Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005347

Physical Location & Seq

Genomic Coordinates Reverse (-)

22584588 .. 22585648

Gene Structure 1061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g20540.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTATCACATTTTATTTGAACCAAAGTTGGGCCGAACCAAACCGCACGTGGATCGCCCGGTTAGGCGTTTTGATCCTAACGGTGCGAACCGCGAAGAAAAACAGAAAGCCATGGACGCCGACTCTTCCAACCGAAACAGTGCCTTGAGCGACACCCGCTTCTCCGACCTGAAGCCGCCGCTCTCCGAACCGGTTCTGGAAGCCCTGTCCGAAGGCGGGTTCGAGTTCTGCACTCCGGTTCAAGCCGCCACAATCCCCTTGCTATGCAGCTTCAAGGACGTGGCGGTGGACGCCGCCACCGGCTCAGGCAAAACCCTAGCATTCGTGGTCCCGATGGTTGAGATACTCCGGCGAGCTTCAACCACTCCAAAACCCCAAGAGGTGATGGGAATGATTATATCTCCGACTAGGGAGCTGGCTTCGCAAATATACAATGTCGCGAAACCCTTCATTTCGACGCTGCCGAATATCAAGTGTGCGCTTTTGGTTGGCGGAGGGCAAGTGAAATCAGACATGAAACAAATTGAGGAGGAAGGAGGCAACTTGTTGATCGGCACACCGGGAAGACTATTCGACATTATGGAACGCATTGATGGCTTGGATTTGCGGAACCTTGAAATTTTGATTTTAGATGAGGCTGATAGGCTATTGGATATGGGGTTCCAGAAGCAGATAAATGATATTATGTCTCGATTACCTAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003727 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008187 GO:0008266 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

236

Amino Acids

25.95

Weight (kDa)

5.57

Isoelectric Point (pI)

50.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71280 AT1G71280 AT1G71370 AT5G05450
fragaria_vesca	FvH4_6g01590 FvH4_6g01590 FvH4_6g01590 FvH4_6g03480 FvH4_7g25130 FvH4_7g25130 FvH4_7g25130
malus_domestica	MD01G1158100.v1.1 MD07G1226800.v1.1
prunus_persica	Prupe.2G256400_v2.0.a1
pyrus_communis	pycom01g17480 pycom07g20540
rosa_chinensis	RchiOBHm_Chr1g0371021 RchiOBHm_Chr1g0371031
rosa_laevigata	RLG00000026991
rosa_multiflora	Rmu_co8450187.1_g000001 Rmu_sc0001018.1_g000027 Rmu_sc0003272.1_g000004
rosa_roxburghii	Rroxscaffold_4G00286030
rosa_rugosa	Rorug01G0360900
rosa_samantha	Rh1AG371200 Rh1BG334700 Rh1CG348000 Rh1DG365900
rosa_wichuraiana	Rw1G032650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	181
AccII	CGCG	2 cut(s)	93, 440
AclWI	GGATC	2 cut(s)	60, 68
AcsI	RAATTY	1 cut(s)	618
AcuI	CTGAAG	1 cut(s)	191
AcvI	CACGTG	1 cut(s)	49
AcyI	GRCGYC	2 cut(s)	117, 291
AfiI	CCNNNNNNNGG	2 cut(s)	29, 216
AgeI	ACCGGT	1 cut(s)	190
AgsI	TTSAA	5 cut(s)	20, 242, 274, 360, 617
AjiI	CACGTC	1 cut(s)	280
AloI	GAACNNNNNNTCC	2 cut(s)	644, 676
AluBI	AGCT	4 cut(s)	270, 356, 415, 703
AluI	AGCT	4 cut(s)	270, 356, 415, 703
Alw26I	GTCTC	1 cut(s)	693
AlwI	GGATC	2 cut(s)	60, 68
AoxI	GGCC	1 cut(s)	31
ApeKI	GCWGC	2 cut(s)	267, 460
ApoI	RAATTY	1 cut(s)	618
AsiGI	ACCGGT	1 cut(s)	190
Asp700I	GAANNNNTTC	2 cut(s)	192, 446
AspLEI	GCGC	1 cut(s)	481
AspS9I	GGNCC	2 cut(s)	31, 328
AsuC2I	CCSGG	2 cut(s)	59, 561
AsuHPI	GGTGA	1 cut(s)	394
AvaII	GGWCC	1 cut(s)	328
BbrPI	CACGTG	1 cut(s)	49
BbsI	GAAGAC	1 cut(s)	571
BbvI	GCAGC	2 cut(s)	279, 447
BccI	CCATC	3 cut(s)	328, 379, 587
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BcnI	CCSGG	2 cut(s)	59, 561
BcoDI	GTCTC	1 cut(s)	693
BfaI	CTAG	2 cut(s)	317, 408
BisI	GCNGC	6 cut(s)	176, 179, 246, 268, 294, 461
BlsI	GCNGC	6 cut(s)	177, 180, 247, 269, 295, 462
Bme1390I	CCNGG	2 cut(s)	59, 561
Bme18I	GGWCC	1 cut(s)	328
BmgBI	CACGTC	1 cut(s)	280
BmgT120I	GGNCC	2 cut(s)	31, 328
BmiI	GGNNCC	3 cut(s)	330, 611, 662
BmrFI	CCNGG	2 cut(s)	59, 561
BpiI	GAAGAC	1 cut(s)	571
Bpu10I	CCTNAGC	2 cut(s)	304, 699
BpuEI	CTTGAG	1 cut(s)	166
BpuMI	CCSGG	2 cut(s)	59, 561
BsaAI	YACGTR	1 cut(s)	49
BsaHI	GRCGYC	2 cut(s)	117, 291
BsaJI	CCNNGG	1 cut(s)	111
BsaWI	WCCGGW	2 cut(s)	190, 235
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 216
Bse118I	RCCGGY	2 cut(s)	190, 299
BseDI	CCNNGG	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	29, 216
BseMII	CTCAG	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	542
BseXI	GCAGC	2 cut(s)	279, 447
BsgI	GTGCAG	1 cut(s)	214
Bsh1236I	CGCG	2 cut(s)	93, 440
BshFI	GGCC	1 cut(s)	33
BshTI	ACCGGT	1 cut(s)	190
BsiSI	CCGG	6 cut(s)	59, 191, 236, 300, 349, 560
BslFI	GGGAC	1 cut(s)	314
BslI	CCNNNNNNNGG	2 cut(s)	29, 216
BsmAI	GTCTC	1 cut(s)	693
BsmFI	GGGAC	1 cut(s)	314
BsmI	GAATGC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	33
Bsp143I	GATC	3 cut(s)	52, 73, 549
Bsp19I	CCATGG	1 cut(s)	111
Bsp68I	TCGCGA	1 cut(s)	440
BspANI	GGCC	1 cut(s)	33
BspCNI	CTCAG	1 cut(s)	317
BspFNI	CGCG	2 cut(s)	93, 440
BspLI	GGNNCC	3 cut(s)	330, 611, 662
BspPI	GGATC	2 cut(s)	60, 68
BsrBI	CCGCTC	1 cut(s)	181
BsrFI	RCCGGY	2 cut(s)	190, 299
BssAI	RCCGGY	2 cut(s)	190, 299
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	3 cut(s)	52, 73, 549
BssNI	GRCGYC	2 cut(s)	117, 291
BssT1I	CCWWGG	1 cut(s)	111
Bst4CI	ACNGT	2 cut(s)	83, 140
Bst6I	CTCTTC	1 cut(s)	130
BstACI	GRCGYC	2 cut(s)	117, 291
BstBAI	YACGTR	1 cut(s)	49
BstC8I	GCNNGC	2 cut(s)	354, 417
BstDEI	CTNAG	2 cut(s)	304, 699
BstDSI	CCRYGG	1 cut(s)	111
BstFNI	CGCG	2 cut(s)	93, 440
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	3 cut(s)	55, 76, 552
BstMAI	GTCTC	1 cut(s)	693
BstMBI	GATC	3 cut(s)	52, 73, 549
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 156, 290, 421, 594
BstSCI	CCNGG	2 cut(s)	57, 559
BstUI	CGCG	2 cut(s)	93, 440
BstV1I	GCAGC	2 cut(s)	279, 447
BstV2I	GAAGAC	1 cut(s)	571
BsuRI	GGCC	1 cut(s)	33
BtgI	CCRYGG	1 cut(s)	111
BtrI	CACGTC	1 cut(s)	280
BtsIMutI	CAGTG	1 cut(s)	145
BtuMI	TCGCGA	1 cut(s)	440
Cac8I	GCNNGC	2 cut(s)	354, 417
CfoI	GCGC	1 cut(s)	481
Cfr10I	RCCGGY	2 cut(s)	190, 299
Cfr13I	GGNCC	2 cut(s)	31, 328
CseI	GACGC	3 cut(s)	125, 299, 466
CspAI	ACCGGT	1 cut(s)	190
CviAII	CATG	2 cut(s)	112, 514
DdeI	CTNAG	2 cut(s)	304, 699
DpnI	GATC	3 cut(s)	54, 75, 551
DpnII	GATC	3 cut(s)	52, 73, 549
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
EciI	GGCGGA	1 cut(s)	507
Eco130I	CCWWGG	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	191
Eco72I	CACGTG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	2 cut(s)	115, 517
FaiI	YATR	8 cut(s)	113, 265, 398, 430, 515, 581, 656, 686
FaqI	GGGAC	1 cut(s)	314
FatI	CATG	2 cut(s)	111, 513
FauI	CCCGC	2 cut(s)	164, 209
Fnu4HI	GCNGC	6 cut(s)	176, 179, 246, 268, 294, 461
Fsp4HI	GCNGC	6 cut(s)	176, 179, 246, 268, 294, 461
FspBI	CTAG	2 cut(s)	317, 408
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	6 cut(s)	176, 179, 246, 268, 294, 461
HaeIII	GGCC	1 cut(s)	33
HapII	CCGG	6 cut(s)	59, 191, 236, 300, 349, 560
HgaI	GACGC	3 cut(s)	125, 299, 466
HhaI	GCGC	1 cut(s)	481
Hin1I	GRCGYC	2 cut(s)	117, 291
Hin1II	CATG	2 cut(s)	115, 517
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HindIII	AAGCTT	1 cut(s)	701
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	6 cut(s)	59, 191, 236, 300, 349, 560
HphI	GGTGA	1 cut(s)	394
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	5 cut(s)	166, 187, 211, 405, 511
Hpy188III	TCNNGA	5 cut(s)	197, 331, 439, 664, 690
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	1 cut(s)	460
HpyAV	CCTTC	3 cut(s)	206, 457, 527
HpyCH4III	ACNGT	2 cut(s)	83, 140
HpyCH4IV	ACGT	2 cut(s)	48, 279
HpyCH4V	TGCA	2 cut(s)	231, 267
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 156, 290, 421, 594
HpyF3I	CTNAG	2 cut(s)	304, 699
HpySE526I	ACGT	2 cut(s)	48, 279
Hsp92I	GRCGYC	2 cut(s)	117, 291
Hsp92II	CATG	2 cut(s)	115, 517
HspAI	GCGC	1 cut(s)	479
Kzo9I	GATC	3 cut(s)	52, 73, 549
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	2 cut(s)	279, 447
MaeI	CTAG	2 cut(s)	317, 408
MaeII	ACGT	2 cut(s)	48, 279
MalI	GATC	3 cut(s)	54, 75, 551
MbiI	CCGCTC	1 cut(s)	181
MboI	GATC	3 cut(s)	52, 73, 549
MboII	GAAGA	3 cut(s)	107, 117, 576
MluCI	AATT	2 cut(s)	522, 618
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	3 cut(s)	153, 189, 428
MnlI	CCTC	6 cut(s)	373, 488, 520, 523, 530, 628
MroXI	GAANNNNTTC	2 cut(s)	192, 446
MspI	CCGG	6 cut(s)	59, 191, 236, 300, 349, 560
MspR9I	CCNGG	2 cut(s)	59, 561
Mva1269I	GAATGC	1 cut(s)	320
MvnI	CGCG	2 cut(s)	93, 440
MwoI	GCNNNNNNNGC	5 cut(s)	116, 156, 290, 421, 594
NciI	CCSGG	2 cut(s)	59, 561
NcoI	CCATGG	1 cut(s)	111
NdeII	GATC	3 cut(s)	52, 73, 549
NlaIII	CATG	2 cut(s)	115, 517
NlaIV	GGNNCC	3 cut(s)	330, 611, 662
NruI	TCGCGA	1 cut(s)	440
PcsI	WCGNNNNNNNCGW	1 cut(s)	461
PctI	GAATGC	1 cut(s)	320
PdmI	GAANNNNTTC	2 cut(s)	192, 446
PinAI	ACCGGT	1 cut(s)	190
PkrI	GCNGC	6 cut(s)	177, 180, 247, 269, 295, 462
PleI	GAGTC	1 cut(s)	116
PmaCI	CACGTG	1 cut(s)	49
PmlI	CACGTG	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	116
Ppu21I	YACGTR	1 cut(s)	49
PspCI	CACGTG	1 cut(s)	49
PspN4I	GGNNCC	3 cut(s)	330, 611, 662
PspPI	GGNCC	2 cut(s)	31, 328
RruI	TCGCGA	1 cut(s)	440
SatI	GCNGC	6 cut(s)	176, 179, 246, 268, 294, 461
Sau3AI	GATC	3 cut(s)	52, 73, 549
Sau96I	GGNCC	2 cut(s)	31, 328
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	59, 561
SinI	GGWCC	1 cut(s)	328
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
Sse9I	AATT	2 cut(s)	522, 618
SspMI	CTAG	2 cut(s)	317, 408
StyD4I	CCNGG	2 cut(s)	57, 559
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	2 cut(s)	83, 140
TaiI	ACGT	2 cut(s)	51, 282
TaqI	TCGA	4 cut(s)	222, 455, 573, 691
TasI	AATT	2 cut(s)	522, 618
TauI	GCSGC	4 cut(s)	178, 181, 248, 296
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	2 cut(s)	267, 460
TspDTI	ATGAA	2 cut(s)	439, 530
TspRI	CASTG	1 cut(s)	145
VpaK11BI	GGWCC	1 cut(s)	328
XapI	RAATTY	1 cut(s)	618
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XmnI	GAANNNNTTC	2 cut(s)	192, 446
XspI	CTAG	2 cut(s)	317, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.