Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002474.1

Orthogroup ID

OG0004698

Physical Location & Seq

Genomic Coordinates Reverse (-)

62838 .. 64390

Gene Structure 1553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002474.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

atgattgctttgaataagccaggcgggctacaagttttacctggaggtcttttccagcaacagacagttctaacacaactcctatggcggcaaactcagaagatccatcacttagcatgccaaaaatcacatcttgttcctgttcatcgcctaggaaggggcacttcaggaatactgctatgtgcaaagataaatcatgccaaaaagcaacttgcagcatattttgctgatgggacatcccatattggagatgacagtgacaccaacatgaagcttctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000455 GO:0001522 GO:0003674 GO:0003824 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016853 GO:0016866 GO:0022613 GO:0031118 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

93

Amino Acids

10.19

Weight (kDa)

9.83

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52260 AT3G52260 AT3G52260 AT3G52260
fragaria_vesca	FvH4_7g19860
malus_domestica	MD07G1176900.v1.1
prunus_persica	Prupe.2G215700_v2.0.a1 Prupe.2G215700_v2.0.a1
pyrus_communis	pycom07g17100
rosa_chinensis	RchiOBHm_Chr1g0363851 RchiOBHm_Chr2g0104231 RchiOBHm_Chr2g0110391 RchiOBHm_Chr5g0046841
rosa_laevigata	RLG00000027541 RLG00000030372
rosa_multiflora	Rmu_sc0002474.1_g000014
rosa_roxburghii	Rroxscaffold_4G00292920
rosa_rugosa	Rorug01G0309800 Rorug01G0309900
rosa_samantha	Rh1AG318300 Rh1BG281500 Rh1CG297900 Rh1DG312800 Rh3CG345100 Rh4AG103100 Rh4CG111400 Rh5AG515700 Rh5BG320500 Rh5DG331200
rosa_wichuraiana	Rw1G028250 Rw5G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	24, 88
AclWI	GGATC	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	157
AgsI	TTSAA	1 cut(s)	13
AjnI	CCWGG	2 cut(s)	19, 40
AluBI	AGCT	1 cut(s)	274
AluI	AGCT	1 cut(s)	274
AlwI	GGATC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	215
AspA2I	CCTAGG	1 cut(s)	151
AvrII	CCTAGG	1 cut(s)	151
BaeGI	GKGCMC	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	227
BccI	CCATC	2 cut(s)	114, 224
BciT130I	CCWGG	2 cut(s)	21, 42
BfaI	CTAG	1 cut(s)	152
BglI	GCCNNNNNGGC	1 cut(s)	25
BisI	GCNGC	2 cut(s)	89, 216
BlnI	CCTAGG	1 cut(s)	151
BlsI	GCNGC	2 cut(s)	90, 217
Bme1390I	CCNGG	2 cut(s)	21, 42
BmrFI	CCNGG	2 cut(s)	21, 42
BpmI	CTGGAG	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	1 cut(s)	157
BseBI	CCWGG	2 cut(s)	21, 42
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	1 cut(s)	236
BseLI	CCNNNNNNNGG	1 cut(s)	157
BseMII	CTCAG	1 cut(s)	110
BseSI	GKGCMC	1 cut(s)	164
BseXI	GCAGC	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	247
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp143I	GATC	1 cut(s)	102
BspACI	CCGC	2 cut(s)	24, 88
BspCNI	CTCAG	1 cut(s)	109
BspPI	GGATC	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	151
Bst2UI	CCWGG	2 cut(s)	21, 42
Bst4CI	ACNGT	2 cut(s)	67, 257
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	26, 118
BstDEI	CTNAG	2 cut(s)	96, 112
BstF5I	GGATG	1 cut(s)	236
BstKTI	GATC	1 cut(s)	105
BstMBI	GATC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 224
BstNI	CCWGG	2 cut(s)	21, 42
BstNSI	RCATGY	1 cut(s)	120
BstSCI	CCNGG	2 cut(s)	19, 40
BstSLI	GKGCMC	1 cut(s)	164
BstV1I	GCAGC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BtgZI	GCGATG	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	236
BtsIMutI	CAGTG	1 cut(s)	262
Cac8I	GCNNGC	2 cut(s)	26, 118
CviAII	CATG	3 cut(s)	117, 197, 268
CviJI	RGCY	3 cut(s)	19, 28, 274
CviKI_1	RGCY	3 cut(s)	19, 28, 274
DdeI	CTNAG	2 cut(s)	96, 112
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	150
EcoRII	CCWGG	2 cut(s)	19, 40
EcoT14I	CCWWGG	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	3 cut(s)	120, 200, 271
FaiI	YATR	7 cut(s)	85, 118, 181, 198, 220, 243, 269
FalI	AAGNNNNNCTT	2 cut(s)	148, 180
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	3 cut(s)	116, 196, 267
FauI	CCCGC	1 cut(s)	17
Fnu4HI	GCNGC	2 cut(s)	89, 216
FokI	GGATG	1 cut(s)	223
Fsp4HI	GCNGC	2 cut(s)	89, 216
FspBI	CTAG	1 cut(s)	152
GluI	GCNGC	2 cut(s)	89, 216
GsuI	CTGGAG	1 cut(s)	63
Hin1II	CATG	3 cut(s)	120, 200, 271
HindIII	AAGCTT	1 cut(s)	272
Hpy188I	TCNGA	1 cut(s)	99
Hpy188III	TCNNGA	1 cut(s)	168
HpyAV	CCTTC	1 cut(s)	150
HpyCH4III	ACNGT	2 cut(s)	67, 257
HpyCH4V	TGCA	2 cut(s)	185, 215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 224
HpyF3I	CTNAG	2 cut(s)	96, 112
Hsp92II	CATG	3 cut(s)	120, 200, 271
Kzo9I	GATC	1 cut(s)	102
LpnPI	CCDG	7 cut(s)	6, 27, 33, 54, 68, 153, 153
Lsp1109I	GCAGC	1 cut(s)	227
MaeI	CTAG	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MboII	GAAGA	1 cut(s)	112
MflI	RGATCY	1 cut(s)	102
MhlI	GDGCHC	1 cut(s)	164
MnlI	CCTC	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	266
MspR9I	CCNGG	2 cut(s)	21, 42
MvaI	CCWGG	2 cut(s)	21, 42
MwoI	GCNNNNNNNGC	2 cut(s)	25, 224
NdeII	GATC	1 cut(s)	102
NlaIII	CATG	3 cut(s)	120, 200, 271
NmuCI	GTSAC	1 cut(s)	257
NspI	RCATGY	1 cut(s)	120
PaeI	GCATGC	1 cut(s)	120
PkrI	GCNGC	2 cut(s)	90, 217
Psp6I	CCWGG	2 cut(s)	19, 40
PspGI	CCWGG	2 cut(s)	19, 40
PsuI	RGATCY	1 cut(s)	102
RseI	CAYNNNNRTG	1 cut(s)	266
SatI	GCNGC	2 cut(s)	89, 216
Sau3AI	GATC	1 cut(s)	102
ScrFI	CCNGG	2 cut(s)	21, 42
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	3 cut(s)	43, 49, 276
SmiMI	CAYNNNNRTG	1 cut(s)	266
SphI	GCATGC	1 cut(s)	120
SsiI	CCGC	2 cut(s)	24, 88
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	2 cut(s)	19, 40
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	2 cut(s)	67, 257
TauI	GCSGC	1 cut(s)	91
TscAI	CASTG	1 cut(s)	262
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	134
TspRI	CASTG	1 cut(s)	262
XceI	RCATGY	1 cut(s)	120
XmaJI	CCTAGG	1 cut(s)	151
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.