Prupe.2G256400_v2.0.a1

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
26834596 .. 26838256
3661 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G256400.1

Sequence Viewer

Length: 1578 bp
ATGGACGCCGACTCTTTCAACCCCAACAGCGCGCTAAGCGACACGCGCTTCTCCGACCTGAAGCCGCCACTCTCCGAGCCGGTCCTCGAAGCCCTAGCCCAAGGCGGGTTCGAGTTCTGCACGCCGGTTCAAGCCGCCACAATCCCCTTACTATGCAGGTTCAAGGACGTGGCGGTGGACGCCGCTACCGGCTCGGGCAAAACCCTAGCCTTCGTGGTTCCACTGGTGGAGATACTCCGACGAGCTTCAACCGTTCCAAAACCTCAGCAGGTGATGGGAATGATTATATCTCCGACTAGGGAGCTGTCTTCGCAAATATACAACGTGGCAAAACCCTTCATTTCGACGCTGCCGAATTTCAATTGTGTGCTTTTGGTTGGTGGAGGGCAAGTGAAAGCAGACACGAAGCAAATAGAGGAGGAAGGAGCCAATTTGTTGATTGGCACTCCGGGGAGACTATACGACATTATGGAACGCATGGATGGCTTGGATTTGCGAGACCTTGAGATTTTGATTTTAGATGAGGCTGATAGGCTCTTGGATATGGGTTTCCAGAAGCAGATAAATGATATTATGTCTCGCTTGCCAAAGCTTCGTAGAACTGGTCTCTTTTCAGCTACCCAAACTGAAGCAGTTGAAGAGCTGGCCAGAGCAGGACTAAGGAATCCTGTGAGAGTCGAAGTACGAGCAGAAACAAAATCGAATAATTCGGCATTGTCGCAACAGTTAGCCTCTTCAAAAACACCTTCTGGCCTTGCCATTGAGTATCTGGAGTGCGAGGCAGACAAGAAACCGTCACAACTTGTGGATCTCCTTGTTAAGAATAAGTCTAACAAGACCATAGTATACTTCATGACTTGTGCTTGCGTTGACTACTGGGGACTTGTTCTTCCATTGCTTGGTTCTTTAAAGGGTTTCCCTTTGATTGCTCTTCATGGGAAGATGAAGCAGGCTGCAAGGGATAAAGCTTTAGCCTCATTTACATCTCTATCAAGTGGCATCCTTCTATGTACTGATGTTGCAGCTCGTGGACTCGATATTCCAGGTGTTGACTGTATAGTGCAGTATGATACCCCTCAAGATCCAAATGTTTTCGTACATAGAGTTGGCCGAACAGCTCGTATGGGTAGACAAGGAAGTGCAATCGTTTTTCTGTTGCCAAAGGAGGAAGCTTATGTAGAATTCCTGCGGATAAGAAGAGTGCCTCTTCAAGAAAGGAAATGTTCTGATGATGTTTCTAATGTTATTCCTCAGATACGATCTGCCGCAAAAAAGGACCGTGATGTCATGGAAAAGGGACTCAGGGCATTTGTTTCTTACATCCGTGCATATAAAGAACACCATTGCTCATACATTTTCAGGTGGAAAGAACTTGAAATTGGGAAACTGGGCATGGGATTCGGACTACTGCAGCTCCCTGCAATGCCTGAGGTCAAGCACCACTCTCTTTCCACAGAGGGTTTCATCCCTGTTAAAGACATCAACTTGGAGGAGATCAAGTTTAAAAAGAAGCAAAAAAGCAAGAAGTTAAACCTCAAAAACCCAACAAAAGCGCAAATGATACAGCTACTCAGATGA

Protein Analysis

526

Amino Acids

58.26

Weight (kDa)

9.03

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 259
AasI GACNNNNNNGTC 1 cut(s) 1283
Acc36I ACCTGC 2 cut(s) 147, 259
AccB7I CCANNNNNTGG 1 cut(s) 899
AccI GTMKAC 2 cut(s) 846, 1129
AccII CGCG 2 cut(s) 32, 46
AciI CCGC 7 cut(s) 65, 105, 135, 173, 183, 1189, 1266
AclWI GGATC 2 cut(s) 816, 1076
AcoI YGGCCR 2 cut(s) 645, 1108
AcsI RAATTY 2 cut(s) 355, 1181
AcuI CTGAAG 2 cut(s) 80, 648
AcyI GRCGYC 2 cut(s) 6, 180
AfaI GTAC 3 cut(s) 684, 1012, 1098
AfiI CCNNNNNNNGG 2 cut(s) 105, 899
AgsI TTSAA 9 cut(s) 19, 131, 163, 249, 361, 638, 738, 1211, 1376
AjiI CACGTC 1 cut(s) 169
AjnI CCWGG 1 cut(s) 1042
AjuI GAANNNNNNNTTGG 2 cut(s) 1362, 1394
Alw26I GTCTC 4 cut(s) 448, 492, 582, 611
AlwI GGATC 2 cut(s) 816, 1076
Ama87I CYCGRG 1 cut(s) 193
AoxI GGCC 3 cut(s) 645, 751, 1108
ApeKI GCWGC 4 cut(s) 349, 953, 1022, 1411
ApoI RAATTY 2 cut(s) 355, 1181
AspLEI GCGC 4 cut(s) 32, 34, 48, 1555
AspS9I GGNCC 2 cut(s) 82, 1276
AsuC2I CCSGG 1 cut(s) 450
AsuHPI GGTGA 1 cut(s) 283
AvaI CYCGRG 1 cut(s) 193
AvaII GGWCC 2 cut(s) 82, 1276
AxyI CCTNAGG 1 cut(s) 1428
BalI TGGCCA 1 cut(s) 647
BauI CACGAG 1 cut(s) 1026
BbsI GAAGAC 1 cut(s) 300
BbvCI CCTCAGC 1 cut(s) 264
BbvI GCAGC 4 cut(s) 336, 940, 1034, 1423
BccI CCATC 2 cut(s) 268, 476
BcgI CGANNNNNNTGC 2 cut(s) 1381, 1415
BciT130I CCWGG 1 cut(s) 1044
BcnI CCSGG 1 cut(s) 450
BcoDI GTCTC 4 cut(s) 448, 492, 582, 611
BfaI CTAG 3 cut(s) 95, 206, 297
BfmI CTRYAG 1 cut(s) 1409
BfuAI ACCTGC 2 cut(s) 147, 259
BisI GCNGC 8 cut(s) 65, 135, 183, 350, 954, 1023, 1266, 1412
BlpI GCTNAGC 1 cut(s) 35
BlsI GCNGC 8 cut(s) 66, 136, 184, 351, 955, 1024, 1267, 1413
Bme1390I CCNGG 2 cut(s) 450, 1044
Bme18I GGWCC 2 cut(s) 82, 1276
BmeT110I CYCGRG 1 cut(s) 193
BmgBI CACGTC 1 cut(s) 169
BmgT120I GGNCC 2 cut(s) 82, 1276
BmiI GGNNCC 2 cut(s) 219, 427
BmrFI CCNGG 2 cut(s) 450, 1044
BmrI ACTGGG 2 cut(s) 886, 1397
BmsI GCATC 1 cut(s) 1008
BmuI ACTGGG 2 cut(s) 886, 1397
BpiI GAAGAC 1 cut(s) 300
BpmI CTGGAG 1 cut(s) 791
Bpu10I CCTNAGC 1 cut(s) 264
Bpu1102I GCTNAGC 1 cut(s) 35
BpuEI CTTGAG 2 cut(s) 524, 1062
BpuMI CCSGG 1 cut(s) 450
BsaHI GRCGYC 2 cut(s) 6, 180
BsaI GGTCTC 2 cut(s) 492, 611
BsaJI CCNNGG 2 cut(s) 100, 449
BsaXI ACNNNNNCTCC 6 cut(s) 375, 405, 1398, 1428, 1484, 1514
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 899
Bse118I RCCGGY 3 cut(s) 79, 124, 188
Bse1I ACTGG 4 cut(s) 228, 607, 881, 1392
Bse21I CCTNAGG 1 cut(s) 1428
Bse3DI GCAATG 3 cut(s) 893, 1342, 1428
BseBI CCWGG 1 cut(s) 1044
BseDI CCNNGG 2 cut(s) 100, 449
BseGI GGATG 4 cut(s) 487, 999, 1320, 1464
BseLI CCNNNNNNNGG 2 cut(s) 105, 899
BseMI GCAATG 3 cut(s) 893, 1342, 1428
BseMII CTCAG 4 cut(s) 278, 1265, 1315, 1419
BseNI ACTGG 4 cut(s) 228, 607, 881, 1392
BsePI GCGCGC 1 cut(s) 30
BseRI GAGGAG 2 cut(s) 431, 1505
BseXI GCAGC 4 cut(s) 336, 940, 1034, 1423
BsgI GTGCAG 2 cut(s) 103, 1082
Bsh1236I CGCG 2 cut(s) 32, 46
BshFI GGCC 3 cut(s) 647, 753, 1110
BsiHKCI CYCGRG 1 cut(s) 193
BsiSI CCGG 4 cut(s) 80, 125, 189, 449
BslFI GGGAC 2 cut(s) 894, 1311
BslI CCNNNNNNNGG 2 cut(s) 105, 899
BsmAI GTCTC 4 cut(s) 448, 492, 582, 611
BsmFI GGGAC 2 cut(s) 894, 1311
BsnI GGCC 3 cut(s) 647, 753, 1110
Bso31I GGTCTC 2 cut(s) 492, 611
BsoBI CYCGRG 1 cut(s) 193
Bsp143I GATC 4 cut(s) 808, 1081, 1259, 1494
Bsp1720I GCTNAGC 1 cut(s) 35
BspACI CCGC 7 cut(s) 65, 105, 135, 173, 183, 1189, 1266
BspANI GGCC 3 cut(s) 647, 753, 1110
BspCNI CTCAG 4 cut(s) 277, 1264, 1314, 1420
BspFNI CGCG 2 cut(s) 32, 46
BspHI TCATGA 1 cut(s) 852
BspLI GGNNCC 2 cut(s) 219, 427
BspMAI CTGCAG 1 cut(s) 1413
BspMI ACCTGC 2 cut(s) 147, 259
BspPI GGATC 2 cut(s) 816, 1076
BspQI GCTCTTC 2 cut(s) 633, 936
BspTNI GGTCTC 2 cut(s) 492, 611
BsrDI GCAATG 3 cut(s) 893, 1342, 1428
BsrFI RCCGGY 3 cut(s) 79, 124, 188
BsrI ACTGG 4 cut(s) 228, 607, 881, 1392
BssAI RCCGGY 3 cut(s) 79, 124, 188
BssECI CCNNGG 2 cut(s) 100, 449
BssHII GCGCGC 1 cut(s) 30
BssMI GATC 4 cut(s) 808, 1081, 1259, 1494
BssNAI GTATAC 1 cut(s) 847
BssNI GRCGYC 2 cut(s) 6, 180
BssSI CACGAG 1 cut(s) 1026
BssT1I CCWWGG 1 cut(s) 100
Bst1107I GTATAC 1 cut(s) 847
Bst2BI CACGAG 1 cut(s) 1026
Bst2UI CCWGG 1 cut(s) 1044
Bst4CI ACNGT 5 cut(s) 253, 726, 795, 1055, 1280
Bst6I CTCTTC 5 cut(s) 633, 739, 936, 1192, 1212
BstACI GRCGYC 2 cut(s) 6, 180
BstC8I GCNNGC 6 cut(s) 32, 122, 584, 645, 865, 951
BstDEI CTNAG 7 cut(s) 35, 264, 659, 1251, 1301, 1428, 1571
BstF5I GGATG 4 cut(s) 487, 999, 1320, 1464
BstFNI CGCG 2 cut(s) 32, 46
BstHHI GCGC 4 cut(s) 32, 34, 48, 1555
BstKTI GATC 4 cut(s) 811, 1084, 1262, 1497
BstMAI GTCTC 4 cut(s) 448, 492, 582, 611
BstMBI GATC 4 cut(s) 808, 1081, 1259, 1494
BstMWI GCNNNNNNNGC 5 cut(s) 36, 45, 179, 310, 483
BstNI CCWGG 1 cut(s) 1044
BstSCI CCNGG 2 cut(s) 448, 1042
BstSFI CTRYAG 1 cut(s) 1409
BstUI CGCG 2 cut(s) 32, 46
BstV1I GCAGC 4 cut(s) 336, 940, 1034, 1423
BstV2I GAAGAC 1 cut(s) 300
BstX2I RGATCY 2 cut(s) 808, 1081
BstYI RGATCY 2 cut(s) 808, 1081
BstZ17I GTATAC 1 cut(s) 847
Bsu36I CCTNAGG 1 cut(s) 1428
BsuRI GGCC 3 cut(s) 647, 753, 1110
BtrI CACGTC 1 cut(s) 169
BtsCI GGATG 4 cut(s) 487, 999, 1320, 1464
BtsIMutI CAGTG 1 cut(s) 221
BveI ACCTGC 2 cut(s) 147, 259
Cac8I GCNNGC 6 cut(s) 32, 122, 584, 645, 865, 951
CciI TCATGA 1 cut(s) 852
CfoI GCGC 4 cut(s) 32, 34, 48, 1555
Cfr10I RCCGGY 3 cut(s) 79, 124, 188
Cfr13I GGNCC 2 cut(s) 82, 1276
CseI GACGC 3 cut(s) 14, 188, 355
Csp6I GTAC 3 cut(s) 683, 1011, 1097
CviAII CATG 5 cut(s) 478, 853, 935, 1288, 1393
CviQI GTAC 3 cut(s) 683, 1011, 1097
DdeI CTNAG 7 cut(s) 35, 264, 659, 1251, 1301, 1428, 1571
DpnI GATC 4 cut(s) 810, 1083, 1261, 1496
DpnII GATC 4 cut(s) 808, 1081, 1259, 1494
DraI TTTAAA 2 cut(s) 909, 1504
DrdI GACNNNNNNGTC 1 cut(s) 1283
DseDI GACNNNNNNGTC 1 cut(s) 1283
EaeI YGGCCR 2 cut(s) 645, 1108
Eam1104I CTCTTC 5 cut(s) 633, 739, 936, 1192, 1212
EarI CTCTTC 5 cut(s) 633, 739, 936, 1192, 1212
Eco130I CCWWGG 1 cut(s) 100
Eco31I GGTCTC 2 cut(s) 492, 611
Eco47I GGWCC 2 cut(s) 82, 1276
Eco57I CTGAAG 2 cut(s) 80, 648
Eco81I CCTNAGG 1 cut(s) 1428
Eco88I CYCGRG 1 cut(s) 193
EcoRI GAATTC 1 cut(s) 1181
EcoRII CCWGG 1 cut(s) 1042
EcoT14I CCWWGG 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 5 cut(s) 481, 856, 938, 1291, 1396
FaqI GGGAC 2 cut(s) 894, 1311
FatI CATG 5 cut(s) 477, 852, 934, 1287, 1392
FauI CCCGC 1 cut(s) 98
FblI GTMKAC 2 cut(s) 846, 1129
Fnu4HI GCNGC 8 cut(s) 65, 135, 183, 350, 954, 1023, 1266, 1412
FokI GGATG 4 cut(s) 494, 986, 1307, 1451
Fsp4HI GCNGC 8 cut(s) 65, 135, 183, 350, 954, 1023, 1266, 1412
FspBI CTAG 3 cut(s) 95, 206, 297
GlaI GCGC 4 cut(s) 31, 33, 47, 1554
GluI GCNGC 8 cut(s) 65, 135, 183, 350, 954, 1023, 1266, 1412
GsuI CTGGAG 1 cut(s) 791
HaeIII GGCC 3 cut(s) 647, 753, 1110
HapII CCGG 4 cut(s) 80, 125, 189, 449
HgaI GACGC 3 cut(s) 14, 188, 355
HhaI GCGC 4 cut(s) 32, 34, 48, 1555
Hin1I GRCGYC 2 cut(s) 6, 180
Hin1II CATG 5 cut(s) 481, 856, 938, 1291, 1396
Hin6I GCGC 4 cut(s) 30, 32, 46, 1553
HinP1I GCGC 4 cut(s) 30, 32, 46, 1553
HincII GTYRAC 2 cut(s) 871, 1051
HindII GTYRAC 2 cut(s) 871, 1051
HindIII AAGCTT 3 cut(s) 590, 966, 1170
HinfI GANTC 6 cut(s) 11, 664, 675, 1032, 1299, 1398
HpaII CCGG 4 cut(s) 80, 125, 189, 449
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 6 cut(s) 178, 847, 871, 1031, 1051, 1130
Hpy188I TCNGA 8 cut(s) 55, 76, 239, 294, 1228, 1254, 1403, 1574
Hpy188III TCNNGA 5 cut(s) 553, 770, 853, 1079, 1211
Hpy8I GTNNAC 6 cut(s) 178, 847, 871, 1031, 1051, 1130
Hpy99I CGWCG 2 cut(s) 243, 349
HpyAV CCTTC 5 cut(s) 220, 346, 416, 756, 1013
HpyCH4III ACNGT 5 cut(s) 253, 726, 795, 1055, 1280
HpyCH4IV ACGT 2 cut(s) 168, 324
HpyCH4V TGCA 9 cut(s) 120, 156, 956, 1022, 1063, 1142, 1328, 1411, 1421
HpyF10VI GCNNNNNNNGC 5 cut(s) 36, 45, 179, 310, 483
HpyF3I CTNAG 7 cut(s) 35, 264, 659, 1251, 1301, 1428, 1571
HpySE526I ACGT 2 cut(s) 168, 324
Hsp92I GRCGYC 2 cut(s) 6, 180
Hsp92II CATG 5 cut(s) 481, 856, 938, 1291, 1396
HspAI GCGC 4 cut(s) 30, 32, 46, 1553
Kzo9I GATC 4 cut(s) 808, 1081, 1259, 1494
LguI GCTCTTC 2 cut(s) 633, 936
LmnI GCTCC 3 cut(s) 301, 425, 1419
Lsp1109I GCAGC 4 cut(s) 336, 940, 1034, 1423
LweI GCATC 1 cut(s) 1008
MaeI CTAG 3 cut(s) 95, 206, 297
MaeII ACGT 2 cut(s) 168, 324
MaeIII GTNAC 1 cut(s) 795
MalI GATC 4 cut(s) 810, 1083, 1261, 1496
MboI GATC 4 cut(s) 808, 1081, 1259, 1494
MboII GAAGA 8 cut(s) 300, 650, 726, 881, 923, 952, 1199, 1209
MfeI CAATTG 1 cut(s) 361
MflI RGATCY 2 cut(s) 808, 1081
MlsI TGGCCA 1 cut(s) 647
MluCI AATT 6 cut(s) 355, 361, 430, 706, 1181, 1377
MluNI TGGCCA 1 cut(s) 647
MlyI GAGTC 4 cut(s) 5, 684, 1026, 1293
MmeI TCCRAC 3 cut(s) 78, 262, 317
Mox20I TGGCCA 1 cut(s) 647
MscI TGGCCA 1 cut(s) 647
MseI TTAA 5 cut(s) 819, 908, 1473, 1503, 1529
Msp20I TGGCCA 1 cut(s) 647
MspI CCGG 4 cut(s) 80, 125, 189, 449
MspR9I CCNGG 2 cut(s) 450, 1044
MunI CAATTG 1 cut(s) 361
MvaI CCWGG 1 cut(s) 1044
MvnI CGCG 2 cut(s) 32, 46
MwoI GCNNNNNNNGC 5 cut(s) 36, 45, 179, 310, 483
NciI CCSGG 1 cut(s) 450
NdeII GATC 4 cut(s) 808, 1081, 1259, 1494
NlaIII CATG 5 cut(s) 481, 856, 938, 1291, 1396
NlaIV GGNNCC 2 cut(s) 219, 427
NmuCI GTSAC 1 cut(s) 795
PagI TCATGA 1 cut(s) 852
PaqCI CACCTGC 1 cut(s) 259
PauI GCGCGC 1 cut(s) 30
PciSI GCTCTTC 2 cut(s) 633, 936
PcsI WCGNNNNNNNCGW 1 cut(s) 350
PfeI GAWTC 2 cut(s) 664, 1398
PflMI CCANNNNNTGG 1 cut(s) 899
PkrI GCNGC 8 cut(s) 66, 136, 184, 351, 955, 1024, 1267, 1413
PleI GAGTC 4 cut(s) 5, 683, 1026, 1293
PpsI GAGTC 4 cut(s) 5, 683, 1026, 1293
Psp6I CCWGG 1 cut(s) 1042
PspGI CCWGG 1 cut(s) 1042
PspN4I GGNNCC 2 cut(s) 219, 427
PspPI GGNCC 2 cut(s) 82, 1276
PstI CTGCAG 1 cut(s) 1413
PsuI RGATCY 2 cut(s) 808, 1081
PteI GCGCGC 1 cut(s) 30
RsaI GTAC 3 cut(s) 684, 1012, 1098
RsaNI GTAC 3 cut(s) 683, 1011, 1097
SapI GCTCTTC 2 cut(s) 633, 936
SaqAI TTAA 5 cut(s) 819, 908, 1473, 1503, 1529
SatI GCNGC 8 cut(s) 65, 135, 183, 350, 954, 1023, 1266, 1412
Sau3AI GATC 4 cut(s) 808, 1081, 1259, 1494
Sau96I GGNCC 2 cut(s) 82, 1276
SchI GAGTC 4 cut(s) 5, 684, 1026, 1293
ScrFI CCNGG 2 cut(s) 450, 1044
SfaNI GCATC 1 cut(s) 1008
SfcI CTRYAG 1 cut(s) 1409
SinI GGWCC 2 cut(s) 82, 1276
SmlI CTYRAG 2 cut(s) 503, 1077
SmoI CTYRAG 2 cut(s) 503, 1077
Sse9I AATT 6 cut(s) 355, 361, 430, 706, 1181, 1377
SsiI CCGC 7 cut(s) 65, 105, 135, 173, 183, 1189, 1266
SspMI CTAG 3 cut(s) 95, 206, 297
StyD4I CCNGG 2 cut(s) 448, 1042
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 5 cut(s) 253, 726, 795, 1055, 1280
TaiI ACGT 2 cut(s) 171, 327
TaqI TCGA 6 cut(s) 87, 111, 344, 678, 701, 1035
TasI AATT 6 cut(s) 355, 361, 430, 706, 1181, 1377
TatI WGTACW 1 cut(s) 1010
TauI GCSGC 4 cut(s) 67, 137, 185, 1268
TfiI GAWTC 2 cut(s) 664, 1398
Tru1I TTAA 5 cut(s) 819, 908, 1473, 1503, 1529
Tru9I TTAA 5 cut(s) 819, 908, 1473, 1503, 1529
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 1 cut(s) 795
TseI GCWGC 4 cut(s) 349, 953, 1022, 1411
Tsp45I GTSAC 1 cut(s) 795
TspDTI ATGAA 5 cut(s) 328, 841, 923, 959, 1453
TspGWI ACGGA 1 cut(s) 1313
TspRI CASTG 1 cut(s) 228
Van91I CCANNNNNTGG 1 cut(s) 899
VpaK11BI GGWCC 2 cut(s) 82, 1276
XapI RAATTY 2 cut(s) 355, 1181
XcmI CCANNNNNNNNNTGG 1 cut(s) 766
XmiI GTMKAC 2 cut(s) 846, 1129
XspI CTAG 3 cut(s) 95, 206, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.