Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004698

Physical Location & Seq

Genomic Coordinates Reverse (-)

87541762 .. 87543818

Gene Structure 2057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG515700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAACATCTGCTTTGGAAATTTACAGCATTGCTTTGTTGGTCTACAGATAACAGTTGATGGAGAAGTTATTAGAGACTTGAATACGATCCTCAGGGTTGGTTCACAATTGGTCTATCATAGGCTTCCGTGGAGAGAGCCGGATGCGCCATACTTGCTGGAGGTTCTGTATGACAGTATGAGGATGATGATATGGCGGGCTACAAGTTTTACCTGGAGGTCTTTTCCAGCAACGGACAGTTCTAACACAGCTCCTATGGCGGCAAACTCAGAAGATCCATCACTTAGCATGCCAAAAATCACATCTTGTTCCTGTTCATCGCATAGGAAGGGGCACTTCAGTGACACCAACATGAAGCTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000455 GO:0001522 GO:0003674 GO:0003824 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016853 GO:0016866 GO:0022613 GO:0031118 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

121

Amino Acids

13.76

Weight (kDa)

6.88

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52260 AT3G52260 AT3G52260 AT3G52260
fragaria_vesca	FvH4_7g19860
malus_domestica	MD07G1176900.v1.1
prunus_persica	Prupe.2G215700_v2.0.a1 Prupe.2G215700_v2.0.a1
pyrus_communis	pycom07g17100
rosa_chinensis	RchiOBHm_Chr1g0363851 RchiOBHm_Chr2g0104231 RchiOBHm_Chr2g0110391 RchiOBHm_Chr5g0046841
rosa_laevigata	RLG00000027541 RLG00000030372
rosa_multiflora	Rmu_sc0002474.1_g000014
rosa_roxburghii	Rroxscaffold_4G00292920
rosa_rugosa	Rorug01G0309800 Rorug01G0309900
rosa_samantha	Rh1AG318300 Rh1BG281500 Rh1CG297900 Rh1DG312800 Rh3CG345100 Rh4AG103100 Rh4CG111400 Rh5AG515700 Rh5BG320500 Rh5DG331200
rosa_wichuraiana	Rw1G028250 Rw5G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	43
AciI	CCGC	2 cut(s)	196, 260
AclWI	GGATC	2 cut(s)	82, 269
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	322
AgsI	TTSAA	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	212
AleI	CACNNNNGTG	1 cut(s)	339
AluBI	AGCT	2 cut(s)	251, 358
AluI	AGCT	2 cut(s)	251, 358
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	2 cut(s)	82, 269
ApoI	RAATTY	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	148
AxyI	CCTNAGG	1 cut(s)	92
BaeGI	GKGCMC	1 cut(s)	336
BccI	CCATC	2 cut(s)	53, 286
BciT130I	CCWGG	1 cut(s)	214
BcoDI	GTCTC	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	44
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	214
BmrFI	CCNGG	1 cut(s)	214
BmsI	GCATC	1 cut(s)	133
BpmI	CTGGAG	2 cut(s)	179, 235
BsaJI	CCNNGG	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bse21I	CCTNAGG	1 cut(s)	92
Bse3DI	GCAATG	1 cut(s)	28
BseBI	CCWGG	1 cut(s)	214
BseDI	CCNNGG	1 cut(s)	128
BseGI	GGATG	2 cut(s)	148, 189
BseMI	GCAATG	1 cut(s)	28
BseMII	CTCAG	2 cut(s)	106, 282
BseSI	GKGCMC	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	69
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	2 cut(s)	87, 274
BspACI	CCGC	2 cut(s)	196, 260
BspCNI	CTCAG	2 cut(s)	105, 281
BspPI	GGATC	2 cut(s)	82, 269
BsrDI	GCAATG	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	128
BssMI	GATC	2 cut(s)	87, 274
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	3 cut(s)	55, 176, 239
BstC8I	GCNNGC	2 cut(s)	198, 290
BstDEI	CTNAG	3 cut(s)	92, 268, 284
BstDSI	CCRYGG	1 cut(s)	128
BstF5I	GGATG	2 cut(s)	148, 189
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	2 cut(s)	90, 277
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	2 cut(s)	87, 274
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 154, 257
BstNI	CCWGG	1 cut(s)	214
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	212
BstSFI	CTRYAG	1 cut(s)	44
BstSLI	GKGCMC	1 cut(s)	336
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
Bsu36I	CCTNAGG	1 cut(s)	92
BtgI	CCRYGG	1 cut(s)	128
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	2 cut(s)	148, 189
BtsIMutI	CAGTG	1 cut(s)	346
Cac8I	GCNNGC	2 cut(s)	198, 290
CfoI	GCGC	1 cut(s)	148
CviAII	CATG	2 cut(s)	289, 352
CviJI	RGCY	5 cut(s)	124, 139, 200, 251, 358
CviKI_1	RGCY	5 cut(s)	124, 139, 200, 251, 358
DdeI	CTNAG	3 cut(s)	92, 268, 284
DpnI	GATC	2 cut(s)	89, 276
DpnII	GATC	2 cut(s)	87, 274
Eco57I	CTGAAG	1 cut(s)	322
Eco81I	CCTNAGG	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	212
FaeI	CATG	2 cut(s)	292, 355
FaiI	YATR	9 cut(s)	120, 151, 171, 179, 193, 257, 290, 324, 353
FalI	AAGNNNNNCTT	2 cut(s)	320, 352
FatI	CATG	2 cut(s)	288, 351
FauI	CCCGC	1 cut(s)	189
FblI	GTMKAC	1 cut(s)	43
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	2 cut(s)	155, 196
Fsp4HI	GCNGC	1 cut(s)	261
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	261
GsuI	CTGGAG	2 cut(s)	179, 235
HapII	CCGG	1 cut(s)	140
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	2 cut(s)	292, 355
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HindIII	AAGCTT	1 cut(s)	356
HpaII	CCGG	1 cut(s)	140
Hpy166II	GTNNAC	2 cut(s)	44, 104
Hpy188I	TCNGA	1 cut(s)	271
Hpy8I	GTNNAC	2 cut(s)	44, 104
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	3 cut(s)	55, 176, 239
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 154, 257
HpyF3I	CTNAG	3 cut(s)	92, 268, 284
Hsp92II	CATG	2 cut(s)	292, 355
HspAI	GCGC	1 cut(s)	146
Kzo9I	GATC	2 cut(s)	87, 274
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	7 cut(s)	79, 143, 153, 199, 226, 240, 325
LweI	GCATC	1 cut(s)	133
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	2 cut(s)	89, 276
MboI	GATC	2 cut(s)	87, 274
MboII	GAAGA	1 cut(s)	284
MfeI	CAATTG	1 cut(s)	107
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	2 cut(s)	19, 107
MnlI	CCTC	4 cut(s)	101, 154, 174, 210
MslI	CAYNNNNRTG	2 cut(s)	339, 350
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	214
MunI	CAATTG	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	3 cut(s)	145, 154, 257
NdeII	GATC	2 cut(s)	87, 274
NlaIII	CATG	2 cut(s)	292, 355
NmuCI	GTSAC	1 cut(s)	341
NspI	RCATGY	1 cut(s)	292
OliI	CACNNNNGTG	1 cut(s)	339
PaeI	GCATGC	1 cut(s)	292
PkrI	GCNGC	1 cut(s)	262
Psp6I	CCWGG	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	274
RseI	CAYNNNNRTG	2 cut(s)	339, 350
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	2 cut(s)	87, 274
ScrFI	CCNGG	1 cut(s)	214
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	5 cut(s)	165, 215, 221, 253, 360
SfaNI	GCATC	1 cut(s)	133
SfcI	CTRYAG	1 cut(s)	44
SmiMI	CAYNNNNRTG	2 cut(s)	339, 350
SphI	GCATGC	1 cut(s)	292
Sse9I	AATT	2 cut(s)	19, 107
SsiI	CCGC	2 cut(s)	196, 260
StyD4I	CCNGG	1 cut(s)	212
TaaI	ACNGT	3 cut(s)	55, 176, 239
TasI	AATT	2 cut(s)	19, 107
TauI	GCSGC	1 cut(s)	263
TscAI	CASTG	1 cut(s)	346
TseFI	GTSAC	1 cut(s)	341
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	2 cut(s)	17, 306
TspGWI	ACGGA	2 cut(s)	117, 248
TspRI	CASTG	1 cut(s)	346
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.