RLG00000028810

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005468
Physical Location & Seq
Reverse (-)
28397844 .. 28405578
7735 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028810

Sequence Viewer

Length: 2436 bp
ATGGCCGCCAAACCCATTTCCCGGCGACCTGCCTTGACAGTTCTCCGAGAGCAATTCCTCAGACCCAACCGCAACTCCAAACCTTCTCCTCCTCCTCCTCCTCCTCTCAGGTCCTCCGATGCCGAAAAGCCCAAATCCCAAGGCAGCAAAACCGCCAAAGCCATGGCGTCGCTCATCAACTCCAACCCATGGTCATCTCGCCTCCAGTCTTCTCTCTCTTCTCTCTCTCCCTCCATCTCCACCACCACCGTCTCCCAAACCCTCCGCCGCATCAAAACCCCAACCCAGGCCCTCAAGTTCTTCAACTGGGCCGAATCAATGGGCTTCTCCCACAACCCCCAATCCTTCTTCATGTTGCTTGAGATTTTCGGCCGGAACCGGAATCTCAATGCCGCTAGAAATCTCTTGTTTTCGATTGAGAAGAGGTCCAATGGGAAGGTTAAGCTCGAGGACCGGTTTTTTAATAGCTTGATTAGGAGCTATGGGGAAGCAGGGTTGTTCCAGGAGTCTGTAAAGCTTTTTGGGACGATGAAGTCGATGGGGATATCGGCTTCAGTTGTTACTTTCAATAGTTTGCTTTCGATTTTGCTTAAGAGGGGTAGGACTAGTATGGCTAAGAATGTTTATGATGAAATGCTTGGGATGTATGGAGTTGCGCCGGATACGCATACGTTTAATATTTTGATTAGGGGGTTCTGTATGAACTCCATGGTTGATGAGGGTTTTCATTATTTTAAGGAAATGTCGAGGTTGAAATGTGAGCCGGATGTGGTTACTTATAATACGATTGTTGATGGGTTGTGTAGAGCAGGGAAGGTTGAGATTGCGCGTAATGTGGTGAAGGGGATGAGGAAGAGAAGTGGGGAGTTGAATCCGAATGTTGTTACTTATACGACATTGATTAGAGGGTATTGTGTGAAAGAAGATGTTGATGAGGCTTTGTGTGTTTTGGAGGAGATGGCTAGTCAAGGGTTGAAACCAAATGATATTACCTATAATACTCTGCTTAAGGGGCTTTGTGAAGCAAAGAAGCTAGATAAGATCAAAGAAGTCTTGGAGGGAACAATGAGAGGTGAAGGATTTACTCCTGATACGTGTACGTTCAACACACTGCTGCATTCACATTGCAATGCAGGAAACTTGGAGGAAGCATTGAAGGTTTTCACAATGATGTCAGAGTTACAGGTCCCTCCAGATTCAGCTACATACAGCGTCTTGATACGCAGTTTGTGTCAACGAAGGGATTATGGTAAAGCTGAGGAGTTGTTTGACGAGCTATCCAAGAAACAAATCTTGTTAAGTGATCGTGGCTGTACACCTGTTGTTGCCTCTTACAAACCTATCTTTGAGTACTTATGTAGTCATGGGAGAACTAAGAAAGCAGATGAAGTGTTTAGGCAGCTACTGAAAAGAGGAACACAAGATCCTCCATCCTACAAGACTTTGATCATGGGCCACTGTAGGGAAGGCACATTTGAAGCTGGGTACAAACTCCTAGTCTTGATGCTTAGAAGGGATTATGTTCCTGATGTCGAGATTTATGATTCCTTGATTGATGGCCTGTTGGAAAAGGGTAAGCCCCTTCTTGCACAACAGACTCTAGAGAAGATGCTGAAGAGCTCTCATCTCCCAAAAACATCTACTTTCCATTCTATACTGGCAGCTCTTTTAGAAATGCATTGTGCCCGTGAATCTGCCAGCTTTGTTATTTTAATGTTGGAGAAAAACATTAGACAAAATATTAACCTCTCAACAGATCTTGTAAGGCTTCTTTTCAGTGAGGGATTGCGAGATAAAGCATTTGAGATTATAGGGATGCTGCATGATAACGGATACTTGATTAAAATAGAAGAAGTGGTCAGTTTCCTTTACCAGAGCAGAAAGCTAATAGAGGCATGTGAAATATTGCGATTTAGTCTGCGCAAGCAAGCAAATGTCAGTATTGATATATTTGACCAAGTTCTATTAGGGCTATGTGATATCAATAAGCTTCGAGAAGCATTTGGCTTGTACTATGAACTGATTGAGAATGGCGACCACCAGCAGTTGCCGTGCTTACATCATTTAAAGTCTTCCCTAGAGGTTGCAGAAGACCATGCTGTCCAGAGTGCTGATGTAATTCTTCTCAACATTGGGAATGCCGGAATGGGCTATCAGGGTTGTTATAGTTGTTCAGAGTTGGCTGAACAGTTCTTCACATCAAGATATGTTCTTCGCTTGGCTTCTGGAGAAATTCCTCAGCAACTAAAGCAGCTTACATCCCTCGCATATGTCAACGTCTCTCACAACAATCTCACAGGTTCCATACCACAAGGGTGCCAATTTAATACGTTCAAGAGGACTTCATTTGAGGGAACCCGGGAATTGTGTGGAGAACCATTGCCAAAGAAATGTGGAAATGCTAAGACTCCAACTCCACGCCACCCTCAAGCATAG

Protein Analysis

812

Amino Acids

91.12

Weight (kDa)

8.9

Isoelectric Point (pI)

45.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 154 - 193 5.4e-07 PPR repeat family
PPR_2 PF13041 185 - 233 3e-13 PPR repeat family
PPR_1 PF12854 217 - 249 6.9e-08 PPR repeat
PPR_2 PF13041 220 - 269 4.1e-16 PPR repeat family
PPR PF01535 224 - 253 9.6e-06 PPR repeat
PPR_long PF17177 235 - 354 2e-11 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 253 - 284 2.4e-12 PPR repeat
PPR_2 PF13041 255 - 288 1.7e-07 PPR repeat family
TPR_24 PF23276 269 - 353 1.9e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 290 - 320 7.9e-11 PPR repeat
PPR_3 PF13812 290 - 337 1.5e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 292 - 340 4.3e-19 PPR repeat family
PPR PF01535 295 - 324 2.3e-07 PPR repeat
PPR_3 PF13812 316 - 373 1.1e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 324 - 347 3.9e-07 PPR repeat
PPR_3 PF13812 356 - 408 3.5e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 360 - 391 1e-10 PPR repeat
PPR_2 PF13041 363 - 412 3.2e-16 PPR repeat family
PPR PF01535 367 - 394 6.6e-06 PPR repeat
PPR_1 PF12854 396 - 425 6.6e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 780
AasI GACNNNNNNGTC 2 cut(s) 532, 2099
Acc16I TGCGCA 1 cut(s) 1922
Acc36I ACCTGC 1 cut(s) 37
AccB1I GGYRCC 1 cut(s) 2316
AccB7I CCANNNNNTGG 1 cut(s) 189
AccII CGCG 1 cut(s) 829
AciI CCGC 6 cut(s) 6, 70, 153, 265, 268, 393
AclWI GGATC 1 cut(s) 1418
AcoI YGGCCR 2 cut(s) 3, 370
AcsI RAATTY 1 cut(s) 2232
AcuI CTGAAG 2 cut(s) 537, 1634
AcyI GRCGYC 1 cut(s) 167
AfaI GTAC 5 cut(s) 1099, 1315, 1352, 1487, 2012
AfiI CCNNNNNNNGG 4 cut(s) 21, 189, 286, 1462
AflII CTTAAG 2 cut(s) 590, 1007
AflIII ACRYGT 1 cut(s) 1094
AgeI ACCGGT 1 cut(s) 453
AgsI TTSAA 9 cut(s) 304, 568, 754, 871, 976, 1105, 1156, 1478, 2335
AhlI ACTAGT 1 cut(s) 605
AjnI CCWGG 2 cut(s) 285, 501
AleI CACNNNNGTG 1 cut(s) 2314
AloI GAACNNNNNNTCC 2 cut(s) 1408, 1440
Alw21I GWGCWC 1 cut(s) 1622
Alw26I GTCTC 2 cut(s) 256, 2284
AlwI GGATC 1 cut(s) 1418
AlwNI CAGNNNCTG 1 cut(s) 1405
Ama87I CYCGRG 2 cut(s) 446, 2358
AoxI GGCC 6 cut(s) 3, 288, 309, 370, 1453, 1558
ApeKI GCWGC 6 cut(s) 144, 1114, 1399, 1661, 1819, 2251
ApoI RAATTY 1 cut(s) 2232
ArsI GACNNNNNNTTYG 2 cut(s) 1482, 1514
AsiGI ACCGGT 1 cut(s) 453
Asp700I GAANNNNTTC 1 cut(s) 1160
AspLEI GCGC 3 cut(s) 658, 829, 1923
AspS9I GGNCC 7 cut(s) 111, 289, 309, 426, 451, 1186, 1453
AsuC2I CCSGG 3 cut(s) 22, 2359, 2360
AsuHPI GGTGA 2 cut(s) 850, 1085
AvaI CYCGRG 2 cut(s) 446, 2358
AvaII GGWCC 4 cut(s) 111, 426, 451, 1186
BaeGI GKGCMC 1 cut(s) 1687
BanI GGYRCC 1 cut(s) 2316
BanII GRGCYC 1 cut(s) 1622
BbsI GAAGAC 3 cut(s) 201, 2064, 2097
Bbv12I GWGCWC 1 cut(s) 1622
BbvCI CCTCAGC 2 cut(s) 1257, 2238
BbvI GCAGC 6 cut(s) 156, 1101, 1411, 1673, 1806, 2263
BccI CCATC 6 cut(s) 242, 532, 788, 952, 1438, 1550
BceAI ACGGC 1 cut(s) 2035
BciT130I CCWGG 2 cut(s) 287, 503
BciVI GTATCC 2 cut(s) 655, 1826
BclI TGATCA 1 cut(s) 1446
BcnI CCSGG 3 cut(s) 22, 2359, 2360
BcoDI GTCTC 2 cut(s) 256, 2284
BcuI ACTAGT 1 cut(s) 605
BfaI CTAG 7 cut(s) 396, 606, 963, 1034, 1496, 1601, 2078
BfmI CTRYAG 1 cut(s) 1459
BfrI CTTAAG 2 cut(s) 590, 1007
BfuAI ACCTGC 1 cut(s) 37
BfuI GTATCC 2 cut(s) 655, 1826
BglII AGATCT 1 cut(s) 1756
BisI GCNGC 9 cut(s) 6, 145, 268, 393, 1115, 1400, 1662, 1820, 2252
BlsI GCNGC 9 cut(s) 7, 146, 269, 394, 1116, 1401, 1663, 1821, 2253
BmcAI AGTACT 1 cut(s) 1352
Bme1390I CCNGG 5 cut(s) 22, 287, 503, 2359, 2360
Bme18I GGWCC 4 cut(s) 111, 426, 451, 1186
BmeT110I CYCGRG 2 cut(s) 446, 2358
BmgT120I GGNCC 7 cut(s) 111, 289, 309, 426, 451, 1186, 1453
BmiI GGNNCC 5 cut(s) 377, 1188, 2302, 2318, 2356
BmrFI CCNGG 5 cut(s) 22, 287, 503, 2359, 2360
BmrI ACTGGG 1 cut(s) 316
BmsI GCATC 5 cut(s) 109, 279, 1494, 1599, 1806
BmuI ACTGGG 1 cut(s) 316
BpiI GAAGAC 3 cut(s) 201, 2064, 2097
BpmI CTGGAG 3 cut(s) 188, 1176, 2247
Bpu10I CCTNAGC 2 cut(s) 1257, 2238
BpuEI CTTGAG 3 cut(s) 278, 380, 2412
BpuMI CCSGG 3 cut(s) 22, 2359, 2360
BsaAI YACGTR 1 cut(s) 1095
BsaHI GRCGYC 1 cut(s) 167
BsaJI CCNNGG 6 cut(s) 139, 162, 188, 285, 708, 2358
BsaWI WCCGGW 2 cut(s) 378, 453
BsaXI ACNNNNNCTCC 4 cut(s) 59, 89, 2398, 2428
Bsc4I CCNNNNNNNGG 4 cut(s) 21, 189, 286, 1462
Bse118I RCCGGY 1 cut(s) 453
Bse1I ACTGG 3 cut(s) 205, 311, 1662
Bse3DI GCAATG 3 cut(s) 1123, 1135, 2378
BseBI CCWGG 2 cut(s) 287, 503
BseDI CCNNGG 6 cut(s) 139, 162, 188, 285, 708, 2358
BseGI GGATG 6 cut(s) 648, 772, 852, 1430, 1821, 2258
BseLI CCNNNNNNNGG 4 cut(s) 21, 189, 286, 1462
BseMI GCAATG 3 cut(s) 1123, 1135, 2378
BseMII CTCAG 4 cut(s) 73, 121, 1248, 2252
BseNI ACTGG 3 cut(s) 205, 311, 1662
BseRI GAGGAG 8 cut(s) 78, 81, 84, 87, 90, 93, 968, 1274
BseSI GKGCMC 1 cut(s) 1687
BseX3I CGGCCG 1 cut(s) 370
BseXI GCAGC 6 cut(s) 156, 1101, 1411, 1673, 1806, 2263
BseYI CCCAGC 1 cut(s) 1481
Bsh1236I CGCG 1 cut(s) 829
Bsh1285I CGRYCG 1 cut(s) 373
BshFI GGCC 6 cut(s) 5, 290, 311, 372, 1455, 1560
BshNI GGYRCC 1 cut(s) 2316
BshTI ACCGGT 1 cut(s) 453
BsiEI CGRYCG 1 cut(s) 373
BsiHKAI GWGCWC 1 cut(s) 1622
BsiHKCI CYCGRG 2 cut(s) 446, 2358
BsiSI CCGG 8 cut(s) 22, 373, 379, 454, 659, 764, 2142, 2359
BslFI GGGAC 2 cut(s) 538, 1172
BslI CCNNNNNNNGG 4 cut(s) 21, 189, 286, 1462
BsmAI GTCTC 2 cut(s) 256, 2284
BsmBI CGTCTC 2 cut(s) 256, 2284
BsmFI GGGAC 2 cut(s) 538, 1172
BsmI GAATGC 2 cut(s) 1117, 2143
BsnI GGCC 6 cut(s) 5, 290, 311, 372, 1455, 1560
BsoBI CYCGRG 2 cut(s) 446, 2358
Bsp1286I GDGCHC 2 cut(s) 1622, 1687
Bsp1407I TGTACA 1 cut(s) 1313
Bsp143I GATC 5 cut(s) 1041, 1303, 1423, 1446, 1756
Bsp19I CCATGG 3 cut(s) 162, 188, 708
BspACI CCGC 6 cut(s) 6, 70, 153, 265, 268, 393
BspANI GGCC 6 cut(s) 5, 290, 311, 372, 1455, 1560
BspCNI CTCAG 4 cut(s) 72, 120, 1249, 2251
BspFNI CGCG 1 cut(s) 829
BspLI GGNNCC 5 cut(s) 377, 1188, 2302, 2318, 2356
BspMI ACCTGC 1 cut(s) 37
BspPI GGATC 1 cut(s) 1418
BspQI GCTCTTC 1 cut(s) 1610
BspT107I GGYRCC 1 cut(s) 2316
BspTI CTTAAG 2 cut(s) 590, 1007
BsrDI GCAATG 3 cut(s) 1123, 1135, 2378
BsrFI RCCGGY 1 cut(s) 453
BsrGI TGTACA 1 cut(s) 1313
BsrI ACTGG 3 cut(s) 205, 311, 1662
BssAI RCCGGY 1 cut(s) 453
BssECI CCNNGG 6 cut(s) 139, 162, 188, 285, 708, 2358
BssMI GATC 5 cut(s) 1041, 1303, 1423, 1446, 1756
BssNI GRCGYC 1 cut(s) 167
BssT1I CCWWGG 4 cut(s) 139, 162, 188, 708
Bst2UI CCWGG 2 cut(s) 287, 503
Bst4CI ACNGT 4 cut(s) 40, 250, 1460, 2190
Bst6I CTCTTC 4 cut(s) 223, 416, 848, 1610
BstACI GRCGYC 1 cut(s) 167
BstAFI CTTAAG 2 cut(s) 590, 1007
BstAUI TGTACA 1 cut(s) 1313
BstBAI YACGTR 1 cut(s) 1095
BstC8I GCNNGC 3 cut(s) 1699, 1925, 1929
BstDEI CTNAG 8 cut(s) 59, 107, 615, 1257, 1374, 1508, 2238, 2403
BstDSI CCRYGG 3 cut(s) 162, 188, 708
BstF5I GGATG 6 cut(s) 648, 772, 852, 1430, 1821, 2258
BstFNI CGCG 1 cut(s) 829
BstHHI GCGC 3 cut(s) 658, 829, 1923
BstKTI GATC 5 cut(s) 1044, 1306, 1426, 1449, 1759
BstMAI GTCTC 2 cut(s) 256, 2284
BstMBI GATC 5 cut(s) 1041, 1303, 1423, 1446, 1756
BstMCI CGRYCG 1 cut(s) 373
BstMWI GCNNNNNNNGC 3 cut(s) 664, 1012, 2248
BstNI CCWGG 2 cut(s) 287, 503
BstNSI RCATGY 1 cut(s) 1899
BstSCI CCNGG 5 cut(s) 20, 285, 501, 2357, 2358
BstSFI CTRYAG 1 cut(s) 1459
BstSLI GKGCMC 1 cut(s) 1687
BstUI CGCG 1 cut(s) 829
BstV1I GCAGC 6 cut(s) 156, 1101, 1411, 1673, 1806, 2263
BstV2I GAAGAC 3 cut(s) 201, 2064, 2097
BstX2I RGATCY 2 cut(s) 1423, 1756
BstXI CCANNNNNNTGG 1 cut(s) 163
BstYI RGATCY 2 cut(s) 1423, 1756
BstZI CGGCCG 1 cut(s) 370
BsuI GTATCC 2 cut(s) 655, 1826
BsuRI GGCC 6 cut(s) 5, 290, 311, 372, 1455, 1560
BtgI CCRYGG 3 cut(s) 162, 188, 708
BtsCI GGATG 6 cut(s) 648, 772, 852, 1430, 1821, 2258
BtsI GCAGTG 1 cut(s) 1109
BtsIMutI CAGTG 3 cut(s) 1109, 1456, 1783
BveI ACCTGC 1 cut(s) 37
Cac8I GCNNGC 3 cut(s) 1699, 1925, 1929
CaiI CAGNNNCTG 1 cut(s) 1405
CfoI GCGC 3 cut(s) 658, 829, 1923
Cfr10I RCCGGY 1 cut(s) 453
Cfr13I GGNCC 7 cut(s) 111, 289, 309, 426, 451, 1186, 1453
Cfr9I CCCGGG 1 cut(s) 2358
CseI GACGC 2 cut(s) 156, 1201
Csp6I GTAC 5 cut(s) 1098, 1314, 1351, 1486, 2011
CspAI ACCGGT 1 cut(s) 453
CviAII CATG 9 cut(s) 163, 189, 352, 709, 1364, 1450, 1823, 1896, 2096
CviQI GTAC 5 cut(s) 1098, 1314, 1351, 1486, 2011
DdeI CTNAG 8 cut(s) 59, 107, 615, 1257, 1374, 1508, 2238, 2403
DpnI GATC 5 cut(s) 1043, 1305, 1425, 1448, 1758
DpnII GATC 5 cut(s) 1041, 1303, 1423, 1446, 1756
DraI TTTAAA 1 cut(s) 2067
DrdI GACNNNNNNGTC 2 cut(s) 532, 2099
DseDI GACNNNNNNGTC 2 cut(s) 532, 2099
EaeI YGGCCR 2 cut(s) 3, 370
EagI CGGCCG 1 cut(s) 370
Eam1104I CTCTTC 4 cut(s) 223, 416, 848, 1610
EarI CTCTTC 4 cut(s) 223, 416, 848, 1610
EciI GGCGGA 1 cut(s) 254
Ecl136II GAGCTC 1 cut(s) 1620
EclXI CGGCCG 1 cut(s) 370
Eco130I CCWWGG 4 cut(s) 139, 162, 188, 708
Eco24I GRGCYC 1 cut(s) 1622
Eco32I GATATC 2 cut(s) 546, 1981
Eco47I GGWCC 4 cut(s) 111, 426, 451, 1186
Eco52I CGGCCG 1 cut(s) 370
Eco53kI GAGCTC 1 cut(s) 1620
Eco57I CTGAAG 2 cut(s) 537, 1634
Eco88I CYCGRG 2 cut(s) 446, 2358
EcoICRI GAGCTC 1 cut(s) 1620
EcoO109I RGGNCCY 3 cut(s) 111, 289, 1186
EcoRII CCWGG 2 cut(s) 285, 501
EcoRV GATATC 2 cut(s) 546, 1981
EcoT14I CCWWGG 4 cut(s) 139, 162, 188, 708
EcoT22I ATGCAT 1 cut(s) 1680
EcoT38I GRGCYC 1 cut(s) 1622
ErhI CCWWGG 4 cut(s) 139, 162, 188, 708
Esp3I CGTCTC 2 cut(s) 256, 2284
FaeI CATG 9 cut(s) 166, 192, 355, 712, 1367, 1453, 1826, 1899, 2099
FaqI GGGAC 2 cut(s) 538, 1172
FatI CATG 9 cut(s) 162, 188, 351, 708, 1363, 1449, 1822, 1895, 2095
FauNDI CATATG 1 cut(s) 2269
FbaI TGATCA 1 cut(s) 1446
Fnu4HI GCNGC 9 cut(s) 6, 145, 268, 393, 1115, 1400, 1662, 1820, 2252
FokI GGATG 6 cut(s) 655, 779, 859, 1417, 1828, 2245
FriOI GRGCYC 1 cut(s) 1622
Fsp4HI GCNGC 9 cut(s) 6, 145, 268, 393, 1115, 1400, 1662, 1820, 2252
FspBI CTAG 7 cut(s) 396, 606, 963, 1034, 1496, 1601, 2078
FspI TGCGCA 1 cut(s) 1922
GlaI GCGC 3 cut(s) 657, 828, 1922
GluI GCNGC 9 cut(s) 6, 145, 268, 393, 1115, 1400, 1662, 1820, 2252
GsaI CCCAGC 1 cut(s) 1485
GsuI CTGGAG 3 cut(s) 188, 1176, 2247
HaeIII GGCC 6 cut(s) 5, 290, 311, 372, 1455, 1560
HapII CCGG 8 cut(s) 22, 373, 379, 454, 659, 764, 2142, 2359
HgaI GACGC 2 cut(s) 156, 1201
HhaI GCGC 3 cut(s) 658, 829, 1923
Hin1I GRCGYC 1 cut(s) 167
Hin1II CATG 9 cut(s) 166, 192, 355, 712, 1367, 1453, 1826, 1899, 2099
Hin6I GCGC 3 cut(s) 656, 827, 1921
HinP1I GCGC 3 cut(s) 656, 827, 1921
HincII GTYRAC 2 cut(s) 1235, 2275
HindII GTYRAC 2 cut(s) 1235, 2275
HindIII AAGCTT 2 cut(s) 515, 1988
HinfI GANTC 9 cut(s) 314, 382, 506, 871, 1196, 1544, 1597, 1691, 2407
HpaII CCGG 8 cut(s) 22, 373, 379, 454, 659, 764, 2142, 2359
HphI GGTGA 2 cut(s) 850, 1085
Hpy166II GTNNAC 4 cut(s) 1098, 1235, 1316, 2275
Hpy188I TCNGA 6 cut(s) 47, 62, 118, 876, 1177, 2176
Hpy8I GTNNAC 4 cut(s) 1098, 1235, 1316, 2275
Hpy99I CGWCG 1 cut(s) 172
HpyCH4III ACNGT 4 cut(s) 40, 250, 1460, 2190
HpyCH4IV ACGT 5 cut(s) 671, 1094, 1100, 2277, 2330
HpyCH4V TGCA 7 cut(s) 1117, 1128, 1133, 1589, 1678, 1822, 2087
HpyF10VI GCNNNNNNNGC 3 cut(s) 664, 1012, 2248
HpyF3I CTNAG 8 cut(s) 59, 107, 615, 1257, 1374, 1508, 2238, 2403
HpySE526I ACGT 5 cut(s) 671, 1094, 1100, 2277, 2330
Hsp92I GRCGYC 1 cut(s) 167
Hsp92II CATG 9 cut(s) 166, 192, 355, 712, 1367, 1453, 1826, 1899, 2099
HspAI GCGC 3 cut(s) 656, 827, 1921
Ksp22I TGATCA 1 cut(s) 1446
Kzo9I GATC 5 cut(s) 1041, 1303, 1423, 1446, 1756
LguI GCTCTTC 1 cut(s) 1610
LmnI GCTCC 1 cut(s) 477
Lsp1109I GCAGC 6 cut(s) 156, 1101, 1411, 1673, 1806, 2263
LweI GCATC 5 cut(s) 109, 279, 1494, 1599, 1806
MaeI CTAG 7 cut(s) 396, 606, 963, 1034, 1496, 1601, 2078
MaeII ACGT 5 cut(s) 671, 1094, 1100, 2277, 2330
MaeIII GTNAC 4 cut(s) 559, 772, 883, 1179
MalI GATC 5 cut(s) 1043, 1305, 1425, 1448, 1758
MboI GATC 5 cut(s) 1041, 1303, 1423, 1446, 1756
MflI RGATCY 2 cut(s) 1423, 1756
MhlI GDGCHC 2 cut(s) 1622, 1687
MluCI AATT 5 cut(s) 53, 2118, 2232, 2321, 2363
MlyI GAGTC 3 cut(s) 515, 1591, 2401
MmeI TCCRAC 4 cut(s) 207, 1545, 1698, 2435
Mph1103I ATGCAT 1 cut(s) 1680
MroXI GAANNNNTTC 1 cut(s) 1160
MslI CAYNNNNRTG 3 cut(s) 1128, 1169, 2314
MspCI CTTAAG 2 cut(s) 590, 1007
MspI CCGG 8 cut(s) 22, 373, 379, 454, 659, 764, 2142, 2359
MspR9I CCNGG 5 cut(s) 22, 287, 503, 2359, 2360
Mva1269I GAATGC 2 cut(s) 1117, 2143
MvaI CCWGG 2 cut(s) 287, 503
MvnI CGCG 1 cut(s) 829
MwoI GCNNNNNNNGC 3 cut(s) 664, 1012, 2248
NciI CCSGG 3 cut(s) 22, 2359, 2360
NcoI CCATGG 3 cut(s) 162, 188, 708
NdeI CATATG 1 cut(s) 2269
NdeII GATC 5 cut(s) 1041, 1303, 1423, 1446, 1756
NlaIII CATG 9 cut(s) 166, 192, 355, 712, 1367, 1453, 1826, 1899, 2099
NlaIV GGNNCC 5 cut(s) 377, 1188, 2302, 2318, 2356
NsbI TGCGCA 1 cut(s) 1922
NsiI ATGCAT 1 cut(s) 1680
NspI RCATGY 1 cut(s) 1899
OliI CACNNNNGTG 1 cut(s) 2314
PaeR7I CTCGAG 1 cut(s) 446
PciSI GCTCTTC 1 cut(s) 1610
PcsI WCGNNNNNNNCGW 1 cut(s) 533
PctI GAATGC 2 cut(s) 1117, 2143
PdmI GAANNNNTTC 1 cut(s) 1160
PfeI GAWTC 6 cut(s) 314, 382, 871, 1196, 1544, 1691
PflMI CCANNNNNTGG 1 cut(s) 189
PfoI TCCNGGA 1 cut(s) 501
PinAI ACCGGT 1 cut(s) 453
PkrI GCNGC 9 cut(s) 7, 146, 269, 394, 1116, 1401, 1663, 1821, 2253
PleI GAGTC 3 cut(s) 514, 1591, 2401
PpsI GAGTC 3 cut(s) 514, 1591, 2401
Ppu21I YACGTR 1 cut(s) 1095
PpuMI RGGWCCY 2 cut(s) 111, 1186
PsiI TTATAA 1 cut(s) 780
Psp124BI GAGCTC 1 cut(s) 1622
Psp5II RGGWCCY 2 cut(s) 111, 1186
Psp6I CCWGG 2 cut(s) 285, 501
PspFI CCCAGC 1 cut(s) 1481
PspGI CCWGG 2 cut(s) 285, 501
PspN4I GGNNCC 5 cut(s) 377, 1188, 2302, 2318, 2356
PspPI GGNCC 7 cut(s) 111, 289, 309, 426, 451, 1186, 1453
PspPPI RGGWCCY 2 cut(s) 111, 1186
PspXI VCTCGAGB 1 cut(s) 446
PstNI CAGNNNCTG 1 cut(s) 1405
PsuI RGATCY 2 cut(s) 1423, 1756
RsaI GTAC 5 cut(s) 1099, 1315, 1352, 1487, 2012
RsaNI GTAC 5 cut(s) 1098, 1314, 1351, 1486, 2011
RseI CAYNNNNRTG 3 cut(s) 1128, 1169, 2314
SacI GAGCTC 1 cut(s) 1622
SapI GCTCTTC 1 cut(s) 1610
SatI GCNGC 9 cut(s) 6, 145, 268, 393, 1115, 1400, 1662, 1820, 2252
Sau3AI GATC 5 cut(s) 1041, 1303, 1423, 1446, 1756
Sau96I GGNCC 7 cut(s) 111, 289, 309, 426, 451, 1186, 1453
ScaI AGTACT 1 cut(s) 1352
SchI GAGTC 3 cut(s) 515, 1591, 2401
ScrFI CCNGG 5 cut(s) 22, 287, 503, 2359, 2360
SduI GDGCHC 2 cut(s) 1622, 1687
SfaNI GCATC 5 cut(s) 109, 279, 1494, 1599, 1806
SfcI CTRYAG 1 cut(s) 1459
Sfr274I CTCGAG 1 cut(s) 446
SinI GGWCC 4 cut(s) 111, 426, 451, 1186
SlaI CTCGAG 1 cut(s) 446
SmaI CCCGGG 1 cut(s) 2360
SmiMI CAYNNNNRTG 3 cut(s) 1128, 1169, 2314
SmlI CTYRAG 6 cut(s) 293, 359, 446, 590, 1007, 2427
SmoI CTYRAG 6 cut(s) 293, 359, 446, 590, 1007, 2427
SpeI ACTAGT 1 cut(s) 605
Sse9I AATT 5 cut(s) 53, 2118, 2232, 2321, 2363
SsiI CCGC 6 cut(s) 6, 70, 153, 265, 268, 393
SspI AATATT 3 cut(s) 679, 1741, 1905
SspMI CTAG 7 cut(s) 396, 606, 963, 1034, 1496, 1601, 2078
SstI GAGCTC 1 cut(s) 1622
StyD4I CCNGG 5 cut(s) 20, 285, 501, 2357, 2358
StyI CCWWGG 4 cut(s) 139, 162, 188, 708
TaaI ACNGT 4 cut(s) 40, 250, 1460, 2190
TaiI ACGT 5 cut(s) 674, 1097, 1103, 2280, 2333
TaqI TCGA 7 cut(s) 413, 447, 536, 581, 746, 1533, 1993
TasI AATT 5 cut(s) 53, 2118, 2232, 2321, 2363
TatI WGTACW 3 cut(s) 1313, 1350, 2010
TauI GCSGC 3 cut(s) 8, 270, 395
TfiI GAWTC 6 cut(s) 314, 382, 871, 1196, 1544, 1691
TscAI CASTG 3 cut(s) 1116, 1463, 1783
TseI GCWGC 6 cut(s) 144, 1114, 1399, 1661, 1819, 2251
TspDTI ATGAA 8 cut(s) 340, 545, 645, 716, 716, 1401, 2031, 2334
TspGWI ACGGA 1 cut(s) 1845
TspMI CCCGGG 1 cut(s) 2358
TspRI CASTG 3 cut(s) 1116, 1463, 1783
Van91I CCANNNNNTGG 1 cut(s) 189
Vha464I CTTAAG 2 cut(s) 590, 1007
VpaK11BI GGWCC 4 cut(s) 111, 426, 451, 1186
XapI RAATTY 1 cut(s) 2232
XbaI TCTAGA 1 cut(s) 1600
XceI RCATGY 1 cut(s) 1899
XhoI CTCGAG 1 cut(s) 446
XmaI CCCGGG 1 cut(s) 2358
XmnI GAANNNNTTC 1 cut(s) 1160
XspI CTAG 7 cut(s) 396, 606, 963, 1034, 1496, 1601, 2078
ZrmI AGTACT 1 cut(s) 1352
Zsp2I ATGCAT 1 cut(s) 1680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.