Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004698

Physical Location & Seq

Genomic Coordinates Forward (+)

42612316 .. 42612594

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0309800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGATGGCCCTTTGAAATTGAATGTGGATGGTGCTTTTGTACCCAATGTACAATTTGGAGGTACATGTGGAGTTCTCCGCAATGCTCAAGGTCAGTTTCTTACTGCCTTTTCGCGTCGAATGAACTTTGTAAGCTCTCCATTACATGCCGAGTTGTTGGCCTTAAGGAATGGTTTAGAACTACTGCAAGTTATGGATGTTACTAACGCTATGGTGGAGACTGACTGCTTGTTGGCTGTACAAGCCATTAACTCAGAGAGTTGTGATTTATCTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000455 GO:0001522 GO:0003674 GO:0003824 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016853 GO:0016866 GO:0022613 GO:0031118 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

92

Amino Acids

9.88

Weight (kDa)

4.56

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	8 - 87	6e-14	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52260 AT3G52260 AT3G52260 AT3G52260
fragaria_vesca	FvH4_7g19860
malus_domestica	MD07G1176900.v1.1
prunus_persica	Prupe.2G215700_v2.0.a1 Prupe.2G215700_v2.0.a1
pyrus_communis	pycom07g17100
rosa_chinensis	RchiOBHm_Chr1g0363851 RchiOBHm_Chr2g0104231 RchiOBHm_Chr2g0110391 RchiOBHm_Chr5g0046841
rosa_laevigata	RLG00000027541 RLG00000030372
rosa_multiflora	Rmu_sc0002474.1_g000014
rosa_roxburghii	Rroxscaffold_4G00292920
rosa_rugosa	Rorug01G0309800 Rorug01G0309900
rosa_samantha	Rh1AG318300 Rh1BG281500 Rh1CG297900 Rh1DG312800 Rh3CG345100 Rh4AG103100 Rh4CG111400 Rh5AG515700 Rh5BG320500 Rh5DG331200
rosa_wichuraiana	Rw1G028250 Rw5G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	115
AciI	CCGC	1 cut(s)	79
AfaI	GTAC	4 cut(s)	42, 51, 64, 240
AflII	CTTAAG	1 cut(s)	163
AflIII	ACRYGT	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	16, 22
AluBI	AGCT	1 cut(s)	135
AluI	AGCT	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	212
AoxI	GGCC	2 cut(s)	7, 159
AspS9I	GGNCC	1 cut(s)	8
BccI	CCATC	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	212
BfrI	CTTAAG	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	8
BpuEI	CTTGAG	1 cut(s)	72
Bse3DI	GCAATG	1 cut(s)	88
BseGI	GGATG	3 cut(s)	10, 34, 202
BseMI	GCAATG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	115
BshFI	GGCC	2 cut(s)	9, 161
BsmAI	GTCTC	1 cut(s)	212
BsnI	GGCC	2 cut(s)	9, 161
Bsp1407I	TGTACA	2 cut(s)	49, 238
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	2 cut(s)	9, 161
BspCNI	CTCAG	1 cut(s)	266
BspFNI	CGCG	1 cut(s)	115
BspTI	CTTAAG	1 cut(s)	163
BsrDI	GCAATG	1 cut(s)	88
BsrGI	TGTACA	2 cut(s)	49, 238
BstAFI	CTTAAG	1 cut(s)	163
BstAUI	TGTACA	2 cut(s)	49, 238
BstDEI	CTNAG	2 cut(s)	253, 276
BstF5I	GGATG	3 cut(s)	10, 34, 202
BstFNI	CGCG	1 cut(s)	115
BstMAI	GTCTC	1 cut(s)	212
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNSI	RCATGY	2 cut(s)	69, 149
BstUI	CGCG	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	9, 161
BtsCI	GGATG	3 cut(s)	10, 34, 202
Cfr13I	GGNCC	1 cut(s)	8
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	4 cut(s)	41, 50, 63, 239
CviAII	CATG	2 cut(s)	66, 146
CviJI	RGCY	5 cut(s)	9, 135, 161, 236, 245
CviKI_1	RGCY	5 cut(s)	9, 135, 161, 236, 245
CviQI	GTAC	4 cut(s)	41, 50, 63, 239
DdeI	CTNAG	2 cut(s)	253, 276
FaeI	CATG	2 cut(s)	69, 149
FaiI	YATR	4 cut(s)	67, 147, 194, 212
FatI	CATG	2 cut(s)	65, 145
FokI	GGATG	3 cut(s)	17, 41, 209
HaeIII	GGCC	2 cut(s)	9, 161
HgaI	GACGC	1 cut(s)	104
Hin1II	CATG	2 cut(s)	69, 149
Hpy188I	TCNGA	1 cut(s)	256
Hpy99I	CGWCG	1 cut(s)	120
HpyCH4V	TGCA	1 cut(s)	187
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	2 cut(s)	253, 276
Hsp92II	CATG	2 cut(s)	69, 149
MaeIII	GTNAC	1 cut(s)	199
MluCI	AATT	2 cut(s)	17, 53
MnlI	CCTC	1 cut(s)	53
MseI	TTAA	2 cut(s)	164, 249
MspCI	CTTAAG	1 cut(s)	163
MvnI	CGCG	1 cut(s)	115
MwoI	GCNNNNNNNGC	1 cut(s)	242
NlaIII	CATG	2 cut(s)	69, 149
NmeAIII	GCCGAG	1 cut(s)	175
NspI	RCATGY	2 cut(s)	69, 149
PciI	ACATGT	1 cut(s)	65
PscI	ACATGT	1 cut(s)	65
PspPI	GGNCC	1 cut(s)	8
RsaI	GTAC	4 cut(s)	42, 51, 64, 240
RsaNI	GTAC	4 cut(s)	41, 50, 63, 239
SaqAI	TTAA	2 cut(s)	164, 249
Sau96I	GGNCC	1 cut(s)	8
SetI	ASST	3 cut(s)	64, 94, 137
SgeI	CNNG	8 cut(s)	78, 101, 126, 158, 163, 200, 241, 254
SmlI	CTYRAG	2 cut(s)	87, 163
SmoI	CTYRAG	2 cut(s)	87, 163
Sse9I	AATT	2 cut(s)	17, 53
SsiI	CCGC	1 cut(s)	79
TaqI	TCGA	1 cut(s)	118
TasI	AATT	2 cut(s)	17, 53
TatI	WGTACW	2 cut(s)	49, 238
Tru1I	TTAA	2 cut(s)	164, 249
Tru9I	TTAA	2 cut(s)	164, 249
TspDTI	ATGAA	1 cut(s)	137
Vha464I	CTTAAG	1 cut(s)	163
XceI	RCATGY	2 cut(s)	69, 149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.