Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003809.1

Orthogroup ID

OG0005468

Physical Location & Seq

Genomic Coordinates Forward (+)

94008 .. 101527

Gene Structure 7520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003809.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2742 bp

atggccgccaaacccattccctggcgaccagccttgacagttctccgagagcaattcctcagacccaaccgcaactccaaaccttctcctcctcctctcaggtcctccgatgctgaaaaccccgaaaagcccaaatcccaaggcagcaaaaccgccaaagccatgtcgtcgctcatcaactccaacccatggtcatctcgcctccagtcttctctctcttctctctctccctccatctccaccaccaccgtctcccaaaccctccgccgcatcaaaaccccaacccaagccctcaaattcttcaactgggccgaagcaatgggcttctcccacaacccccaatccttcttcatgttgcttgagattttcggccggaaccggaatctcaatgccgctagaaatctcttgttttcgattgagaagaggtccaatgggaaggttaagctcgaggaccggttttttaatagcttgattaggagctatggggaagcagggttgttccaggagtctgtaaagctttttgggacgatgaagtcaatggggatatcggcttctgttgttactttcaatagtttgctttcgattttgcttaagaggggtaggactagtatggctaagaatgtttatgatgaaatgcttgggatgtatggagttacgcccgacacgcatacgtttaatattttgattagggggttctgtatgaactccatggttgatgagggttttcattattttaaggaaatgtcaaggttgaaatgtgggccggatgtggttacttataatacgattgttgatgggttgtgtagagcagggaaggttgagattgcgcgaaatgtggtgaagggtatgaggaagagaagtggggagttgaatccgaatgttgttacttatacgacattgattagagggtattgtgtgaaacaagatgttgatgaggctttgtgtgttttggaggagatgactagtcaagggttgaaaccaaatgaaattacctataatactctgcttaaagggctttgtgaagcaaagaagctagataaggtgaaagaagtcttggagggaacaatgagaggtgaaggatttactcctgatacgtgcacgttcaacacgctcatgcattcgcattgcaatgcaggaaacttagaggaagcattgaaggttttcacaatgatgtcagagttacaggtccctctggattcagctacatacagcgttttgatacgcagtttgtgtcagcgaagagattatggtaaagctgaggagttgtttgatgagctatccaagaaacaaatcttgttaagtgatcgtggctgtacacctgttgttgcctcatacaaacctatctttgagtacttatgtagtaatgggagaactaagaaagcagatgaagtgtttaggcagttactgaaaagaggaacacaagatcctccatcctacaagactttgatcatggggcactgtagggaaggcacatttgaagctggctacaaactcctagtctttatgcttagaagggattttgttcctgatgtcgagatttatgattccttgattgatggtctgttggaaaagggcaatccccttcttgcacaacagactctagagaagatgctgaagagctctcatctcccaaaaacatctactttccattctatactggccgctcttttagaaatgcattgtgcccgtgaatctgcaagctttattattttaatgttggagaaaaacattagacaaaatattaacctctcaacagatcttataaggcttcttttcagtgagggattgcgagataaagcatttgaggttgtagggatgctgcatgataacggatactcgattaaaatagaagaagtggtcagtttcctttaccagagcagaaagctaatagaggcatgtgaaatattgcgatttagtctgcagaagcaagaaaatgtcagtattgatatatttaaccaagttatattagggctatgtgatatcaataagcttcgagaagcatttggcttgtactatgaactgattgagaatggcgaccaccagcagttgctgtgcttacatcatttaaagtcttccctagaggttgcaggtagatcagttgaagctgactttgtctctaaaagaatgccaaaacatcagctggtgaacaaatctgggaattcaagacctcaactggttgttgtagtccttcagagttggctgaacagttcttcacataaagatacgttgtttgcttggtacagcatatcaagaccttctcagttgcccaaagatgctgataatgggctacccacttctcttcgacgcttgcagattttgtgttgccctgctctgcagtgcttgccagatagtggactaccctcttctctttctcatctaaatatcgatggacgacctttgcttgaaaaacgggtcttgcttgaactcctaatcgatgggtttgagataatcggtttgacaaagacatgccatatgaaggagaaacagaccatttacatttcctatgcagtttcgtggaaagtgggcaagacgatcccactagtacatcatccttgggaaactggtcaacagtctcttttcttgtgcgggcgtgccagcaccgttcaggtgcggtcgtcgggggtgtcccttgacctgacttctttcaagagattgtggacgaggagagcaccaacctcgtcatgggattctttgtgcctcgtggcgaggacttttgctgagcttcttgaaaatcacaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chal_sti_synt_C Chal_sti_synt_N PPR PPR_1 PPR_2 PPR_3

Protein Analysis

913

Amino Acids

103.0

Weight (kDa)

9.08

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02060
fragaria_vesca	FvH4_7g09470 FvH4_7g09470 FvH4_7g09470 FvH4_7g09470 FvH4_7g09470 FvH4_7g09470 FvH4_7g09470 FvH4_7g09470 FvH4_7g09470
malus_domestica	MD02G1218600.v1.1
prunus_persica	Prupe.2G122500_v2.0.a1
pyrus_communis	pycom12652g00050
rosa_chinensis	RchiOBHm_Chr1g0346171
rosa_laevigata	RLG00000028810
rosa_multiflora	Rmu_sc0003809.1_g000024
rosa_roxburghii	Rroxscaffold_4G00308800
rosa_rugosa	Rorug01G0178600
rosa_samantha	Rh1AG197700 Rh1BG162900 Rh1BG163000 Rh1BG163800 Rh1CG182800 Rh1DG193600 Rh1DG193700 Rh1DG194800
rosa_wichuraiana	Rw1G016310 Rw1G016590 Rw1G016620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	780, 1763
AasI	GACNNNNNNGTC	1 cut(s)	532
Acc36I	ACCTGC	1 cut(s)	2078
AccB7I	CCANNNNNTGG	3 cut(s)	21, 189, 2351
AccBSI	CCGCTC	1 cut(s)	1664
AccII	CGCG	1 cut(s)	829
AciI	CCGC	9 cut(s)	6, 70, 153, 265, 268, 393, 1662, 2586, 2611
AclWI	GGATC	2 cut(s)	1418, 2527
AcoI	YGGCCR	3 cut(s)	3, 370, 1659
AcsI	RAATTY	2 cut(s)	296, 2158
AcuI	CTGAAG	2 cut(s)	1634, 2174
AfaI	GTAC	5 cut(s)	1315, 1352, 2012, 2240, 2544
AfiI	CCNNNNNNNGG	5 cut(s)	21, 189, 2351, 2476, 2682
AflII	CTTAAG	1 cut(s)	590
AgeI	ACCGGT	1 cut(s)	453
AhlI	ACTAGT	3 cut(s)	605, 962, 2539
AjnI	CCWGG	2 cut(s)	20, 501
AjuI	GAANNNNNNNTTGG	2 cut(s)	1037, 1069
AloI	GAACNNNNNNTCC	2 cut(s)	1408, 1440
Alw21I	GWGCWC	3 cut(s)	1100, 1622, 2671
Alw26I	GTCTC	3 cut(s)	256, 2119, 2577
Alw44I	GTGCAC	1 cut(s)	1096
AlwI	GGATC	2 cut(s)	1418, 2527
AlwNI	CAGNNNCTG	2 cut(s)	1405, 2050
Ama87I	CYCGRG	1 cut(s)	446
AoxI	GGCC	5 cut(s)	3, 309, 370, 761, 1659
ApaLI	GTGCAC	1 cut(s)	1096
ApeKI	GCWGC	2 cut(s)	144, 1819
ApoI	RAATTY	2 cut(s)	296, 2158
ArsI	GACNNNNNNTTYG	2 cut(s)	1482, 1514
AsiGI	ACCGGT	1 cut(s)	453
Asp700I	GAANNNNTTC	1 cut(s)	1160
AspLEI	GCGC	1 cut(s)	829
AspS9I	GGNCC	6 cut(s)	102, 309, 426, 451, 761, 1186
AsuHPI	GGTGA	4 cut(s)	850, 1054, 1085, 2155
AvaI	CYCGRG	1 cut(s)	446
AvaII	GGWCC	4 cut(s)	102, 426, 451, 1186
BaeGI	GKGCMC	3 cut(s)	1100, 1458, 1687
BanII	GRGCYC	1 cut(s)	1622
BauI	CACGAG	1 cut(s)	2699
BbsI	GAAGAC	2 cut(s)	201, 2064
Bbv12I	GWGCWC	3 cut(s)	1100, 1622, 2671
BbvCI	CCTCAGC	1 cut(s)	1257
BbvI	GCAGC	2 cut(s)	156, 1806
BccI	CCATC	6 cut(s)	242, 788, 1438, 1550, 2381, 2429
BcgI	CGANNNNNNTGC	2 cut(s)	2658, 2692
BciT130I	CCWGG	2 cut(s)	22, 503
BciVI	GTATCC	1 cut(s)	1826
BclI	TGATCA	1 cut(s)	1446
BcoDI	GTCTC	3 cut(s)	256, 2119, 2577
BcuI	ACTAGT	3 cut(s)	605, 962, 2539
BfaI	CTAG	8 cut(s)	396, 606, 963, 1034, 1496, 1601, 2078, 2540
BfmI	CTRYAG	3 cut(s)	1459, 1919, 2333
BfrI	CTTAAG	1 cut(s)	590
BfuAI	ACCTGC	1 cut(s)	2078
BfuI	GTATCC	1 cut(s)	1826
BglII	AGATCT	1 cut(s)	1756
BisI	GCNGC	6 cut(s)	6, 145, 268, 393, 1662, 1820
BlpI	GCTNAGC	1 cut(s)	2718
BlsI	GCNGC	6 cut(s)	7, 146, 269, 394, 1663, 1821
BmcAI	AGTACT	1 cut(s)	1352
Bme1390I	CCNGG	2 cut(s)	22, 503
Bme18I	GGWCC	4 cut(s)	102, 426, 451, 1186
BmeT110I	CYCGRG	1 cut(s)	446
BmgT120I	GGNCC	6 cut(s)	102, 309, 426, 451, 761, 1186
BmiI	GGNNCC	2 cut(s)	377, 1188
BmrFI	CCNGG	2 cut(s)	22, 503
BmrI	ACTGGG	1 cut(s)	316
BmsI	GCATC	5 cut(s)	100, 279, 1599, 1806, 2263
BmuI	ACTGGG	1 cut(s)	316
BpiI	GAAGAC	2 cut(s)	201, 2064
BpmI	CTGGAG	1 cut(s)	188
Bpu10I	CCTNAGC	1 cut(s)	1257
Bpu1102I	GCTNAGC	1 cut(s)	2718
BpuEI	CTTGAG	1 cut(s)	380
Bsa29I	ATCGAT	2 cut(s)	2385, 2433
BsaAI	YACGTR	1 cut(s)	1095
BsaJI	CCNNGG	5 cut(s)	20, 139, 188, 708, 2552
BsaWI	WCCGGW	2 cut(s)	378, 453
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	5 cut(s)	21, 189, 2351, 2476, 2682
Bse118I	RCCGGY	1 cut(s)	453
Bse1I	ACTGG	5 cut(s)	205, 311, 1662, 2178, 2566
Bse3DI	GCAATG	3 cut(s)	324, 1123, 1135
BseBI	CCWGG	2 cut(s)	22, 503
BseCI	ATCGAT	2 cut(s)	2385, 2433
BseDI	CCNNGG	5 cut(s)	20, 139, 188, 708, 2552
BseGI	GGATG	5 cut(s)	648, 772, 1430, 1821, 2548
BseLI	CCNNNNNNNGG	5 cut(s)	21, 189, 2351, 2476, 2682
BseMI	GCAATG	3 cut(s)	324, 1123, 1135
BseMII	CTCAG	5 cut(s)	73, 112, 1248, 2273, 2709
BseNI	ACTGG	5 cut(s)	205, 311, 1662, 2178, 2566
BseRI	GAGGAG	6 cut(s)	78, 81, 84, 968, 1274, 2677
BseSI	GKGCMC	3 cut(s)	1100, 1458, 1687
BseX3I	CGGCCG	1 cut(s)	370
BseXI	GCAGC	2 cut(s)	156, 1806
Bsh1236I	CGCG	1 cut(s)	829
Bsh1285I	CGRYCG	2 cut(s)	373, 2615
BshFI	GGCC	5 cut(s)	5, 311, 372, 763, 1661
BshTI	ACCGGT	1 cut(s)	453
BshVI	ATCGAT	2 cut(s)	2385, 2433
BsiEI	CGRYCG	2 cut(s)	373, 2615
BsiHKAI	GWGCWC	3 cut(s)	1100, 1622, 2671
BsiHKCI	CYCGRG	1 cut(s)	446
BsiSI	CCGG	4 cut(s)	373, 379, 454, 764
BslFI	GGGAC	3 cut(s)	538, 1172, 2611
BslI	CCNNNNNNNGG	5 cut(s)	21, 189, 2351, 2476, 2682
BsmAI	GTCTC	3 cut(s)	256, 2119, 2577
BsmBI	CGTCTC	1 cut(s)	256
BsmFI	GGGAC	3 cut(s)	538, 1172, 2611
BsmI	GAATGC	2 cut(s)	1117, 2130
BsnI	GGCC	5 cut(s)	5, 311, 372, 763, 1661
BsoBI	CYCGRG	1 cut(s)	446
Bsp1286I	GDGCHC	5 cut(s)	1100, 1458, 1622, 1687, 2671
Bsp1407I	TGTACA	1 cut(s)	1313
Bsp143I	GATC	6 cut(s)	1303, 1423, 1446, 1756, 2093, 2532
Bsp1720I	GCTNAGC	1 cut(s)	2718
Bsp19I	CCATGG	2 cut(s)	188, 708
BspACI	CCGC	9 cut(s)	6, 70, 153, 265, 268, 393, 1662, 2586, 2611
BspANI	GGCC	5 cut(s)	5, 311, 372, 763, 1661
BspCNI	CTCAG	5 cut(s)	72, 111, 1249, 2272, 2710
BspDI	ATCGAT	2 cut(s)	2385, 2433
BspFNI	CGCG	1 cut(s)	829
BspLI	GGNNCC	2 cut(s)	377, 1188
BspMAI	CTGCAG	2 cut(s)	1923, 2337
BspMI	ACCTGC	1 cut(s)	2078
BspPI	GGATC	2 cut(s)	1418, 2527
BspQI	GCTCTTC	1 cut(s)	1610
BspTI	CTTAAG	1 cut(s)	590
BsrBI	CCGCTC	1 cut(s)	1664
BsrDI	GCAATG	3 cut(s)	324, 1123, 1135
BsrFI	RCCGGY	1 cut(s)	453
BsrGI	TGTACA	1 cut(s)	1313
BsrI	ACTGG	5 cut(s)	205, 311, 1662, 2178, 2566
BssAI	RCCGGY	1 cut(s)	453
BssECI	CCNNGG	5 cut(s)	20, 139, 188, 708, 2552
BssMI	GATC	6 cut(s)	1303, 1423, 1446, 1756, 2093, 2532
BssSI	CACGAG	1 cut(s)	2699
BssT1I	CCWWGG	4 cut(s)	139, 188, 708, 2552
Bst2BI	CACGAG	1 cut(s)	2699
Bst2UI	CCWGG	2 cut(s)	22, 503
Bst4CI	ACNGT	6 cut(s)	40, 250, 1460, 2207, 2571, 2602
Bst6I	CTCTTC	7 cut(s)	223, 416, 848, 1234, 1610, 2304, 2368
BstAFI	CTTAAG	1 cut(s)	590
BstAPI	GCANNNNNTGC	1 cut(s)	2341
BstAUI	TGTACA	1 cut(s)	1313
BstBAI	YACGTR	1 cut(s)	1095
BstC8I	GCNNGC	7 cut(s)	1483, 1699, 2309, 2342, 2588, 2592, 2596
BstDEI	CTNAG	9 cut(s)	59, 98, 615, 1141, 1257, 1374, 1508, 2259, 2718
BstDSI	CCRYGG	2 cut(s)	188, 708
BstF5I	GGATG	5 cut(s)	648, 772, 1430, 1821, 2548
BstFNI	CGCG	1 cut(s)	829
BstHHI	GCGC	1 cut(s)	829
BstKTI	GATC	6 cut(s)	1306, 1426, 1449, 1759, 2096, 2535
BstMAI	GTCTC	3 cut(s)	256, 2119, 2577
BstMBI	GATC	6 cut(s)	1303, 1423, 1446, 1756, 2093, 2532
BstMCI	CGRYCG	2 cut(s)	373, 2615
BstMWI	GCNNNNNNNGC	3 cut(s)	664, 1012, 2341
BstNI	CCWGG	2 cut(s)	22, 503
BstNSI	RCATGY	2 cut(s)	1899, 2469
BstSCI	CCNGG	2 cut(s)	20, 501
BstSFI	CTRYAG	3 cut(s)	1459, 1919, 2333
BstSLI	GKGCMC	3 cut(s)	1100, 1458, 1687
BstUI	CGCG	1 cut(s)	829
BstV1I	GCAGC	2 cut(s)	156, 1806
BstV2I	GAAGAC	2 cut(s)	201, 2064
BstX2I	RGATCY	2 cut(s)	1423, 1756
BstYI	RGATCY	2 cut(s)	1423, 1756
BstZI	CGGCCG	1 cut(s)	370
Bsu15I	ATCGAT	2 cut(s)	2385, 2433
BsuI	GTATCC	1 cut(s)	1826
BsuRI	GGCC	5 cut(s)	5, 311, 372, 763, 1661
BsuTUI	ATCGAT	2 cut(s)	2385, 2433
BtgI	CCRYGG	2 cut(s)	188, 708
BtsCI	GGATG	5 cut(s)	648, 772, 1430, 1821, 2548
BtsI	GCAGTG	1 cut(s)	2342
BtsIMutI	CAGTG	3 cut(s)	1456, 1783, 2342
BveI	ACCTGC	1 cut(s)	2078
Cac8I	GCNNGC	7 cut(s)	1483, 1699, 2309, 2342, 2588, 2592, 2596
CaiI	CAGNNNCTG	2 cut(s)	1405, 2050
CfoI	GCGC	1 cut(s)	829
Cfr10I	RCCGGY	1 cut(s)	453
Cfr13I	GGNCC	6 cut(s)	102, 309, 426, 451, 761, 1186
ClaI	ATCGAT	2 cut(s)	2385, 2433
CseI	GACGC	1 cut(s)	2313
Csp6I	GTAC	5 cut(s)	1314, 1351, 2011, 2239, 2543
CspAI	ACCGGT	1 cut(s)	453
CviQI	GTAC	5 cut(s)	1314, 1351, 2011, 2239, 2543
DdeI	CTNAG	9 cut(s)	59, 98, 615, 1141, 1257, 1374, 1508, 2259, 2718
DpnI	GATC	6 cut(s)	1305, 1425, 1448, 1758, 2095, 2534
DpnII	GATC	6 cut(s)	1303, 1423, 1446, 1756, 2093, 2532
DraI	TTTAAA	1 cut(s)	2067
DrdI	GACNNNNNNGTC	1 cut(s)	532
DseDI	GACNNNNNNGTC	1 cut(s)	532
EaeI	YGGCCR	3 cut(s)	3, 370, 1659
EagI	CGGCCG	1 cut(s)	370
Eam1104I	CTCTTC	7 cut(s)	223, 416, 848, 1234, 1610, 2304, 2368
EarI	CTCTTC	7 cut(s)	223, 416, 848, 1234, 1610, 2304, 2368
EciI	GGCGGA	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	1620
EclXI	CGGCCG	1 cut(s)	370
Eco130I	CCWWGG	4 cut(s)	139, 188, 708, 2552
Eco24I	GRGCYC	1 cut(s)	1622
Eco32I	GATATC	2 cut(s)	546, 1981
Eco47I	GGWCC	4 cut(s)	102, 426, 451, 1186
Eco52I	CGGCCG	1 cut(s)	370
Eco53kI	GAGCTC	1 cut(s)	1620
Eco57I	CTGAAG	2 cut(s)	1634, 2174
Eco88I	CYCGRG	1 cut(s)	446
EcoICRI	GAGCTC	1 cut(s)	1620
EcoO109I	RGGNCCY	2 cut(s)	102, 1186
EcoRI	GAATTC	1 cut(s)	2158
EcoRII	CCWGG	2 cut(s)	20, 501
EcoRV	GATATC	2 cut(s)	546, 1981
EcoT14I	CCWWGG	4 cut(s)	139, 188, 708, 2552
EcoT22I	ATGCAT	2 cut(s)	1119, 1680
EcoT38I	GRGCYC	1 cut(s)	1622
ErhI	CCWWGG	4 cut(s)	139, 188, 708, 2552
Esp3I	CGTCTC	1 cut(s)	256
FaqI	GGGAC	3 cut(s)	538, 1172, 2611
FauI	CCCGC	1 cut(s)	2579
FauNDI	CATATG	1 cut(s)	2472
FbaI	TGATCA	1 cut(s)	1446
Fnu4HI	GCNGC	6 cut(s)	6, 145, 268, 393, 1662, 1820
FokI	GGATG	5 cut(s)	655, 779, 1417, 1828, 2535
FriOI	GRGCYC	1 cut(s)	1622
Fsp4HI	GCNGC	6 cut(s)	6, 145, 268, 393, 1662, 1820
FspBI	CTAG	8 cut(s)	396, 606, 963, 1034, 1496, 1601, 2078, 2540
GlaI	GCGC	1 cut(s)	828
GluI	GCNGC	6 cut(s)	6, 145, 268, 393, 1662, 1820
GsuI	CTGGAG	1 cut(s)	188
HaeIII	GGCC	5 cut(s)	5, 311, 372, 763, 1661
HapII	CCGG	4 cut(s)	373, 379, 454, 764
HgaI	GACGC	1 cut(s)	2313
HhaI	GCGC	1 cut(s)	829
Hin6I	GCGC	1 cut(s)	827
HinP1I	GCGC	1 cut(s)	827
HincII	GTYRAC	1 cut(s)	2567
HindII	GTYRAC	1 cut(s)	2567
HindIII	AAGCTT	3 cut(s)	515, 1699, 1988
HinfI	GANTC	8 cut(s)	382, 506, 871, 1196, 1544, 1597, 1691, 2687
HpaII	CCGG	4 cut(s)	373, 379, 454, 764
HphI	GGTGA	4 cut(s)	850, 1054, 1085, 2155
Hpy166II	GTNNAC	6 cut(s)	1098, 1316, 2146, 2354, 2567, 2658
Hpy188I	TCNGA	6 cut(s)	47, 62, 109, 876, 1177, 2193
Hpy8I	GTNNAC	6 cut(s)	1098, 1316, 2146, 2354, 2567, 2658
Hpy99I	CGWCG	3 cut(s)	172, 2307, 2620
HpyCH4III	ACNGT	6 cut(s)	40, 250, 1460, 2207, 2571, 2602
HpyCH4IV	ACGT	4 cut(s)	671, 1094, 1100, 2225
HpyF10VI	GCNNNNNNNGC	3 cut(s)	664, 1012, 2341
HpyF3I	CTNAG	9 cut(s)	59, 98, 615, 1141, 1257, 1374, 1508, 2259, 2718
HpySE526I	ACGT	4 cut(s)	671, 1094, 1100, 2225
HspAI	GCGC	1 cut(s)	827
Ksp22I	TGATCA	1 cut(s)	1446
Kzo9I	GATC	6 cut(s)	1303, 1423, 1446, 1756, 2093, 2532
LguI	GCTCTTC	1 cut(s)	1610
LmnI	GCTCC	1 cut(s)	477
Lsp1109I	GCAGC	2 cut(s)	156, 1806
LweI	GCATC	5 cut(s)	100, 279, 1599, 1806, 2263
MaeI	CTAG	8 cut(s)	396, 606, 963, 1034, 1496, 1601, 2078, 2540
MaeII	ACGT	4 cut(s)	671, 1094, 1100, 2225
MaeIII	GTNAC	6 cut(s)	559, 652, 772, 883, 1179, 1401
MalI	GATC	6 cut(s)	1305, 1425, 1448, 1758, 2095, 2534
MbiI	CCGCTC	1 cut(s)	1664
MboI	GATC	6 cut(s)	1303, 1423, 1446, 1756, 2093, 2532
MfeI	CAATTG	1 cut(s)	2737
MflI	RGATCY	2 cut(s)	1423, 1756
MhlI	GDGCHC	5 cut(s)	1100, 1458, 1622, 1687, 2671
MluCI	AATT	5 cut(s)	53, 296, 987, 2158, 2737
MlyI	GAGTC	2 cut(s)	515, 1591
MmeI	TCCRAC	3 cut(s)	207, 1545, 1698
Mph1103I	ATGCAT	2 cut(s)	1119, 1680
MroXI	GAANNNNTTC	1 cut(s)	1160
MslI	CAYNNNNRTG	3 cut(s)	1112, 1128, 1169
MspA1I	CMGCKG	1 cut(s)	2140
MspCI	CTTAAG	1 cut(s)	590
MspI	CCGG	4 cut(s)	373, 379, 454, 764
MspR9I	CCNGG	2 cut(s)	22, 503
MunI	CAATTG	1 cut(s)	2737
Mva1269I	GAATGC	2 cut(s)	1117, 2130
MvaI	CCWGG	2 cut(s)	22, 503
MvnI	CGCG	1 cut(s)	829
MwoI	GCNNNNNNNGC	3 cut(s)	664, 1012, 2341
NcoI	CCATGG	2 cut(s)	188, 708
NdeI	CATATG	1 cut(s)	2472
NdeII	GATC	6 cut(s)	1303, 1423, 1446, 1756, 2093, 2532
NlaIV	GGNNCC	2 cut(s)	377, 1188
NsiI	ATGCAT	2 cut(s)	1119, 1680
NspI	RCATGY	2 cut(s)	1899, 2469
PaeR7I	CTCGAG	1 cut(s)	446
PciSI	GCTCTTC	1 cut(s)	1610
PctI	GAATGC	2 cut(s)	1117, 2130
PdmI	GAANNNNTTC	1 cut(s)	1160
PfeI	GAWTC	6 cut(s)	382, 871, 1196, 1544, 1691, 2687
PflFI	GACNNNGTC	1 cut(s)	2111
PflMI	CCANNNNNTGG	3 cut(s)	21, 189, 2351
PfoI	TCCNGGA	1 cut(s)	501
PinAI	ACCGGT	1 cut(s)	453
PkrI	GCNGC	6 cut(s)	7, 146, 269, 394, 1663, 1821
PleI	GAGTC	2 cut(s)	514, 1591
PpsI	GAGTC	2 cut(s)	514, 1591
Ppu21I	YACGTR	1 cut(s)	1095
PpuMI	RGGWCCY	2 cut(s)	102, 1186
PsiI	TTATAA	2 cut(s)	780, 1763
Psp124BI	GAGCTC	1 cut(s)	1622
Psp5II	RGGWCCY	2 cut(s)	102, 1186
Psp6I	CCWGG	2 cut(s)	20, 501
PspGI	CCWGG	2 cut(s)	20, 501
PspN4I	GGNNCC	2 cut(s)	377, 1188
PspPI	GGNCC	6 cut(s)	102, 309, 426, 451, 761, 1186
PspPPI	RGGWCCY	2 cut(s)	102, 1186
PspXI	VCTCGAGB	1 cut(s)	446
PstI	CTGCAG	2 cut(s)	1923, 2337
PstNI	CAGNNNCTG	2 cut(s)	1405, 2050
PsuI	RGATCY	2 cut(s)	1423, 1756
PsyI	GACNNNGTC	1 cut(s)	2111
PvuII	CAGCTG	1 cut(s)	2140
RsaI	GTAC	5 cut(s)	1315, 1352, 2012, 2240, 2544
RsaNI	GTAC	5 cut(s)	1314, 1351, 2011, 2239, 2543
RseI	CAYNNNNRTG	3 cut(s)	1112, 1128, 1169
SacI	GAGCTC	1 cut(s)	1622
SapI	GCTCTTC	1 cut(s)	1610
SatI	GCNGC	6 cut(s)	6, 145, 268, 393, 1662, 1820
Sau3AI	GATC	6 cut(s)	1303, 1423, 1446, 1756, 2093, 2532
Sau96I	GGNCC	6 cut(s)	102, 309, 426, 451, 761, 1186
ScaI	AGTACT	1 cut(s)	1352
SchI	GAGTC	2 cut(s)	515, 1591
ScrFI	CCNGG	2 cut(s)	22, 503
SduI	GDGCHC	5 cut(s)	1100, 1458, 1622, 1687, 2671
SfaNI	GCATC	5 cut(s)	100, 279, 1599, 1806, 2263
SfcI	CTRYAG	3 cut(s)	1459, 1919, 2333
Sfr274I	CTCGAG	1 cut(s)	446
SinI	GGWCC	4 cut(s)	102, 426, 451, 1186
SlaI	CTCGAG	1 cut(s)	446
SmiMI	CAYNNNNRTG	3 cut(s)	1112, 1128, 1169
SmlI	CTYRAG	3 cut(s)	359, 446, 590
SmoI	CTYRAG	3 cut(s)	359, 446, 590
SpeI	ACTAGT	3 cut(s)	605, 962, 2539
Sse9I	AATT	5 cut(s)	53, 296, 987, 2158, 2737
SsiI	CCGC	9 cut(s)	6, 70, 153, 265, 268, 393, 1662, 2586, 2611
SspI	AATATT	3 cut(s)	679, 1741, 1905
SspMI	CTAG	8 cut(s)	396, 606, 963, 1034, 1496, 1601, 2078, 2540
SstI	GAGCTC	1 cut(s)	1622
StyD4I	CCNGG	2 cut(s)	20, 501
StyI	CCWWGG	4 cut(s)	139, 188, 708, 2552
TaaI	ACNGT	6 cut(s)	40, 250, 1460, 2207, 2571, 2602
TaiI	ACGT	4 cut(s)	674, 1097, 1103, 2228
TaqI	TCGA	9 cut(s)	413, 447, 581, 1533, 1838, 1993, 2302, 2385, 2433
TasI	AATT	5 cut(s)	53, 296, 987, 2158, 2737
TatI	WGTACW	4 cut(s)	1313, 1350, 2010, 2542
TauI	GCSGC	4 cut(s)	8, 270, 395, 1664
TfiI	GAWTC	6 cut(s)	382, 871, 1196, 1544, 1691, 2687
TscAI	CASTG	3 cut(s)	1463, 1783, 2342
TseI	GCWGC	2 cut(s)	144, 1819
TspDTI	ATGAA	9 cut(s)	340, 545, 645, 716, 716, 999, 1401, 2031, 2489
TspGWI	ACGGA	1 cut(s)	1845
TspRI	CASTG	3 cut(s)	1463, 1783, 2342
Tth111I	GACNNNGTC	1 cut(s)	2111
Van91I	CCANNNNNTGG	3 cut(s)	21, 189, 2351
Vha464I	CTTAAG	1 cut(s)	590
VneI	GTGCAC	1 cut(s)	1096
VpaK11BI	GGWCC	4 cut(s)	102, 426, 451, 1186
XapI	RAATTY	2 cut(s)	296, 2158
XbaI	TCTAGA	1 cut(s)	1600
XceI	RCATGY	2 cut(s)	1899, 2469
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2679
XhoI	CTCGAG	1 cut(s)	446
XmnI	GAANNNNTTC	1 cut(s)	1160
XspI	CTAG	8 cut(s)	396, 606, 963, 1034, 1496, 1601, 2078, 2540
ZrmI	AGTACT	1 cut(s)	1352
Zsp2I	ATGCAT	2 cut(s)	1119, 1680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.