Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004698

Physical Location & Seq

Genomic Coordinates Forward (+)

42621203 .. 42627344

Gene Structure 6142 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0309900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGGTTGCGCAAGCTCAAACAAAGCCAGAGTCAAAGCTGGCCCAAGTGCCAATTTAGAGCTCAATCCGGCTATTCTTGCTTTTTCTGTGAGTGAGGTAGAGTCTTTGTATGAGCTATATAAGAAACTAAGCAGCTCTGTAGTTCAAGATGGGCTTATACACAAGGAAGAGTTGCAGCTTGCGCTTTTCCAAAACAGCAGTAAGCAGAACCTCTTTTTCGACAGGATATTTGATCTTTTCGATGTCAGTAACAATGGGCGTATTGAGTTTGAAGAGTTTGTTCATACATTGAGTGTTTTCCACCCAAGAACTCCTGATGAAGTCAAAATTACATATGCTTTTAAGTTATATGATTTGAGGCACACTGGTTACATCGAGCGTGAGGAGTTGAAGGAGATGGTGATGGCTCTTCTGAACGAATCTGATCTGATTCTTTCAGATGATATTGTTGAAATGATTGTAAATAAGACATTCATGGAAGCAGATGGAAAAGCAGACGGTAGGATTGATGAAGAAGAGTGGAAGGAATATGTAGCTAAAAATCCTTCTCTTCTGAAAAACATGACTCTTCCATACTTAATGGACATATCTCTAGCATTTCCCAGCTTTGTGCTGAATACTCAAGCAACTAGACATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000455 GO:0001522 GO:0003674 GO:0003824 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009982 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016853 GO:0016866 GO:0022613 GO:0031118 GO:0031119 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

213

Amino Acids

24.37

Weight (kDa)

4.88

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	73 - 97	2.9e-06	EF hand domain
EF-hand_7	PF13499	108 - 177	2.6e-09	EF-hand domain pair

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52260 AT3G52260 AT3G52260 AT3G52260
fragaria_vesca	FvH4_7g19860
malus_domestica	MD07G1176900.v1.1
prunus_persica	Prupe.2G215700_v2.0.a1 Prupe.2G215700_v2.0.a1
pyrus_communis	pycom07g17100
rosa_chinensis	RchiOBHm_Chr1g0363851 RchiOBHm_Chr2g0104231 RchiOBHm_Chr2g0110391 RchiOBHm_Chr5g0046841
rosa_laevigata	RLG00000027541 RLG00000030372
rosa_multiflora	Rmu_sc0002474.1_g000014
rosa_roxburghii	Rroxscaffold_4G00292920
rosa_rugosa	Rorug01G0309800 Rorug01G0309900
rosa_samantha	Rh1AG318300 Rh1BG281500 Rh1CG297900 Rh1DG312800 Rh3CG345100 Rh4AG103100 Rh4CG111400 Rh5AG515700 Rh5BG320500 Rh5DG331200
rosa_wichuraiana	Rw1G028250 Rw5G039760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	10
AgsI	TTSAA	4 cut(s)	146, 272, 391, 452
AluBI	AGCT	8 cut(s)	15, 38, 61, 115, 135, 178, 536, 606
AluI	AGCT	8 cut(s)	15, 38, 61, 115, 135, 178, 536, 606
Alw21I	GWGCWC	1 cut(s)	63
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	2 cut(s)	132, 175
ArsI	GACNNNNNNTTYG	4 cut(s)	15, 47, 212, 244
AspLEI	GCGC	2 cut(s)	11, 184
AspS9I	GGNCC	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	2 cut(s)	144, 187
BccI	CCATC	4 cut(s)	143, 391, 397, 479
BfaI	CTAG	2 cut(s)	593, 630
BfmI	CTRYAG	1 cut(s)	138
BisI	GCNGC	2 cut(s)	133, 176
BlsI	GCNGC	2 cut(s)	134, 177
BmgT120I	GGNCC	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	606
Bse1I	ACTGG	1 cut(s)	370
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	398
BseXI	GCAGC	2 cut(s)	144, 187
BseYI	CCCAGC	1 cut(s)	602
BshFI	GGCC	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	68
BsnI	GGCC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	232, 424
BspANI	GGCC	1 cut(s)	42
BspQI	GCTCTTC	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	370
BssMI	GATC	2 cut(s)	232, 424
Bst4CI	ACNGT	1 cut(s)	500
Bst6I	CTCTTC	6 cut(s)	162, 267, 414, 510, 555, 573
BstC8I	GCNNGC	3 cut(s)	13, 40, 180
BstDEI	CTNAG	1 cut(s)	128
BstHHI	GCGC	2 cut(s)	11, 184
BstKTI	GATC	2 cut(s)	235, 427
BstMBI	GATC	2 cut(s)	232, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 181
BstSFI	CTRYAG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	144, 187
BsuRI	GGCC	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	3 cut(s)	13, 40, 180
CfoI	GCGC	2 cut(s)	11, 184
Cfr13I	GGNCC	1 cut(s)	41
CviAII	CATG	2 cut(s)	475, 562
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	2 cut(s)	234, 426
DpnII	GATC	2 cut(s)	232, 424
Eam1104I	CTCTTC	6 cut(s)	162, 267, 414, 510, 555, 573
EarI	CTCTTC	6 cut(s)	162, 267, 414, 510, 555, 573
Ecl136II	GAGCTC	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	63
Eco53kI	GAGCTC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	63
FaeI	CATG	2 cut(s)	478, 565
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FatI	CATG	2 cut(s)	474, 561
FauNDI	CATATG	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	133, 176
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	2 cut(s)	133, 176
FspBI	CTAG	2 cut(s)	593, 630
FspI	TGCGCA	1 cut(s)	10
GlaI	GCGC	2 cut(s)	10, 183
GluI	GCNGC	2 cut(s)	133, 176
GsaI	CCCAGC	1 cut(s)	606
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	1 cut(s)	68
HhaI	GCGC	2 cut(s)	11, 184
Hin1II	CATG	2 cut(s)	478, 565
Hin6I	GCGC	2 cut(s)	9, 182
HinP1I	GCGC	2 cut(s)	9, 182
HinfI	GANTC	5 cut(s)	30, 101, 419, 430, 565
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	1 cut(s)	412
Hpy188I	TCNGA	5 cut(s)	414, 424, 429, 439, 555
Hpy188III	TCNNGA	2 cut(s)	146, 314
HpyAV	CCTTC	3 cut(s)	385, 517, 555
HpyCH4III	ACNGT	1 cut(s)	500
HpyCH4V	TGCA	1 cut(s)	175
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 181
HpyF3I	CTNAG	1 cut(s)	128
Hsp92II	CATG	2 cut(s)	478, 565
HspAI	GCGC	2 cut(s)	9, 182
Kzo9I	GATC	2 cut(s)	232, 424
LguI	GCTCTTC	1 cut(s)	414
LpnPI	CCDG	7 cut(s)	24, 40, 81, 208, 327, 351, 616
Lsp1109I	GCAGC	2 cut(s)	144, 187
MaeI	CTAG	2 cut(s)	593, 630
MaeIII	GTNAC	2 cut(s)	248, 368
MalI	GATC	2 cut(s)	234, 426
MboI	GATC	2 cut(s)	232, 424
MboII	GAAGA	7 cut(s)	179, 284, 401, 524, 527, 542, 560
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	3 cut(s)	52, 327, 637
MlyI	GAGTC	3 cut(s)	39, 110, 559
MnlI	CCTC	4 cut(s)	88, 221, 351, 376
MseI	TTAA	3 cut(s)	342, 578, 640
MspI	CCGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	2 cut(s)	77, 181
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	2 cut(s)	232, 424
NlaIII	CATG	2 cut(s)	478, 565
NsbI	TGCGCA	1 cut(s)	10
PciSI	GCTCTTC	1 cut(s)	414
PfeI	GAWTC	2 cut(s)	419, 430
PkrI	GCNGC	2 cut(s)	134, 177
PleI	GAGTC	3 cut(s)	38, 109, 559
PpsI	GAGTC	3 cut(s)	38, 109, 559
Psp124BI	GAGCTC	1 cut(s)	63
PspFI	CCCAGC	1 cut(s)	602
PspPI	GGNCC	1 cut(s)	41
SacI	GAGCTC	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	414
SaqAI	TTAA	3 cut(s)	342, 578, 640
SatI	GCNGC	2 cut(s)	133, 176
Sau3AI	GATC	2 cut(s)	232, 424
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	3 cut(s)	39, 110, 559
SduI	GDGCHC	1 cut(s)	63
SfcI	CTRYAG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	621
SmoI	CTYRAG	1 cut(s)	621
Sse9I	AATT	3 cut(s)	52, 327, 637
SspMI	CTAG	2 cut(s)	593, 630
SstI	GAGCTC	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	500
TaqI	TCGA	3 cut(s)	219, 240, 375
TasI	AATT	3 cut(s)	52, 327, 637
TfiI	GAWTC	2 cut(s)	419, 430
Tru1I	TTAA	3 cut(s)	342, 578, 640
Tru9I	TTAA	3 cut(s)	342, 578, 640
TscAI	CASTG	1 cut(s)	370
TseI	GCWGC	2 cut(s)	132, 175
TspDTI	ATGAA	4 cut(s)	272, 333, 463, 525
TspRI	CASTG	1 cut(s)	370
XspI	CTAG	2 cut(s)	593, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.