Rh1DG193600

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005468
Physical Location & Seq
Forward (+)
38380501 .. 38381079
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG193600.1

Sequence Viewer

Length: 579 bp
ATGTTGCTTGAGATTTTCGGCCGGAACCGGAATCTCAATGCCGCTAGAAATCTCTTGTTTTCGATTGAGAAGAGGTCCAATGGGAAGGTTAAGATCGAGGACCGGTTTTTTAATAGCTTGATTAGGAGCTATGGGGAAGCAGGGTTGTTTCAGGAGTCTGTGAAGCTTTTTGGGACGATGAAGTCTATGGGGATATCGGCTTCTGTTGTTACTTTCAATAGTTTGCTTTCGATTTTGCTTAAGAGGGGTAGGACTAGTATGGCTAAGAATGTTTATGATGAAATGCTTGGAATGTATGGAGTTACGCCGGATACGCATACGTTTAATATTTTGATTAGGGGGTTCTGTATGAACTCCATGGTTGATGAGGGTTTTCATTATTTTAAGGAAATGTCAAGGTTGAAATGTGAGCCGGATGTGGTTACTTATAATACGATTGTGGATGGGTTGTGTAGAGCAGGGAAGGTTGGGATTGCGCGAAATGTGGTGAAGGGTATGAGGAAGAGAAGTGGGGAGTTGAATCCGAATGTTGTTACTTATACGACATTGATTAGAGGGTATTGTAAAGAAGCTAGATAA

Protein Analysis

192

Amino Acids

21.71

Weight (kDa)

9.78

Isoelectric Point (pI)

30.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 37 - 76 7.2e-08 PPR repeat family
PPR PF01535 37 - 65 4e-06 PPR repeat
PPR_3 PF13812 56 - 113 4e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 68 - 116 3.3e-14 PPR repeat family
PPR_1 PF12854 100 - 132 6.6e-09 PPR repeat
PPR_2 PF13041 103 - 152 5.3e-17 PPR repeat family
PPR PF01535 107 - 136 1.4e-06 PPR repeat
PPR_3 PF13812 128 - 187 7.1e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 136 - 167 1.7e-12 PPR repeat
PPR_2 PF13041 138 - 189 8.7e-16 PPR repeat family
PPR_1 PF12854 173 - 190 1e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 429
AasI GACNNNNNNGTC 1 cut(s) 181
AccII CGCG 1 cut(s) 478
AciI CCGC 1 cut(s) 42
AcoI YGGCCR 1 cut(s) 19
AflII CTTAAG 1 cut(s) 239
AgeI ACCGGT 1 cut(s) 102
AgsI TTSAA 3 cut(s) 217, 403, 520
AhlI ACTAGT 1 cut(s) 254
AluBI AGCT 4 cut(s) 117, 129, 166, 572
AluI AGCT 4 cut(s) 117, 129, 166, 572
AoxI GGCC 1 cut(s) 19
AsiGI ACCGGT 1 cut(s) 102
AspLEI GCGC 1 cut(s) 478
AspS9I GGNCC 2 cut(s) 75, 100
AsuHPI GGTGA 1 cut(s) 499
AvaII GGWCC 2 cut(s) 75, 100
BccI CCATC 1 cut(s) 437
BciVI GTATCC 1 cut(s) 304
BcuI ACTAGT 1 cut(s) 254
BfaI CTAG 3 cut(s) 45, 255, 573
BfrI CTTAAG 1 cut(s) 239
BfuI GTATCC 1 cut(s) 304
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme18I GGWCC 2 cut(s) 75, 100
BmgT120I GGNCC 2 cut(s) 75, 100
BmiI GGNNCC 1 cut(s) 26
BpuEI CTTGAG 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 357
BsaWI WCCGGW 2 cut(s) 27, 102
Bse118I RCCGGY 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 357
BseGI GGATG 2 cut(s) 421, 448
BseX3I CGGCCG 1 cut(s) 19
Bsh1236I CGCG 1 cut(s) 478
Bsh1285I CGRYCG 1 cut(s) 22
BshFI GGCC 1 cut(s) 21
BshTI ACCGGT 1 cut(s) 102
BsiEI CGRYCG 1 cut(s) 22
BsiSI CCGG 5 cut(s) 22, 28, 103, 308, 413
BslFI GGGAC 1 cut(s) 187
BsmFI GGGAC 1 cut(s) 187
BsnI GGCC 1 cut(s) 21
Bsp143I GATC 1 cut(s) 93
Bsp19I CCATGG 1 cut(s) 357
BspACI CCGC 1 cut(s) 42
BspANI GGCC 1 cut(s) 21
BspFNI CGCG 1 cut(s) 478
BspLI GGNNCC 1 cut(s) 26
BspTI CTTAAG 1 cut(s) 239
BsrFI RCCGGY 1 cut(s) 102
BssAI RCCGGY 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 357
BssMI GATC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 357
Bst6I CTCTTC 2 cut(s) 65, 497
BstAFI CTTAAG 1 cut(s) 239
BstDEI CTNAG 1 cut(s) 264
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 2 cut(s) 421, 448
BstFNI CGCG 1 cut(s) 478
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstMCI CGRYCG 1 cut(s) 22
BstMWI GCNNNNNNNGC 1 cut(s) 313
BstUI CGCG 1 cut(s) 478
BstZI CGGCCG 1 cut(s) 19
BsuI GTATCC 1 cut(s) 304
BsuRI GGCC 1 cut(s) 21
BtgI CCRYGG 1 cut(s) 357
BtsCI GGATG 2 cut(s) 421, 448
CfoI GCGC 1 cut(s) 478
Cfr10I RCCGGY 1 cut(s) 102
Cfr13I GGNCC 2 cut(s) 75, 100
CspAI ACCGGT 1 cut(s) 102
CviAII CATG 1 cut(s) 358
CviJI RGCY 8 cut(s) 21, 117, 129, 166, 200, 263, 412, 572
CviKI_1 RGCY 8 cut(s) 21, 117, 129, 166, 200, 263, 412, 572
DdeI CTNAG 1 cut(s) 264
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
DrdI GACNNNNNNGTC 1 cut(s) 181
DseDI GACNNNNNNGTC 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 19
EagI CGGCCG 1 cut(s) 19
Eam1104I CTCTTC 2 cut(s) 65, 497
EarI CTCTTC 2 cut(s) 65, 497
EclXI CGGCCG 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 357
Eco32I GATATC 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 75, 100
Eco52I CGGCCG 1 cut(s) 19
EcoRV GATATC 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 357
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 1 cut(s) 361
FaqI GGGAC 1 cut(s) 187
FatI CATG 1 cut(s) 357
Fnu4HI GCNGC 1 cut(s) 42
FokI GGATG 2 cut(s) 428, 455
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 3 cut(s) 45, 255, 573
GlaI GCGC 1 cut(s) 477
GluI GCNGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 21
HapII CCGG 5 cut(s) 22, 28, 103, 308, 413
HhaI GCGC 1 cut(s) 478
Hin1II CATG 1 cut(s) 361
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 3 cut(s) 31, 155, 520
HpaII CCGG 5 cut(s) 22, 28, 103, 308, 413
HphI GGTGA 1 cut(s) 499
Hpy188I TCNGA 1 cut(s) 525
Hpy188III TCNNGA 1 cut(s) 152
HpyAV CCTTC 3 cut(s) 79, 457, 484
HpyCH4IV ACGT 1 cut(s) 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 313
HpyF3I CTNAG 1 cut(s) 264
HpySE526I ACGT 1 cut(s) 320
Hsp92II CATG 1 cut(s) 361
HspAI GCGC 1 cut(s) 476
Kzo9I GATC 1 cut(s) 93
LmnI GCTCC 1 cut(s) 126
LpnPI CCDG 8 cut(s) 35, 41, 116, 126, 137, 321, 426, 444
MaeI CTAG 3 cut(s) 45, 255, 573
MaeII ACGT 1 cut(s) 320
MaeIII GTNAC 4 cut(s) 208, 301, 421, 532
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 2 cut(s) 82, 514
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 6 cut(s) 66, 91, 237, 361, 492, 548
MseI TTAA 5 cut(s) 90, 111, 240, 324, 384
MspCI CTTAAG 1 cut(s) 239
MspI CCGG 5 cut(s) 22, 28, 103, 308, 413
MvnI CGCG 1 cut(s) 478
MwoI GCNNNNNNNGC 1 cut(s) 313
NcoI CCATGG 1 cut(s) 357
NdeII GATC 1 cut(s) 93
NlaIII CATG 1 cut(s) 361
NlaIV GGNNCC 1 cut(s) 26
PfeI GAWTC 2 cut(s) 31, 520
PinAI ACCGGT 1 cut(s) 102
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PsiI TTATAA 1 cut(s) 429
PspN4I GGNNCC 1 cut(s) 26
PspPI GGNCC 2 cut(s) 75, 100
SaqAI TTAA 5 cut(s) 90, 111, 240, 324, 384
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 93
Sau96I GGNCC 2 cut(s) 75, 100
SchI GAGTC 1 cut(s) 164
SetI ASST 9 cut(s) 77, 90, 119, 131, 168, 323, 401, 468, 574
SinI GGWCC 2 cut(s) 75, 100
SmlI CTYRAG 2 cut(s) 8, 239
SmoI CTYRAG 2 cut(s) 8, 239
SpeI ACTAGT 1 cut(s) 254
SsiI CCGC 1 cut(s) 42
SspI AATATT 1 cut(s) 328
SspMI CTAG 3 cut(s) 45, 255, 573
StyI CCWWGG 1 cut(s) 357
TaiI ACGT 1 cut(s) 323
TaqI TCGA 3 cut(s) 62, 96, 230
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 2 cut(s) 31, 520
Tru1I TTAA 5 cut(s) 90, 111, 240, 324, 384
Tru9I TTAA 5 cut(s) 90, 111, 240, 324, 384
TspDTI ATGAA 4 cut(s) 194, 294, 365, 365
Vha464I CTTAAG 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 75, 100
XspI CTAG 3 cut(s) 45, 255, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.