC | 1 cut(s) | 1603 |
| BclI | TGATCA | 1 cut(s) | 1494 |
| BcnI | CCSGG | 1 cut(s) | 812 |
| BfaI | CTAG | 5 cut(s) | 35, 1082, 1299, 1407, 2126 |
| BfmI | CTRYAG | 1 cut(s) | 1967 |
| BfuI | GTATCC | 1 cut(s) | 1603 |
| BisI | GCNGC | 5 cut(s) | 6, 441, 1448, 2186, 2189 |
| BlsI | GCNGC | 5 cut(s) | 7, 442, 1449, 2187, 2190 |
| Bme1390I | CCNGG | 2 cut(s) | 217, 812 |
| Bme18I | GGWCC | 1 cut(s) | 499 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 38, 1477 |
| BmeT110I | CYCGRG | 1 cut(s) | 1014 |
| BmgT120I | GGNCC | 1 cut(s) | 499 |
| BmiI | GGNNCC | 1 cut(s) | 1236 |
| BmrFI | CCNGG | 2 cut(s) | 217, 812 |
| BmsI | GCATC | 6 cut(s) | 393, 1152, 1542, 1647, 1854, 1984 |
| BpiI | GAAGAC | 3 cut(s) | 34, 249, 614 |
| BpmI | CTGGAG | 1 cut(s) | 1119 |
| Bpu10I | CCTNAGC | 1 cut(s) | 204 |
| BpuEI | CTTGAG | 3 cut(s) | 56, 272, 515 |
| BpuMI | CCSGG | 1 cut(s) | 812 |
| BsaJI | CCNNGG | 3 cut(s) | 294, 756, 1431 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 237, 883, 1394 |
| Bse1I | ACTGG | 3 cut(s) | 1746, 1908, 2073 |
| Bse3DI | GCAATG | 2 cut(s) | 1171, 1183 |
| BseBI | CCWGG | 1 cut(s) | 217 |
| BseDI | CCNNGG | 3 cut(s) | 294, 756, 1431 |
| BseGI | GGATG | 5 cut(s) | 820, 1198, 1357, 1557, 1869 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 237, 883, 1394 |
| BseMI | GCAATG | 2 cut(s) | 1171, 1183 |
| BseMII | CTCAG | 7 cut(s) | 35, 98, 115, 131, 700, 1436, 2145 |
| BseNI | ACTGG | 3 cut(s) | 1746, 1908, 2073 |
| BseRI | GAGGAG | 2 cut(s) | 1016, 1322 |
| BseSI | GKGCMC | 1 cut(s) | 1735 |
| BseXI | GCAGC | 4 cut(s) | 452, 1459, 2175, 2197 |
| BseYI | CCCAGC | 3 cut(s) | 65, 539, 1529 |
| BsgI | GTGCAG | 1 cut(s) | 504 |
| Bsh1236I | CGCG | 1 cut(s) | 8 |
| BshFI | GGCC | 5 cut(s) | 5, 215, 662, 1430, 1608 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1670 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1014 |
| BsiSI | CCGG | 2 cut(s) | 89, 812 |
| BslFI | GGGAC | 1 cut(s) | 48 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 237, 883, 1394 |
| BsmFI | GGGAC | 1 cut(s) | 48 |
| BsmI | GAATGC | 1 cut(s) | 1165 |
| BsnI | GGCC | 5 cut(s) | 5, 215, 662, 1430, 1608 |
| BsoBI | CYCGRG | 1 cut(s) | 1014 |
| Bsp1286I | GDGCHC | 3 cut(s) | 427, 1670, 1735 |
| Bsp143I | GATC | 2 cut(s) | 1494, 2141 |
| Bsp19I | CCATGG | 1 cut(s) | 756 |
| BspACI | CCGC | 3 cut(s) | 6, 329, 502 |
| BspANI | GGCC | 5 cut(s) | 5, 215, 662, 1430, 1608 |
| BspCNI | CTCAG | 7 cut(s) | 34, 97, 114, 130, 699, 1435, 2146 |
| BspFNI | CGCG | 1 cut(s) | 8 |
| BspLI | GGNNCC | 1 cut(s) | 1236 |
| BspMAI | CTGCAG | 1 cut(s) | 1971 |
| BsrDI | GCAATG | 2 cut(s) | 1171, 1183 |
| BsrI | ACTGG | 3 cut(s) | 1746, 1908, 2073 |
| BssECI | CCNNGG | 3 cut(s) | 294, 756, 1431 |
| BssMI | GATC | 2 cut(s) | 1494, 2141 |
| BssT1I | CCWWGG | 1 cut(s) | 756 |
| Bst2UI | CCWGG | 1 cut(s) | 217 |
| Bst4CI | ACNGT | 3 cut(s) | 298, 1259, 2223 |
| Bst6I | CTCTTC | 4 cut(s) | 62, 280, 1453, 1575 |
| BstDSI | CCRYGG | 2 cut(s) | 294, 756 |
| BstF5I | GGATG | 5 cut(s) | 820, 1198, 1357, 1557, 1869 |
| BstFNI | CGCG | 1 cut(s) | 8 |
| BstHHI | GCGC | 1 cut(s) | 1075 |
| BstKTI | GATC | 2 cut(s) | 1497, 2144 |
| BstMBI | GATC | 2 cut(s) | 1494, 2141 |
| BstNI | CCWGG | 1 cut(s) | 217 |
| BstNSI | RCATGY | 2 cut(s) | 1146, 1947 |
| BstSCI | CCNGG | 2 cut(s) | 215, 810 |
| BstSFI | CTRYAG | 1 cut(s) | 1967 |
| BstSLI | GKGCMC | 1 cut(s) | 1735 |
| BstUI | CGCG | 1 cut(s) | 8 |
| BstV1I | GCAGC | 4 cut(s) | 452, 1459, 2175, 2197 |
| BstV2I | GAAGAC | 3 cut(s) | 34, 249, 614 |
| BsuI | GTATCC | 1 cut(s) | 1603 |
| BsuRI | GGCC | 5 cut(s) | 5, 215, 662, 1430, 1608 |
| BtgI | CCRYGG | 2 cut(s) | 294, 756 |
| BtsCI | GGATG | 5 cut(s) | 820, 1198, 1357, 1557, 1869 |
| BtsIMutI | CAGTG | 1 cut(s) | 1264 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2188, 2191 |
| CfoI | GCGC | 1 cut(s) | 1075 |
| Cfr13I | GGNCC | 1 cut(s) | 499 |
| Csp6I | GTAC | 5 cut(s) | 299, 1146, 1518, 1882, 2059 |
| CviAII | CATG | 7 cut(s) | 237, 757, 1143, 1498, 1736, 1829, 1944 |
| CviQI | GTAC | 5 cut(s) | 299, 1146, 1518, 1882, 2059 |
| DpnI | GATC | 2 cut(s) | 1496, 2143 |
| DpnII | GATC | 2 cut(s) | 1494, 2141 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 815 |
| DriI | GACNNNNNGTC | 2 cut(s) | 38, 1477 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 815 |
| EaeI | YGGCCR | 3 cut(s) | 3, 213, 660 |
| Eam1104I | CTCTTC | 4 cut(s) | 62, 280, 1453, 1575 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 38, 1477 |
| EarI | CTCTTC | 4 cut(s) | 62, 280, 1453, 1575 |
| Ecl136II | GAGCTC | 1 cut(s) | 1668 |
| Eco130I | CCWWGG | 1 cut(s) | 756 |
| Eco24I | GRGCYC | 2 cut(s) | 427, 1670 |
| Eco47I | GGWCC | 1 cut(s) | 499 |
| Eco53kI | GAGCTC | 1 cut(s) | 1668 |
| Eco57I | CTGAAG | 3 cut(s) | 28, 43, 326 |
| Eco88I | CYCGRG | 1 cut(s) | 1014 |
| EcoICRI | GAGCTC | 1 cut(s) | 1668 |
| EcoRII | CCWGG | 1 cut(s) | 215 |
| EcoT14I | CCWWGG | 1 cut(s) | 756 |
| EcoT22I | ATGCAT | 1 cut(s) | 1167 |
| EcoT38I | GRGCYC | 2 cut(s) | 427, 1670 |
| ErhI | CCWWGG | 1 cut(s) | 756 |
| FaeI | CATG | 7 cut(s) | 240, 760, 1146, 1501, 1739, 1832, 1947 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 41, 73 |
| FaqI | GGGAC | 1 cut(s) | 48 |
| FatI | CATG | 7 cut(s) | 236, 756, 1142, 1497, 1735, 1828, 1943 |
| FauI | CCCGC | 1 cut(s) | 336 |
| FauNDI | CATATG | 1 cut(s) | 1522 |
| FbaI | TGATCA | 1 cut(s) | 1494 |
| FblI | GTMKAC | 1 cut(s) | 1688 |
| Fnu4HI | GCNGC | 5 cut(s) | 6, 441, 1448, 2186, 2189 |
| FokI | GGATG | 5 cut(s) | 827, 1205, 1364, 1564, 1876 |
| FriOI | GRGCYC | 2 cut(s) | 427, 1670 |
| Fsp4HI | GCNGC | 5 cut(s) | 6, 441, 1448, 2186, 2189 |
| FspBI | CTAG | 5 cut(s) | 35, 1082, 1299, 1407, 2126 |
| GlaI | GCGC | 1 cut(s) | 1074 |
| GluI | GCNGC | 5 cut(s) | 6, 441, 1448, 2186, 2189 |
| GsaI | CCCAGC | 3 cut(s) | 69, 543, 1533 |
| GsuI | CTGGAG | 1 cut(s) | 1119 |
| HaeIII | GGCC | 5 cut(s) | 5, 215, 662, 1430, 1608 |
| HapII | CCGG | 2 cut(s) | 89, 812 |
| HhaI | GCGC | 1 cut(s) | 1075 |
| Hin1II | CATG | 7 cut(s) | 240, 760, 1146, 1501, 1739, 1832, 1947 |
| Hin6I | GCGC | 1 cut(s) | 1073 |
| HinP1I | GCGC | 1 cut(s) | 1073 |
| HincII | GTYRAC | 3 cut(s) | 183, 226, 1283 |
| HindII | GTYRAC | 3 cut(s) | 183, 226, 1283 |
| HindIII | AAGCTT | 2 cut(s) | 563, 1931 |
| HinfI | GANTC | 9 cut(s) | 10, 92, 254, 554, 919, 1244, 1739, 2108, 2173 |
| HpaII | CCGG | 2 cut(s) | 89, 812 |
| HphI | GGTGA | 1 cut(s) | 898 |
| Hpy166II | GTNNAC | 5 cut(s) | 183, 226, 301, 1283, 1689 |
| Hpy188I | TCNGA | 5 cut(s) | 47, 120, 1225, 1425, 2044 |
| Hpy188III | TCNNGA | 3 cut(s) | 400, 1136, 1549 |
| Hpy8I | GTNNAC | 5 cut(s) | 183, 226, 301, 1283, 1689 |
| HpyCH4III | ACNGT | 3 cut(s) | 298, 1259, 2223 |
| HpyCH4IV | ACGT | 2 cut(s) | 1148, 1685 |
| HpySE526I | ACGT | 2 cut(s) | 1148, 1685 |
| Hsp92II | CATG | 7 cut(s) | 240, 760, 1146, 1501, 1739, 1832, 1947 |
| HspAI | GCGC | 1 cut(s) | 1073 |
| Ksp22I | TGATCA | 1 cut(s) | 1494 |
| Kzo9I | GATC | 2 cut(s) | 1494, 2141 |
| Lsp1109I | GCAGC | 4 cut(s) | 452, 1459, 2175, 2197 |
| LweI | GCATC | 6 cut(s) | 393, 1152, 1542, 1647, 1854, 1984 |
| MaeI | CTAG | 5 cut(s) | 35, 1082, 1299, 1407, 2126 |
| MaeII | ACGT | 2 cut(s) | 1148, 1685 |
| MaeIII | GTNAC | 5 cut(s) | 700, 806, 931, 1753, 1833 |
| MalI | GATC | 2 cut(s) | 1496, 2143 |
| MboI | GATC | 2 cut(s) | 1494, 2141 |
| MfeI | CAATTG | 3 cut(s) | 462, 1504, 2093 |
| MhlI | GDGCHC | 3 cut(s) | 427, 1670, 1735 |
| MlsI | TGGCCA | 2 cut(s) | 215, 662 |
| MluNI | TGGCCA | 2 cut(s) | 215, 662 |
| MlyI | GAGTC | 3 cut(s) | 263, 563, 913 |
| MmeI | TCCRAC | 1 cut(s) | 1746 |
| Mox20I | TGGCCA | 2 cut(s) | 215, 662 |
| Mph1103I | ATGCAT | 1 cut(s) | 1167 |
| MscI | TGGCCA | 2 cut(s) | 215, 662 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1160, 1176, 1760, 1980 |
| Msp20I | TGGCCA | 2 cut(s) | 215, 662 |
| MspA1I | CMGCKG | 1 cut(s) | 2188 |
| MspI | CCGG | 2 cut(s) | 89, 812 |
| MspR9I | CCNGG | 2 cut(s) | 217, 812 |
| MunI | CAATTG | 3 cut(s) | 462, 1504, 2093 |
| Mva1269I | GAATGC | 1 cut(s) | 1165 |
| MvaI | CCWGG | 1 cut(s) | 217 |
| MvnI | CGCG | 1 cut(s) | 8 |
| NciI | CCSGG | 1 cut(s) | 812 |
| NcoI | CCATGG | 1 cut(s) | 756 |
| NdeI | CATATG | 1 cut(s) | 1522 |
| NdeII | GATC | 2 cut(s) | 1494, 2141 |
| NlaIII | CATG | 7 cut(s) | 240, 760, 1146, 1501, 1739, 1832, 1947 |
| NlaIV | GGNNCC | 1 cut(s) | 1236 |
| NmeAIII | GCCGAG | 1 cut(s) | 1456 |
| NmuCI | GTSAC | 3 cut(s) | 700, 806, 1753 |
| NsiI | ATGCAT | 1 cut(s) | 1167 |
| NspI | RCATGY | 2 cut(s) | 1146, 1947 |
| PaeR7I | CTCGAG | 1 cut(s) | 1014 |
| PciI | ACATGT | 1 cut(s) | 1142 |
| PctI | GAATGC | 1 cut(s) | 1165 |
| PfeI | GAWTC | 6 cut(s) | 10, 92, 1244, 1739, 2108, 2173 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 237, 883 |
| PkrI | GCNGC | 5 cut(s) | 7, 442, 1449, 2187, 2190 |
| PleI | GAGTC | 3 cut(s) | 262, 562, 913 |
| PpsI | GAGTC | 3 cut(s) | 262, 562, 913 |
| PscI | ACATGT | 1 cut(s) | 1142 |
| PshBI | ATTAAT | 1 cut(s) | 1791 |
| PsiI | TTATAA | 1 cut(s) | 1383 |
| Psp124BI | GAGCTC | 1 cut(s) | 1670 |
| Psp6I | CCWGG | 1 cut(s) | 215 |
| PspFI | CCCAGC | 3 cut(s) | 65, 539, 1529 |
| PspGI | CCWGG | 1 cut(s) | 215 |
| PspN4I | GGNNCC | 1 cut(s) | 1236 |
| PspPI | GGNCC | 1 cut(s) | 499 |
| PspXI | VCTCGAGB | 1 cut(s) | 1014 |
| PstI | CTGCAG | 1 cut(s) | 1971 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2188, 2191 |
| PvuII | CAGCTG | 1 cut(s) | 2188 |
| RsaI | GTAC | 5 cut(s) | 300, 1147, 1519, 1883, 2060 |
| RsaNI | GTAC | 5 cut(s) | 299, 1146, 1518, 1882, 2059 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1160, 1176, 1760, 1980 |
| SacI | GAGCTC | 1 cut(s) | 1670 |
| SatI | GCNGC | 5 cut(s) | 6, 441, 1448, 2186, 2189 |
| Sau3AI | GATC | 2 cut(s) | 1494, 2141 |
| Sau96I | GGNCC | 1 cut(s) | 499 |
| SchI | GAGTC | 3 cut(s) | 263, 563, 913 |
| ScrFI | CCNGG | 2 cut(s) | 217, 812 |
| SduI | GDGCHC | 3 cut(s) | 427, 1670, 1735 |
| SfaNI | GCATC | 6 cut(s) | 393, 1152, 1542, 1647, 1854, 1984 |
| SfcI | CTRYAG | 1 cut(s) | 1967 |
| Sfr274I | CTCGAG | 1 cut(s) | 1014 |
| SinI | GGWCC | 1 cut(s) | 499 |
| SlaI | CTCGAG | 1 cut(s) | 1014 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1160, 1176, 1760, 1980 |
| SmlI | CTYRAG | 4 cut(s) | 71, 251, 494, 1014 |
| SmoI | CTYRAG | 4 cut(s) | 71, 251, 494, 1014 |
| SsiI | CCGC | 3 cut(s) | 6, 329, 502 |
| SspI | AATATT | 1 cut(s) | 414 |
| SspMI | CTAG | 5 cut(s) | 35, 1082, 1299, 1407, 2126 |
| SstI | GAGCTC | 1 cut(s) | 1670 |
| StyD4I | CCNGG | 2 cut(s) | 215, 810 |
| StyI | CCWWGG | 1 cut(s) | 756 |
| TaaI | ACNGT | 3 cut(s) | 298, 1259, 2223 |
| TaiI | ACGT | 2 cut(s) | 1151, 1688 |
| TaqI | TCGA | 6 cut(s) | 242, 421, 535, 629, 1015, 1986 |
| TatI | WGTACW | 1 cut(s) | 2058 |
| TauI | GCSGC | 1 cut(s) | 8 |
| TfiI | GAWTC | 6 cut(s) | 10, 92, 1244, 1739, 2108, 2173 |
| TscAI | CASTG | 1 cut(s) | 1264 |
| TseFI | GTSAC | 3 cut(s) | 700, 806, 1753 |
| TseI | GCWGC | 4 cut(s) | 440, 1447, 2185, 2188 |
| Tsp45I | GTSAC | 3 cut(s) | 700, 806, 1753 |
| TspRI | CASTG | 1 cut(s) | 1264 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 237, 883 |
| VpaK11BI | GGWCC | 1 cut(s) | 499 |
| VspI | ATTAAT | 1 cut(s) | 1791 |
| XapI | RAATTY | 4 cut(s) | 448, 1127, 1338, 2198 |
| XceI | RCATGY | 2 cut(s) | 1146, 1947 |
| XhoI | CTCGAG | 1 cut(s) | 1014 |
| XmiI | GTMKAC | 1 cut(s) | 1688 |
| XspI | CTAG | 5 cut(s) | 35, 1082, 1299, 1407, 2126 |
| Zsp2I | ATGCAT | 1 cut(s) | 1167 |