Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004698

Physical Location & Seq

Genomic Coordinates Reverse (-)

42897756 .. 42907196

Gene Structure 9441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG320500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCTTGCTTTGAATAAGCCAGGCGGGCTACAAGTTTTACCTGGAGGTCTTTTCCAGCAACATATAGTTCTAACACAGCTCCTATGGCGGCAAACTCAGAAGATCCATCACTTAGCATGCCAAAAATCACATCTTGTTCATGTTCATCGCCTAGGAAGGGGCACTTCAGACCAGCTTTGCGATGGAATGATTTTTAATCACAAGCTGCCTGGATGTGTTGATTGCTCGGGACTTGTGCACTACCAGTACAATGCTGATGTACAAAACCCGGCTCTAGCCATTTCAGCCTTTGGAAGCGCAAGTGCTGGAACTGTATCAGTTCCTCCCACTTTGTTCACCACTAATATTGATGATAATGTCCTTGCTCTGTCATTGAAGACTGATGTAGCCACCGTTCAAAAACTCAAAGCTGGACTTGCTCTGAAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

143

Amino Acids

15.35

Weight (kDa)

9.02

Isoelectric Point (pI)

29.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52260 AT3G52260 AT3G52260 AT3G52260
fragaria_vesca	FvH4_7g19860
malus_domestica	MD07G1176900.v1.1
prunus_persica	Prupe.2G215700_v2.0.a1 Prupe.2G215700_v2.0.a1
pyrus_communis	pycom07g17100
rosa_chinensis	RchiOBHm_Chr1g0363851 RchiOBHm_Chr2g0104231 RchiOBHm_Chr2g0110391 RchiOBHm_Chr5g0046841
rosa_laevigata	RLG00000027541 RLG00000030372
rosa_multiflora	Rmu_sc0002474.1_g000014
rosa_roxburghii	Rroxscaffold_4G00292920
rosa_rugosa	Rorug01G0309800 Rorug01G0309900
rosa_samantha	Rh1AG318300 Rh1BG281500 Rh1CG297900 Rh1DG312800 Rh3CG345100 Rh4AG103100 Rh4CG111400 Rh5AG515700 Rh5BG320500 Rh5DG331200
rosa_wichuraiana	Rw1G028250 Rw5G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	24, 88
AclWI	GGATC	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	2 cut(s)	248, 261
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	3 cut(s)	13, 376, 398
AjnI	CCWGG	3 cut(s)	19, 40, 208
AluBI	AGCT	4 cut(s)	79, 175, 205, 410
AluI	AGCT	4 cut(s)	79, 175, 205, 410
Alw21I	GWGCWC	1 cut(s)	240
Alw44I	GTGCAC	1 cut(s)	236
AlwI	GGATC	1 cut(s)	97
Ama87I	CYCGRG	1 cut(s)	226
ApaLI	GTGCAC	1 cut(s)	236
ApeKI	GCWGC	1 cut(s)	205
AspA2I	CCTAGG	1 cut(s)	151
AspLEI	GCGC	1 cut(s)	299
AsuC2I	CCSGG	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	328
AvaI	CYCGRG	1 cut(s)	226
AvrII	CCTAGG	1 cut(s)	151
BaeGI	GKGCMC	2 cut(s)	164, 240
BbsI	GAAGAC	1 cut(s)	383
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	1 cut(s)	192
BccI	CCATC	2 cut(s)	114, 176
BciT130I	CCWGG	3 cut(s)	21, 42, 210
BcnI	CCSGG	1 cut(s)	269
BfaI	CTAG	2 cut(s)	152, 275
BglI	GCCNNNNNGGC	1 cut(s)	25
BisI	GCNGC	2 cut(s)	89, 206
BlnI	CCTAGG	1 cut(s)	151
BlsI	GCNGC	2 cut(s)	90, 207
Bme1390I	CCNGG	4 cut(s)	21, 42, 210, 269
BmeT110I	CYCGRG	1 cut(s)	226
BmrFI	CCNGG	4 cut(s)	21, 42, 210, 269
BpiI	GAAGAC	1 cut(s)	383
BpmI	CTGGAG	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	244
BseBI	CCWGG	3 cut(s)	21, 42, 210
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	218
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	1 cut(s)	244
BseSI	GKGCMC	2 cut(s)	164, 240
BseXI	GCAGC	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	240
BsiHKCI	CYCGRG	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	269
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	243
BsoBI	CYCGRG	1 cut(s)	226
Bsp1286I	GDGCHC	2 cut(s)	164, 240
Bsp1407I	TGTACA	1 cut(s)	259
Bsp143I	GATC	1 cut(s)	102
BspACI	CCGC	2 cut(s)	24, 88
BspCNI	CTCAG	1 cut(s)	109
BspPI	GGATC	1 cut(s)	97
BsrGI	TGTACA	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	151
Bst2UI	CCWGG	3 cut(s)	21, 42, 210
Bst4CI	ACNGT	2 cut(s)	313, 394
BstAUI	TGTACA	1 cut(s)	259
BstC8I	GCNNGC	3 cut(s)	6, 26, 118
BstDEI	CTNAG	2 cut(s)	96, 112
BstF5I	GGATG	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	299
BstKTI	GATC	1 cut(s)	105
BstMBI	GATC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 85, 284, 416
BstNI	CCWGG	3 cut(s)	21, 42, 210
BstNSI	RCATGY	1 cut(s)	120
BstSCI	CCNGG	4 cut(s)	19, 40, 208, 267
BstSLI	GKGCMC	2 cut(s)	164, 240
BstV1I	GCAGC	1 cut(s)	192
BstV2I	GAAGAC	1 cut(s)	383
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BtgZI	GCGATG	2 cut(s)	131, 195
BtsCI	GGATG	1 cut(s)	218
Cac8I	GCNNGC	3 cut(s)	6, 26, 118
CfoI	GCGC	1 cut(s)	299
Csp6I	GTAC	2 cut(s)	247, 260
CspCI	CAANNNNNGTGG	2 cut(s)	328, 363
CviAII	CATG	2 cut(s)	117, 140
CviQI	GTAC	2 cut(s)	247, 260
DdeI	CTNAG	2 cut(s)	96, 112
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	226
EcoRII	CCWGG	3 cut(s)	19, 40, 208
EcoT14I	CCWWGG	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	2 cut(s)	120, 143
FaiI	YATR	6 cut(s)	63, 65, 85, 118, 141, 430
FalI	AAGNNNNNCTT	4 cut(s)	148, 180, 399, 431
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	2 cut(s)	116, 139
FauI	CCCGC	1 cut(s)	17
Fnu4HI	GCNGC	2 cut(s)	89, 206
FokI	GGATG	1 cut(s)	225
Fsp4HI	GCNGC	2 cut(s)	89, 206
FspBI	CTAG	2 cut(s)	152, 275
GlaI	GCGC	1 cut(s)	298
GluI	GCNGC	2 cut(s)	89, 206
GsuI	CTGGAG	1 cut(s)	63
HapII	CCGG	1 cut(s)	269
HhaI	GCGC	1 cut(s)	299
Hin1II	CATG	2 cut(s)	120, 143
Hin6I	GCGC	1 cut(s)	297
HinP1I	GCGC	1 cut(s)	297
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	2 cut(s)	238, 336
Hpy188I	TCNGA	3 cut(s)	99, 169, 423
Hpy188III	TCNNGA	1 cut(s)	228
Hpy8I	GTNNAC	2 cut(s)	238, 336
HpyAV	CCTTC	1 cut(s)	150
HpyCH4III	ACNGT	2 cut(s)	313, 394
HpyCH4V	TGCA	1 cut(s)	238
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 85, 284, 416
HpyF3I	CTNAG	2 cut(s)	96, 112
Hsp92II	CATG	2 cut(s)	120, 143
HspAI	GCGC	1 cut(s)	297
Kzo9I	GATC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	84
Lsp1109I	GCAGC	1 cut(s)	192
MaeI	CTAG	2 cut(s)	152, 275
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MboII	GAAGA	2 cut(s)	112, 388
MflI	RGATCY	1 cut(s)	102
MhlI	GDGCHC	2 cut(s)	164, 240
MnlI	CCTC	2 cut(s)	38, 333
MseI	TTAA	1 cut(s)	195
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	4 cut(s)	21, 42, 210, 269
MvaI	CCWGG	3 cut(s)	21, 42, 210
MwoI	GCNNNNNNNGC	4 cut(s)	25, 85, 284, 416
NciI	CCSGG	1 cut(s)	269
NdeII	GATC	1 cut(s)	102
NlaIII	CATG	2 cut(s)	120, 143
NspI	RCATGY	1 cut(s)	120
PaeI	GCATGC	1 cut(s)	120
PkrI	GCNGC	2 cut(s)	90, 207
Psp6I	CCWGG	3 cut(s)	19, 40, 208
PspGI	CCWGG	3 cut(s)	19, 40, 208
PsrI	GAACNNNNNNTAC	2 cut(s)	378, 410
PsuI	RGATCY	1 cut(s)	102
RsaI	GTAC	2 cut(s)	248, 261
RsaNI	GTAC	2 cut(s)	247, 260
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	2 cut(s)	89, 206
Sau3AI	GATC	1 cut(s)	102
ScrFI	CCNGG	4 cut(s)	21, 42, 210, 269
SduI	GDGCHC	2 cut(s)	164, 240
SetI	ASST	6 cut(s)	43, 49, 81, 177, 207, 412
SphI	GCATGC	1 cut(s)	120
SsiI	CCGC	2 cut(s)	24, 88
SspI	AATATT	1 cut(s)	346
SspMI	CTAG	2 cut(s)	152, 275
StyD4I	CCNGG	4 cut(s)	19, 40, 208, 267
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	2 cut(s)	313, 394
TatI	WGTACW	2 cut(s)	246, 259
TauI	GCSGC	1 cut(s)	91
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TseI	GCWGC	1 cut(s)	205
TspDTI	ATGAA	2 cut(s)	128, 134
VneI	GTGCAC	1 cut(s)	236
XceI	RCATGY	1 cut(s)	120
XcmI	CCANNNNNNNNNTGG	1 cut(s)	179
XmaJI	CCTAGG	1 cut(s)	151
XspI	CTAG	2 cut(s)	152, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.