Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004698

Physical Location & Seq

Genomic Coordinates Reverse (-)

24643039 .. 24650344

Gene Structure 7306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G215700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGTCCAGCTCTTCGCCAACACGTCAGCCTCAGACATTCGGATTGCCCTGGCCCGATCTCAACCACGGCTTGCTCTACAACGACGTCGTTCGAGCCTCCGATTCTGAACTGACACTGATCGAGTTCTACTCGAGCAAGTATAAGAACTCAGCTCCTCTACAAGGTTGGTTGCAGAGAATTCGGAACGGCCAGATAACAGTTGATGGCGAAGTTGTTAGAGATCCCAGTACGATCCTCAGGGTCGGTTCGGAATTGGTCTATCATAGGCTTCCGTGGAGAGAGCCTGATGCGCCATACTTGCTGGGGGTTCTATATGAGGATGATGATATGATTGCTCTAAATAAGCCTTCTGGCCTGCAAGTTTTACCTGGGGGTCTTTTCCAGCAACGGACAGTTCTCACACAGCTCCTATGTTGGGCAACAAATAAGATCTCTCCCTTATCATGCCAAGAACCACATCCTGTTCCTGTTCATCGCTTAGGAAGAGGCACTTCAGGAATATTACTCTGTGCAAAGACGAAGCATGCCAAAACTCAACTTGCAGCATACTTTGCTGACGGGACATCTAATATTGGAGATAACAGTAATACCTCCATGGAGGCGCATGCAGTGAGGAAAATCTCAAAGATATACCGGGCACTAGTGACTGGGATACTCTGTGAAGATAAGGTAATTGTCAAACAGCCAATTGGAGTGGTGCGATATCCTGGTGTGGCTAAAGGGCTGTATGTTGCTTCTCCCACAGGAAAACCAGCTCTGAGTAAAGTTGAAGTTCTTGAGAGAGGAATTCATAAAAACCAAACACTGGTCCAGGTTGAGATTCAGTCAGGAAGGCCACACCAAATTCGTATCCATCTTTCTTACATAGGACATCCTTTGTTAGGAGATCCTCTTTATGTTCTTGGTGGACAACCAAAGTGCTTAGATTCTGACTTTGTAGATGAGAGTTTTGCAGATGATGGAGGATTCCTGAGGCCTACAAAACCTGTTCCAGGAGATTGTGGCTACAACTTGCATGCCCATCAAGTGATTCTCTCTCACCCATCATCCAATGAGGTAATCAAAGTTACAGCACCACTTCCGGCTATTCTCCGAACTCGGCAAGAAACCGAGGAACTTATTAGCACTACTACCAATATCAAGAATGCTGCAGATGGAAAGTGCTCATTCAACAGGTTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000455 GO:0001522 GO:0003674 GO:0003824 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016853 GO:0016866 GO:0022613 GO:0031118 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

395

Amino Acids

43.33

Weight (kDa)

8.57

Isoelectric Point (pI)

43.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52260 AT3G52260 AT3G52260 AT3G52260
fragaria_vesca	FvH4_7g19860
malus_domestica	MD07G1176900.v1.1
prunus_persica	Prupe.2G215700_v2.0.a1 Prupe.2G215700_v2.0.a1
pyrus_communis	pycom07g17100
rosa_chinensis	RchiOBHm_Chr1g0363851 RchiOBHm_Chr2g0104231 RchiOBHm_Chr2g0110391 RchiOBHm_Chr5g0046841
rosa_laevigata	RLG00000027541 RLG00000030372
rosa_multiflora	Rmu_sc0002474.1_g000014
rosa_roxburghii	Rroxscaffold_4G00292920
rosa_rugosa	Rorug01G0309800 Rorug01G0309900
rosa_samantha	Rh1AG318300 Rh1BG281500 Rh1CG297900 Rh1DG312800 Rh3CG345100 Rh4AG103100 Rh4CG111400 Rh5AG515700 Rh5BG320500 Rh5DG331200
rosa_wichuraiana	Rw1G028250 Rw5G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	87
AccB7I	CCANNNNNTGG	1 cut(s)	805
AclWI	GGATC	3 cut(s)	215, 226, 881
AcoI	YGGCCR	1 cut(s)	187
AcsI	RAATTY	3 cut(s)	177, 786, 843
AcuI	CTGAAG	1 cut(s)	477
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	5 cut(s)	161, 415, 805, 881, 992
AflIII	ACRYGT	1 cut(s)	20
AgsI	TTSAA	2 cut(s)	770, 1171
AhlI	ACTAGT	1 cut(s)	640
AjiI	CACGTC	1 cut(s)	23
AjnI	CCWGG	5 cut(s)	47, 367, 706, 810, 991
AluBI	AGCT	4 cut(s)	9, 152, 406, 755
AluI	AGCT	4 cut(s)	9, 152, 406, 755
Alw21I	GWGCWC	1 cut(s)	1166
AlwI	GGATC	3 cut(s)	215, 226, 881
Ama87I	CYCGRG	1 cut(s)	130
AoxI	GGCC	5 cut(s)	50, 187, 352, 833, 974
ApeKI	GCWGC	2 cut(s)	542, 1148
ApoI	RAATTY	3 cut(s)	177, 786, 843
AspLEI	GCGC	2 cut(s)	292, 604
AspS9I	GGNCC	2 cut(s)	51, 808
AsuC2I	CCSGG	1 cut(s)	635
AsuHPI	GGTGA	1 cut(s)	1031
AvaI	CYCGRG	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	808
AxyI	CCTNAGG	2 cut(s)	236, 971
BaeGI	GKGCMC	1 cut(s)	640
Bbv12I	GWGCWC	1 cut(s)	1166
BbvI	GCAGC	2 cut(s)	554, 1135
BccI	CCATC	6 cut(s)	197, 861, 953, 1029, 1051, 1148
BceAI	ACGGC	2 cut(s)	82, 202
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BciT130I	CCWGG	5 cut(s)	49, 369, 708, 812, 993
BciVI	GTATCC	2 cut(s)	645, 860
BcnI	CCSGG	1 cut(s)	635
BcuI	ACTAGT	1 cut(s)	640
BfaI	CTAG	1 cut(s)	641
BfmI	CTRYAG	1 cut(s)	1149
BfuI	GTATCC	2 cut(s)	645, 860
BglII	AGATCT	1 cut(s)	429
BisI	GCNGC	2 cut(s)	543, 1149
BlsI	GCNGC	2 cut(s)	544, 1150
Bme1390I	CCNGG	6 cut(s)	49, 369, 635, 708, 812, 993
Bme18I	GGWCC	1 cut(s)	808
BmeT110I	CYCGRG	1 cut(s)	130
BmgBI	CACGTC	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	51, 808
BmrFI	CCNGG	6 cut(s)	49, 369, 635, 708, 812, 993
BmrI	ACTGGG	2 cut(s)	219, 657
BmsI	GCATC	1 cut(s)	277
BmuI	ACTGGG	2 cut(s)	219, 657
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
Bpu10I	CCTNAGC	1 cut(s)	478
BpuEI	CTTGAG	1 cut(s)	797
BpuMI	CCSGG	1 cut(s)	635
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	6 cut(s)	47, 64, 272, 368, 594, 1110
Bsc4I	CCNNNNNNNGG	5 cut(s)	161, 415, 805, 881, 992
Bse1I	ACTGG	3 cut(s)	225, 652, 810
Bse21I	CCTNAGG	2 cut(s)	236, 971
BseBI	CCWGG	5 cut(s)	49, 369, 708, 812, 993
BseDI	CCNNGG	6 cut(s)	47, 64, 272, 368, 594, 1110
BseGI	GGATG	4 cut(s)	325, 457, 871, 1046
BseLI	CCNNNNNNNGG	5 cut(s)	161, 415, 805, 881, 992
BseMII	CTCAG	5 cut(s)	44, 162, 250, 749, 962
BseNI	ACTGG	3 cut(s)	225, 652, 810
BseRI	GAGGAG	1 cut(s)	144
BseSI	GKGCMC	1 cut(s)	640
BseXI	GCAGC	2 cut(s)	554, 1135
BseYI	CCCAGC	1 cut(s)	301
BshFI	GGCC	5 cut(s)	52, 189, 354, 835, 976
BsiHKAI	GWGCWC	1 cut(s)	1166
BsiHKCI	CYCGRG	1 cut(s)	130
BsiSI	CCGG	2 cut(s)	634, 1082
BslFI	GGGAC	1 cut(s)	574
BslI	CCNNNNNNNGG	5 cut(s)	161, 415, 805, 881, 992
BsmFI	GGGAC	1 cut(s)	574
BsmI	GAATGC	1 cut(s)	1150
BsnI	GGCC	5 cut(s)	52, 189, 354, 835, 976
BsoBI	CYCGRG	1 cut(s)	130
Bsp1286I	GDGCHC	2 cut(s)	640, 1166
Bsp143I	GATC	6 cut(s)	55, 117, 220, 231, 429, 886
Bsp19I	CCATGG	1 cut(s)	594
BspANI	GGCC	5 cut(s)	52, 189, 354, 835, 976
BspCNI	CTCAG	5 cut(s)	43, 161, 249, 750, 963
BspMAI	CTGCAG	1 cut(s)	1153
BspPI	GGATC	3 cut(s)	215, 226, 881
BspQI	GCTCTTC	1 cut(s)	16
BsrI	ACTGG	3 cut(s)	225, 652, 810
BssECI	CCNNGG	6 cut(s)	47, 64, 272, 368, 594, 1110
BssMI	GATC	6 cut(s)	55, 117, 220, 231, 429, 886
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	594
Bst2UI	CCWGG	5 cut(s)	49, 369, 708, 812, 993
Bst4CI	ACNGT	3 cut(s)	199, 394, 584
Bst6I	CTCTTC	2 cut(s)	16, 478
BstACI	GRCGYC	1 cut(s)	84
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstC8I	GCNNGC	5 cut(s)	71, 356, 525, 606, 1017
BstDEI	CTNAG	7 cut(s)	30, 148, 236, 478, 758, 922, 971
BstDSI	CCRYGG	3 cut(s)	64, 272, 594
BstENI	CCTNNNNNAGG	3 cut(s)	159, 879, 990
BstF5I	GGATG	4 cut(s)	325, 457, 871, 1046
BstHHI	GCGC	2 cut(s)	292, 604
BstKTI	GATC	6 cut(s)	58, 120, 223, 234, 432, 889
BstMBI	GATC	6 cut(s)	55, 117, 220, 231, 429, 886
BstMWI	GCNNNNNNNGC	3 cut(s)	289, 298, 551
BstNI	CCWGG	5 cut(s)	49, 369, 708, 812, 993
BstNSI	RCATGY	3 cut(s)	527, 608, 1019
BstSCI	CCNGG	6 cut(s)	47, 367, 633, 706, 810, 991
BstSFI	CTRYAG	1 cut(s)	1149
BstSLI	GKGCMC	1 cut(s)	640
BstV1I	GCAGC	2 cut(s)	554, 1135
BstX2I	RGATCY	3 cut(s)	220, 429, 886
BstYI	RGATCY	3 cut(s)	220, 429, 886
Bsu36I	CCTNAGG	2 cut(s)	236, 971
BsuI	GTATCC	2 cut(s)	645, 860
BsuRI	GGCC	5 cut(s)	52, 189, 354, 835, 976
BtgI	CCRYGG	3 cut(s)	64, 272, 594
BtgZI	GCGATG	1 cut(s)	458
BtrI	CACGTC	1 cut(s)	23
BtsCI	GGATG	4 cut(s)	325, 457, 871, 1046
BtsI	GCAGTG	1 cut(s)	615
BtsIMutI	CAGTG	3 cut(s)	113, 615, 803
Cac8I	GCNNGC	5 cut(s)	71, 356, 525, 606, 1017
CfoI	GCGC	2 cut(s)	292, 604
Cfr13I	GGNCC	2 cut(s)	51, 808
Csp6I	GTAC	1 cut(s)	228
CspCI	CAANNNNNGTGG	2 cut(s)	675, 710
CviAII	CATG	5 cut(s)	444, 524, 595, 605, 1016
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	7 cut(s)	30, 148, 236, 478, 758, 922, 971
DpnI	GATC	6 cut(s)	57, 119, 222, 233, 431, 888
DpnII	GATC	6 cut(s)	55, 117, 220, 231, 429, 886
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	2 cut(s)	16, 478
EarI	CTCTTC	2 cut(s)	16, 478
Eco130I	CCWWGG	1 cut(s)	594
Eco147I	AGGCCT	1 cut(s)	976
Eco32I	GATATC	1 cut(s)	704
Eco47I	GGWCC	1 cut(s)	808
Eco57I	CTGAAG	1 cut(s)	477
Eco81I	CCTNAGG	2 cut(s)	236, 971
Eco88I	CYCGRG	1 cut(s)	130
EcoNI	CCTNNNNNAGG	3 cut(s)	159, 879, 990
EcoRI	GAATTC	2 cut(s)	177, 786
EcoRII	CCWGG	5 cut(s)	47, 367, 706, 810, 991
EcoRV	GATATC	1 cut(s)	704
EcoT14I	CCWWGG	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	5 cut(s)	447, 527, 598, 608, 1019
FalI	AAGNNNNNCTT	2 cut(s)	475, 507
FaqI	GGGAC	1 cut(s)	574
FatI	CATG	5 cut(s)	443, 523, 594, 604, 1015
Fnu4HI	GCNGC	2 cut(s)	543, 1149
FokI	GGATG	4 cut(s)	332, 444, 858, 1033
Fsp4HI	GCNGC	2 cut(s)	543, 1149
FspBI	CTAG	1 cut(s)	641
GlaI	GCGC	2 cut(s)	291, 603
GluI	GCNGC	2 cut(s)	543, 1149
GsaI	CCCAGC	1 cut(s)	305
HaeIII	GGCC	5 cut(s)	52, 189, 354, 835, 976
HapII	CCGG	2 cut(s)	634, 1082
HhaI	GCGC	2 cut(s)	292, 604
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	5 cut(s)	447, 527, 598, 608, 1019
Hin6I	GCGC	2 cut(s)	290, 602
HinP1I	GCGC	2 cut(s)	290, 602
HinfI	GANTC	5 cut(s)	101, 820, 926, 966, 1030
HpaII	CCGG	2 cut(s)	634, 1082
HphI	GGTGA	1 cut(s)	1031
Hpy166II	GTNNAC	1 cut(s)	908
Hpy188I	TCNGA	9 cut(s)	33, 41, 100, 106, 183, 250, 759, 931, 1094
Hpy188III	TCNNGA	5 cut(s)	495, 776, 828, 970, 1141
Hpy8I	GTNNAC	1 cut(s)	908
Hpy99I	CGWCG	2 cut(s)	86, 89
HpyAV	CCTTC	2 cut(s)	357, 825
HpyCH4III	ACNGT	3 cut(s)	199, 394, 584
HpyCH4IV	ACGT	2 cut(s)	22, 84
HpyCH4V	TGCA	8 cut(s)	172, 358, 512, 542, 608, 953, 1015, 1151
HpyF10VI	GCNNNNNNNGC	3 cut(s)	289, 298, 551
HpyF3I	CTNAG	7 cut(s)	30, 148, 236, 478, 758, 922, 971
HpySE526I	ACGT	2 cut(s)	22, 84
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	5 cut(s)	447, 527, 598, 608, 1019
HspAI	GCGC	2 cut(s)	290, 602
Kzo9I	GATC	6 cut(s)	55, 117, 220, 231, 429, 886
LguI	GCTCTTC	1 cut(s)	16
LmnI	GCTCC	2 cut(s)	157, 411
Lsp1109I	GCAGC	2 cut(s)	554, 1135
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	641
MaeII	ACGT	2 cut(s)	22, 84
MaeIII	GTNAC	2 cut(s)	643, 1066
MalI	GATC	6 cut(s)	57, 119, 222, 233, 431, 888
MboI	GATC	6 cut(s)	55, 117, 220, 231, 429, 886
MboII	GAAGA	3 cut(s)	3, 495, 674
MfeI	CAATTG	1 cut(s)	687
MflI	RGATCY	3 cut(s)	220, 429, 886
MhlI	GDGCHC	2 cut(s)	640, 1166
MluCI	AATT	6 cut(s)	177, 251, 672, 687, 786, 843
MspI	CCGG	2 cut(s)	634, 1082
MspR9I	CCNGG	6 cut(s)	49, 369, 635, 708, 812, 993
MunI	CAATTG	1 cut(s)	687
Mva1269I	GAATGC	1 cut(s)	1150
MvaI	CCWGG	5 cut(s)	49, 369, 708, 812, 993
MwoI	GCNNNNNNNGC	3 cut(s)	289, 298, 551
NciI	CCSGG	1 cut(s)	635
NcoI	CCATGG	1 cut(s)	594
NdeII	GATC	6 cut(s)	55, 117, 220, 231, 429, 886
NlaIII	CATG	5 cut(s)	447, 527, 598, 608, 1019
NmeAIII	GCCGAG	1 cut(s)	1078
NmuCI	GTSAC	1 cut(s)	643
NspI	RCATGY	3 cut(s)	527, 608, 1019
PaeI	GCATGC	3 cut(s)	527, 608, 1019
PaeR7I	CTCGAG	1 cut(s)	130
PceI	AGGCCT	1 cut(s)	976
PciSI	GCTCTTC	1 cut(s)	16
PctI	GAATGC	1 cut(s)	1150
PfeI	GAWTC	5 cut(s)	101, 820, 926, 966, 1030
PflMI	CCANNNNNTGG	1 cut(s)	805
PfoI	TCCNGGA	1 cut(s)	991
PkrI	GCNGC	2 cut(s)	544, 1150
Psp6I	CCWGG	5 cut(s)	47, 367, 706, 810, 991
PspFI	CCCAGC	1 cut(s)	301
PspGI	CCWGG	5 cut(s)	47, 367, 706, 810, 991
PspPI	GGNCC	2 cut(s)	51, 808
PspXI	VCTCGAGB	1 cut(s)	130
PstI	CTGCAG	1 cut(s)	1153
PsuI	RGATCY	3 cut(s)	220, 429, 886
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
SapI	GCTCTTC	1 cut(s)	16
SatI	GCNGC	2 cut(s)	543, 1149
Sau3AI	GATC	6 cut(s)	55, 117, 220, 231, 429, 886
Sau96I	GGNCC	2 cut(s)	51, 808
ScrFI	CCNGG	6 cut(s)	49, 369, 635, 708, 812, 993
SduI	GDGCHC	2 cut(s)	640, 1166
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	1 cut(s)	1149
Sfr274I	CTCGAG	1 cut(s)	130
SinI	GGWCC	1 cut(s)	808
SlaI	CTCGAG	1 cut(s)	130
SmlI	CTYRAG	2 cut(s)	130, 776
SmoI	CTYRAG	2 cut(s)	130, 776
SpeI	ACTAGT	1 cut(s)	640
SphI	GCATGC	3 cut(s)	527, 608, 1019
Sse9I	AATT	6 cut(s)	177, 251, 672, 687, 786, 843
SseBI	AGGCCT	1 cut(s)	976
SspI	AATATT	2 cut(s)	501, 571
SspMI	CTAG	1 cut(s)	641
StuI	AGGCCT	1 cut(s)	976
StyD4I	CCNGG	6 cut(s)	47, 367, 633, 706, 810, 991
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	3 cut(s)	199, 394, 584
TaiI	ACGT	2 cut(s)	25, 87
TaqI	TCGA	3 cut(s)	91, 120, 131
TasI	AATT	6 cut(s)	177, 251, 672, 687, 786, 843
TfiI	GAWTC	5 cut(s)	101, 820, 926, 966, 1030
TscAI	CASTG	3 cut(s)	120, 615, 810
TseFI	GTSAC	1 cut(s)	643
TseI	GCWGC	2 cut(s)	542, 1148
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	2 cut(s)	461, 779
TspGWI	ACGGA	2 cut(s)	261, 403
TspRI	CASTG	3 cut(s)	120, 615, 810
Van91I	CCANNNNNTGG	1 cut(s)	805
VpaK11BI	GGWCC	1 cut(s)	808
XagI	CCTNNNNNAGG	3 cut(s)	159, 879, 990
XapI	RAATTY	3 cut(s)	177, 786, 843
XceI	RCATGY	3 cut(s)	527, 608, 1019
XhoI	CTCGAG	1 cut(s)	130
XspI	CTAG	1 cut(s)	641
ZraI	GACGTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.