Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005347

Physical Location & Seq

Genomic Coordinates Forward (+)

47655380 .. 47657268

Gene Structure 1889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0360900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGTGGCTGTGAAGAAAACCAAGAAGACCCATGAGTCTATCAACAACAGGCTCGCTCTTGTCATGAAGAGTGGCAAGTACACTCTGGGCTACAAGACCGTCATCGACACTCTTCGTAGCTTCAAAGATAGGAAGCTGATTATAATCTCGAACAATTGCCCTCCTCTGAGAAAGTCGGAGATTGAGTACTACGCGATGCTTGCCAAGGTTAGAGTTCACCACTACAATGGAATTGGTGGAGCTCTAAAAGTCCCTTCTCTGAGTTTACCATGGGCCATGGAGCAACACCTTCAGTCATCAACAATCACAAAGTCACTCAGACGCGTCTTTGTAGTGGCAGTTCTTTCCAAACCAAAAGTGTTTGGTAGATTAGTGAATGAATCAAAGTTTGGGATTCTGATAATGTCATCTCATGATAATGGTGCATTGCAAGTTAGGGTCAGCACTCAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003727 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008187 GO:0008266 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

151

Amino Acids

16.99

Weight (kDa)

10.38

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	13 - 76	6.4e-11	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71280 AT1G71280 AT1G71370 AT5G05450
fragaria_vesca	FvH4_6g01590 FvH4_6g01590 FvH4_6g01590 FvH4_6g03480 FvH4_7g25130 FvH4_7g25130 FvH4_7g25130
malus_domestica	MD01G1158100.v1.1 MD07G1226800.v1.1
prunus_persica	Prupe.2G256400_v2.0.a1
pyrus_communis	pycom01g17480 pycom07g20540
rosa_chinensis	RchiOBHm_Chr1g0371021 RchiOBHm_Chr1g0371031
rosa_laevigata	RLG00000026991
rosa_multiflora	Rmu_co8450187.1_g000001 Rmu_sc0001018.1_g000027 Rmu_sc0003272.1_g000004
rosa_roxburghii	Rroxscaffold_4G00286030
rosa_rugosa	Rorug01G0360900
rosa_samantha	Rh1AG371200 Rh1BG334700 Rh1CG348000 Rh1DG365900
rosa_wichuraiana	Rw1G032650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	143
AasI	GACNNNNNNGTC	1 cut(s)	34
AccII	CGCG	2 cut(s)	194, 324
AcuI	CTGAAG	1 cut(s)	275
AfaI	GTAC	2 cut(s)	80, 188
AflIII	ACRYGT	1 cut(s)	322
AgsI	TTSAA	1 cut(s)	124
AjuI	GAANNNNNNNTTGG	2 cut(s)	372, 404
AluBI	AGCT	3 cut(s)	120, 136, 242
AluI	AGCT	3 cut(s)	120, 136, 242
Alw21I	GWGCWC	1 cut(s)	244
AoxI	GGCC	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	273
AsuHPI	GGTGA	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	244
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	244
BmcAI	AGTACT	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	273
BmsI	GCATC	1 cut(s)	186
BpiI	GAAGAC	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	143
BsaJI	CCNNGG	3 cut(s)	204, 269, 276
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bse3DI	GCAATG	1 cut(s)	425
Bse8I	GATNNNNATC	1 cut(s)	143
BseDI	CCNNGG	3 cut(s)	204, 269, 276
BseJI	GATNNNNATC	1 cut(s)	143
BseMI	GCAATG	1 cut(s)	425
BseMII	CTCAG	3 cut(s)	158, 251, 331
BseRI	GAGGAG	1 cut(s)	153
Bsh1236I	CGCG	2 cut(s)	194, 324
BshFI	GGCC	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	275
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp19I	CCATGG	2 cut(s)	269, 276
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	3 cut(s)	159, 252, 330
BspFNI	CGCG	2 cut(s)	194, 324
BspHI	TCATGA	2 cut(s)	63, 412
BsrDI	GCAATG	1 cut(s)	425
BssECI	CCNNGG	3 cut(s)	204, 269, 276
BssT1I	CCWWGG	3 cut(s)	204, 269, 276
Bst4CI	ACNGT	1 cut(s)	100
Bst6I	CTCTTC	2 cut(s)	62, 117
BstC8I	GCNNGC	2 cut(s)	54, 201
BstDEI	CTNAG	4 cut(s)	167, 260, 317, 447
BstDSI	CCRYGG	2 cut(s)	269, 276
BstFNI	CGCG	2 cut(s)	194, 324
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstUI	CGCG	2 cut(s)	194, 324
BstV2I	GAAGAC	1 cut(s)	32
BstXI	CCANNNNNNTGG	1 cut(s)	227
BsuRI	GGCC	1 cut(s)	275
BtgI	CCRYGG	2 cut(s)	269, 276
BtgZI	GCGATG	1 cut(s)	209
Cac8I	GCNNGC	2 cut(s)	54, 201
CciI	TCATGA	2 cut(s)	63, 412
Cfr13I	GGNCC	1 cut(s)	273
CseI	GACGC	2 cut(s)	313, 330
Csp6I	GTAC	2 cut(s)	79, 187
CviAII	CATG	5 cut(s)	32, 64, 270, 277, 413
CviJI	RGCY	7 cut(s)	8, 52, 90, 120, 136, 242, 275
CviKI_1	RGCY	7 cut(s)	8, 52, 90, 120, 136, 242, 275
CviQI	GTAC	2 cut(s)	79, 187
DdeI	CTNAG	4 cut(s)	167, 260, 317, 447
DrdI	GACNNNNNNGTC	1 cut(s)	34
DseDI	GACNNNNNNGTC	1 cut(s)	34
Eam1104I	CTCTTC	2 cut(s)	62, 117
EarI	CTCTTC	2 cut(s)	62, 117
Ecl136II	GAGCTC	1 cut(s)	242
Eco130I	CCWWGG	3 cut(s)	204, 269, 276
Eco24I	GRGCYC	1 cut(s)	244
Eco53kI	GAGCTC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	275
EcoICRI	GAGCTC	1 cut(s)	242
EcoT14I	CCWWGG	3 cut(s)	204, 269, 276
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	3 cut(s)	204, 269, 276
FaeI	CATG	5 cut(s)	35, 67, 273, 280, 416
FaiI	YATR	6 cut(s)	33, 65, 143, 271, 278, 414
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	5 cut(s)	31, 63, 269, 276, 412
FriOI	GRGCYC	1 cut(s)	244
HaeIII	GGCC	1 cut(s)	275
HgaI	GACGC	2 cut(s)	313, 330
Hin1II	CATG	5 cut(s)	35, 67, 273, 280, 416
HinfI	GANTC	3 cut(s)	35, 380, 394
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	3 cut(s)	81, 217, 266
Hpy188I	TCNGA	5 cut(s)	168, 178, 261, 320, 399
Hpy188III	TCNNGA	3 cut(s)	64, 148, 413
Hpy8I	GTNNAC	3 cut(s)	81, 217, 266
HpyAV	CCTTC	2 cut(s)	264, 299
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	2 cut(s)	425, 430
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	4 cut(s)	167, 260, 317, 447
Hsp92II	CATG	5 cut(s)	35, 67, 273, 280, 416
LmnI	GCTCC	2 cut(s)	239, 280
LpnPI	CCDG	2 cut(s)	34, 71
LweI	GCATC	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	312
MboII	GAAGA	4 cut(s)	25, 37, 79, 104
MfeI	CAATTG	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	2 cut(s)	154, 231
MluI	ACGCGT	1 cut(s)	322
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	2 cut(s)	171, 174
MslI	CAYNNNNRTG	2 cut(s)	225, 417
MunI	CAATTG	1 cut(s)	154
MvnI	CGCG	2 cut(s)	194, 324
MwoI	GCNNNNNNNGC	1 cut(s)	200
NcoI	CCATGG	2 cut(s)	269, 276
NlaIII	CATG	5 cut(s)	35, 67, 273, 280, 416
NmuCI	GTSAC	1 cut(s)	312
PagI	TCATGA	2 cut(s)	63, 412
PfeI	GAWTC	2 cut(s)	380, 394
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PsiI	TTATAA	1 cut(s)	143
Psp124BI	GAGCTC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	273
PsrI	GAACNNNNNNTAC	2 cut(s)	324, 356
RsaI	GTAC	2 cut(s)	80, 188
RsaNI	GTAC	2 cut(s)	79, 187
RseI	CAYNNNNRTG	2 cut(s)	225, 417
SacI	GAGCTC	1 cut(s)	244
Sau96I	GGNCC	1 cut(s)	273
ScaI	AGTACT	1 cut(s)	188
SchI	GAGTC	1 cut(s)	44
SduI	GDGCHC	1 cut(s)	244
SetI	ASST	5 cut(s)	122, 138, 210, 244, 291
SfaNI	GCATC	1 cut(s)	186
SmiMI	CAYNNNNRTG	2 cut(s)	225, 417
Sse9I	AATT	2 cut(s)	154, 231
SstI	GAGCTC	1 cut(s)	244
StyI	CCWWGG	3 cut(s)	204, 269, 276
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	2 cut(s)	105, 149
TasI	AATT	2 cut(s)	154, 231
TatI	WGTACW	2 cut(s)	78, 186
TfiI	GAWTC	2 cut(s)	380, 394
TseFI	GTSAC	1 cut(s)	312
Tsp45I	GTSAC	1 cut(s)	312
TspDTI	ATGAA	2 cut(s)	80, 393
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.