Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004698

Physical Location & Seq

Genomic Coordinates Reverse (-)

19660048 .. 19662545

Gene Structure 2498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g17100.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTCTAGCTCCTCGCGAGTATGTCAGCCTCAGACGTTTGGATTGCCGTGGCCCGATCTCAACGACGGATTGTTCTACAACGACGTCGTTCGAGCCTCCGATTCCGAACTGACTCTGATCGAGTTCTACTCTAGCAAGTACAAGAATTCAGCTCCATTGCAAGGTTGGTTGCAGAGAATTCGGAGCGGACAGATAACAGTTGATAGAGAAGTTGTTAGAGATCCTGATACGATCCTCAGGGTTGGTTCGAAATTGGCATATCATAGACTTCCATGGAGAGAGCCCGATGCACCATACTTGCTCGAGGTTCTGTATGAGGATGATGATATGATTGCTCTAAATAAGCCTTCTGGGCTACAAGTTTTACCTCAAGGTCTTTTCCAGCAACGAACAGTTCTCACACAGCTCCTATGGCGGGCAACACAGAAGATTTCTCACTTATCGTGCCAACAACCACATCCTGTTCCTGTCCATCGCTTAGGAAGAGGAACTTCAGGAATATTACTCTGTGCAAAGACCAAGCATGCCAAAACTCAGCTTGCAGCATACTTCGCTAACGGGACATCTAATATTGGAGATGGCAGATCCACAGTAATGCTGACGTGGAGCCTCGTACAGAGAGGAAAATATCAAAGATTTACCGGGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000455 GO:0001522 GO:0003674 GO:0003824 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016853 GO:0016866 GO:0022613 GO:0031118 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

217

Amino Acids

24.44

Weight (kDa)

9.45

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52260 AT3G52260 AT3G52260 AT3G52260
fragaria_vesca	FvH4_7g19860
malus_domestica	MD07G1176900.v1.1
prunus_persica	Prupe.2G215700_v2.0.a1 Prupe.2G215700_v2.0.a1
pyrus_communis	pycom07g17100
rosa_chinensis	RchiOBHm_Chr1g0363851 RchiOBHm_Chr2g0104231 RchiOBHm_Chr2g0110391 RchiOBHm_Chr5g0046841
rosa_laevigata	RLG00000027541 RLG00000030372
rosa_multiflora	Rmu_sc0002474.1_g000014
rosa_roxburghii	Rroxscaffold_4G00292920
rosa_rugosa	Rorug01G0309800 Rorug01G0309900
rosa_samantha	Rh1AG318300 Rh1BG281500 Rh1CG297900 Rh1DG312800 Rh3CG345100 Rh4AG103100 Rh4CG111400 Rh5AG515700 Rh5BG320500 Rh5DG331200
rosa_wichuraiana	Rw1G028250 Rw5G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	87
AccBSI	CCGCTC	1 cut(s)	186
AccII	CGCG	1 cut(s)	16
AciI	CCGC	2 cut(s)	186, 415
AclWI	GGATC	3 cut(s)	215, 226, 579
AcsI	RAATTY	2 cut(s)	145, 177
AcuI	CTGAAG	1 cut(s)	477
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	2 cut(s)	140, 615
AfiI	CCNNNNNNNGG	2 cut(s)	161, 415
AjiI	CACGTC	1 cut(s)	603
AluBI	AGCT	4 cut(s)	9, 152, 406, 538
AluI	AGCT	4 cut(s)	9, 152, 406, 538
AlwI	GGATC	3 cut(s)	215, 226, 579
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	1 cut(s)	50
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	2 cut(s)	145, 177
AspS9I	GGNCC	1 cut(s)	51
AsuC2I	CCSGG	1 cut(s)	643
AsuII	TTCGAA	1 cut(s)	248
AvaI	CYCGRG	1 cut(s)	302
AxyI	CCTNAGG	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	648
BanII	GRGCYC	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	554
BccI	CCATC	2 cut(s)	480, 572
BceAI	ACGGC	1 cut(s)	31
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BcnI	CCSGG	1 cut(s)	643
BfaI	CTAG	3 cut(s)	6, 132, 649
BglI	GCCNNNNNGGC	1 cut(s)	352
BisI	GCNGC	1 cut(s)	543
BlsI	GCNGC	1 cut(s)	544
Bme1390I	CCNGG	1 cut(s)	643
BmeT110I	CYCGRG	1 cut(s)	302
BmgBI	CACGTC	1 cut(s)	603
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	608
BmrFI	CCNGG	1 cut(s)	643
BmsI	GCATC	1 cut(s)	277
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
Bpu10I	CCTNAGC	1 cut(s)	478
Bpu14I	TTCGAA	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	354
BpuMI	CCSGG	1 cut(s)	643
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	47, 272
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 415
Bse21I	CCTNAGG	1 cut(s)	236
Bse3DI	GCAATG	1 cut(s)	155
BseDI	CCNNGG	2 cut(s)	47, 272
BseGI	GGATG	2 cut(s)	325, 457
BseLI	CCNNNNNNNGG	2 cut(s)	161, 415
BseMI	GCAATG	1 cut(s)	155
BseMII	CTCAG	3 cut(s)	44, 250, 548
BseSI	GKGCMC	1 cut(s)	648
BseXI	GCAGC	1 cut(s)	554
Bsh1236I	CGCG	1 cut(s)	16
BshFI	GGCC	1 cut(s)	52
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	642
BslFI	GGGAC	1 cut(s)	574
BslI	CCNNNNNNNGG	2 cut(s)	161, 415
BsmFI	GGGAC	1 cut(s)	574
BsnI	GGCC	1 cut(s)	52
BsoBI	CYCGRG	1 cut(s)	302
Bsp119I	TTCGAA	1 cut(s)	248
Bsp1286I	GDGCHC	2 cut(s)	285, 648
Bsp143I	GATC	5 cut(s)	55, 117, 220, 231, 584
Bsp19I	CCATGG	1 cut(s)	272
Bsp68I	TCGCGA	1 cut(s)	16
BspACI	CCGC	2 cut(s)	186, 415
BspANI	GGCC	1 cut(s)	52
BspCNI	CTCAG	3 cut(s)	43, 249, 547
BspFNI	CGCG	1 cut(s)	16
BspLI	GGNNCC	1 cut(s)	608
BspPI	GGATC	3 cut(s)	215, 226, 579
BspT104I	TTCGAA	1 cut(s)	248
BsrBI	CCGCTC	1 cut(s)	186
BsrDI	GCAATG	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	47, 272
BssMI	GATC	5 cut(s)	55, 117, 220, 231, 584
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	272
Bst4CI	ACNGT	3 cut(s)	199, 394, 592
Bst6I	CTCTTC	1 cut(s)	478
BstACI	GRCGYC	1 cut(s)	84
BstBI	TTCGAA	1 cut(s)	248
BstC8I	GCNNGC	3 cut(s)	417, 525, 540
BstDEI	CTNAG	4 cut(s)	30, 236, 478, 534
BstDSI	CCRYGG	2 cut(s)	47, 272
BstF5I	GGATG	2 cut(s)	325, 457
BstFNI	CGCG	1 cut(s)	16
BstKTI	GATC	5 cut(s)	58, 120, 223, 234, 587
BstMBI	GATC	5 cut(s)	55, 117, 220, 231, 584
BstMWI	GCNNNNNNNGC	3 cut(s)	352, 412, 551
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	1 cut(s)	641
BstSLI	GKGCMC	1 cut(s)	648
BstUI	CGCG	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	554
BstX2I	RGATCY	2 cut(s)	220, 584
BstYI	RGATCY	2 cut(s)	220, 584
Bsu36I	CCTNAGG	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	52
BtgI	CCRYGG	2 cut(s)	47, 272
BtgZI	GCGATG	1 cut(s)	458
BtrI	CACGTC	1 cut(s)	603
BtsCI	GGATG	2 cut(s)	325, 457
BtuMI	TCGCGA	1 cut(s)	16
Cac8I	GCNNGC	3 cut(s)	417, 525, 540
Cfr13I	GGNCC	1 cut(s)	51
Csp6I	GTAC	2 cut(s)	139, 614
CviAII	CATG	2 cut(s)	273, 524
CviQI	GTAC	2 cut(s)	139, 614
DdeI	CTNAG	4 cut(s)	30, 236, 478, 534
DpnI	GATC	5 cut(s)	57, 119, 222, 233, 586
DpnII	GATC	5 cut(s)	55, 117, 220, 231, 584
Eam1104I	CTCTTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	478
Eco130I	CCWWGG	1 cut(s)	272
Eco24I	GRGCYC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	477
Eco81I	CCTNAGG	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	302
EcoRI	GAATTC	2 cut(s)	145, 177
EcoT14I	CCWWGG	1 cut(s)	272
EcoT38I	GRGCYC	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	272
FaeI	CATG	2 cut(s)	276, 527
FalI	AAGNNNNNCTT	2 cut(s)	475, 507
FaqI	GGGAC	1 cut(s)	574
FatI	CATG	2 cut(s)	272, 523
FauI	CCCGC	1 cut(s)	408
Fnu4HI	GCNGC	1 cut(s)	543
FokI	GGATG	2 cut(s)	332, 444
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	1 cut(s)	543
FspBI	CTAG	3 cut(s)	6, 132, 649
GluI	GCNGC	1 cut(s)	543
HaeIII	GGCC	1 cut(s)	52
HapII	CCGG	1 cut(s)	642
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	276, 527
HinfI	GANTC	2 cut(s)	101, 112
HpaII	CCGG	1 cut(s)	642
Hpy188I	TCNGA	5 cut(s)	33, 100, 106, 117, 183
Hpy188III	TCNNGA	3 cut(s)	15, 224, 495
Hpy99I	CGWCG	3 cut(s)	68, 86, 89
HpyAV	CCTTC	1 cut(s)	357
HpyCH4III	ACNGT	3 cut(s)	199, 394, 592
HpyCH4IV	ACGT	3 cut(s)	35, 84, 602
HpyCH4V	TGCA	5 cut(s)	160, 172, 290, 512, 542
HpyF10VI	GCNNNNNNNGC	3 cut(s)	352, 412, 551
HpyF3I	CTNAG	4 cut(s)	30, 236, 478, 534
HpySE526I	ACGT	3 cut(s)	35, 84, 602
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	276, 527
Kzo9I	GATC	5 cut(s)	55, 117, 220, 231, 584
LmnI	GCTCC	5 cut(s)	14, 157, 183, 411, 606
LpnPI	CCDG	7 cut(s)	223, 237, 336, 395, 474, 480, 480
Lsp1109I	GCAGC	1 cut(s)	554
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	3 cut(s)	6, 132, 649
MaeII	ACGT	3 cut(s)	35, 84, 602
MalI	GATC	5 cut(s)	57, 119, 222, 233, 586
MbiI	CCGCTC	1 cut(s)	186
MboI	GATC	5 cut(s)	55, 117, 220, 231, 584
MboII	GAAGA	2 cut(s)	439, 495
MflI	RGATCY	2 cut(s)	220, 584
MhlI	GDGCHC	2 cut(s)	285, 648
MluCI	AATT	3 cut(s)	145, 177, 251
MlyI	GAGTC	1 cut(s)	106
MslI	CAYNNNNRTG	1 cut(s)	593
MspI	CCGG	1 cut(s)	642
MspR9I	CCNGG	1 cut(s)	643
MvnI	CGCG	1 cut(s)	16
MwoI	GCNNNNNNNGC	3 cut(s)	352, 412, 551
NciI	CCSGG	1 cut(s)	643
NcoI	CCATGG	1 cut(s)	272
NdeII	GATC	5 cut(s)	55, 117, 220, 231, 584
NlaIII	CATG	2 cut(s)	276, 527
NlaIV	GGNNCC	1 cut(s)	608
NruI	TCGCGA	1 cut(s)	16
NspI	RCATGY	1 cut(s)	527
NspV	TTCGAA	1 cut(s)	248
PaeI	GCATGC	1 cut(s)	527
PaeR7I	CTCGAG	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	544
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	608
PspPI	GGNCC	1 cut(s)	51
PspXI	VCTCGAGB	1 cut(s)	302
PsuI	RGATCY	2 cut(s)	220, 584
RruI	TCGCGA	1 cut(s)	16
RsaI	GTAC	2 cut(s)	140, 615
RsaNI	GTAC	2 cut(s)	139, 614
RseI	CAYNNNNRTG	1 cut(s)	593
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	5 cut(s)	55, 117, 220, 231, 584
Sau96I	GGNCC	1 cut(s)	51
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	643
SduI	GDGCHC	2 cut(s)	285, 648
SfaNI	GCATC	1 cut(s)	277
Sfr274I	CTCGAG	1 cut(s)	302
SfuI	TTCGAA	1 cut(s)	248
SlaI	CTCGAG	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	593
SmlI	CTYRAG	2 cut(s)	302, 369
SmoI	CTYRAG	2 cut(s)	302, 369
SphI	GCATGC	1 cut(s)	527
Sse9I	AATT	3 cut(s)	145, 177, 251
SsiI	CCGC	2 cut(s)	186, 415
SspI	AATATT	2 cut(s)	501, 571
SspMI	CTAG	3 cut(s)	6, 132, 649
StyD4I	CCNGG	1 cut(s)	641
StyI	CCWWGG	1 cut(s)	272
TaaI	ACNGT	3 cut(s)	199, 394, 592
TaiI	ACGT	3 cut(s)	38, 87, 605
TaqI	TCGA	4 cut(s)	91, 120, 248, 303
TasI	AATT	3 cut(s)	145, 177, 251
TatI	WGTACW	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	101
TseI	GCWGC	1 cut(s)	542
TspGWI	ACGGA	1 cut(s)	81
XapI	RAATTY	2 cut(s)	145, 177
XceI	RCATGY	1 cut(s)	527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	162
XhoI	CTCGAG	1 cut(s)	302
XspI	CTAG	3 cut(s)	6, 132, 649
ZraI	GACGTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.