Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005347

Physical Location & Seq

Genomic Coordinates Reverse (-)

60389258 .. 60392004

Gene Structure 2747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59513

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGTCTCATTTCCTTTATATGGAGTGTGAGGCAGACAAGAAGCCGTCGCAGCTTGTGGATATCCTTGTTAAGAATAAGTCTCACAAGACCATAGTGTACTTCATGACTTGTGCTTGTGTTGACTACTGGGGAGTTGTTCTTCCATGCCTTGCTCTGTTGAAGGATTTCAATCTGATTGCTCTCCATGGGAAGATGAAACAGACCGCAAGGGACAAAGCTCTAGCCTCATTTACAGCTCTCTCAAGTGGTATCCTTCTATGCACTGATGTTGCAGCTCGTGGACTTGACATTCCGGGTGTTGACTGTATAGTGCAGTATGATACACCTCAAGATCCAAATGTTTTCGTGCATAGAGTTGGCAGAACAGCACGTATGGGTAGACAAGGAAGTGCAATTGTTTTCCTGTTACCAAAGGAGGAAGCTTATGTGGAATTCCTGCGGATAAGAAGAGTTCCTCTTCAAGAAAGGATATGTCCAGATGATGTCGCTGATGTTGTTCCTCAGATACGATCTGCTGCAAAAAAAGACCGTGATATCATGGAAAAGGGCATGAGGGCTTTTGTTTCTTACATCCGTGCATATAAAGAACACCACTGCTCCTACATTTTCAGGTGGAAAGAACTTGAAATTGGGAAGTTGGGCATGGGATTTGGACTACTACAGCTCCCTGCAATGCCTGAGGTAAAGCACAACACACTTTCCACGGAGGGTTTCACCCCTGTTGCAGACATCAACTTGGAGGAGATCAAATATAAGGACAAATCTCGTGAGAAGCAAAGAAGGAAGAATCTGCTAGCAAAGAAGGAGGCAAAAAAGCAAGAACCTAAACCTGAAAAAACAAAAAAAAACCCAAGTGCTAAAGCTAATGAGATGAAGAAGAAAACAGCTAAACAAAGACGTGCTGCGCAGACGGTTGAAGATGCAGATGAGTTGACTAGAGAATATCGCCTGCTGAAAAAGCTGAAAAAGGGGACTATCGATGAAACTGAGTTTGCCAAGTTGACAGGAACTGAGGACTTACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003727 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008187 GO:0008266 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

341

Amino Acids

38.88

Weight (kDa)

9.36

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	14 - 126	1.3e-25	Helicase conserved C-terminal domain
CTE_SPB4	PF13959	176 - 225	4.7e-19	ATP-dependent rRNA helicase SPB4-like, C-terminal extension

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71280 AT1G71280 AT1G71370 AT5G05450
fragaria_vesca	FvH4_6g01590 FvH4_6g01590 FvH4_6g01590 FvH4_6g03480 FvH4_7g25130 FvH4_7g25130 FvH4_7g25130
malus_domestica	MD01G1158100.v1.1 MD07G1226800.v1.1
prunus_persica	Prupe.2G256400_v2.0.a1
pyrus_communis	pycom01g17480 pycom07g20540
rosa_chinensis	RchiOBHm_Chr1g0371021 RchiOBHm_Chr1g0371031
rosa_laevigata	RLG00000026991
rosa_multiflora	Rmu_co8450187.1_g000001 Rmu_sc0001018.1_g000027 Rmu_sc0003272.1_g000004
rosa_roxburghii	Rroxscaffold_4G00286030
rosa_rugosa	Rorug01G0360900
rosa_samantha	Rh1AG371200 Rh1BG334700 Rh1CG348000 Rh1DG365900
rosa_wichuraiana	Rw1G032650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	906
AccI	GTMKAC	1 cut(s)	379
AciI	CCGC	2 cut(s)	204, 439
AclWI	GGATC	1 cut(s)	326
AcsI	RAATTY	1 cut(s)	431
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	5 cut(s)	160, 169, 461, 626, 917
AjiI	CACGTC	1 cut(s)	899
AjuI	GAANNNNNNNTTGG	2 cut(s)	612, 644
AluBI	AGCT	9 cut(s)	52, 218, 236, 275, 422, 664, 863, 887, 961
AluI	AGCT	9 cut(s)	52, 218, 236, 275, 422, 664, 863, 887, 961
Alw26I	GTCTC	2 cut(s)	9, 84
AlwI	GGATC	1 cut(s)	326
AlwNI	CAGNNNCTG	1 cut(s)	1010
ApeKI	GCWGC	4 cut(s)	49, 272, 515, 902
ApoI	RAATTY	1 cut(s)	431
Asp700I	GAANNNNTTC	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	907
AsuC2I	CCSGG	1 cut(s)	294
AsuHPI	GGTGA	1 cut(s)	706
AsuNHI	GCTAGC	1 cut(s)	793
AxyI	CCTNAGG	1 cut(s)	678
BauI	CACGAG	2 cut(s)	276, 765
BbvI	GCAGC	4 cut(s)	61, 284, 502, 889
BceAI	ACGGC	1 cut(s)	28
BciVI	GTATCC	1 cut(s)	260
BcnI	CCSGG	1 cut(s)	294
BcoDI	GTCTC	2 cut(s)	9, 84
BfaI	CTAG	3 cut(s)	221, 794, 936
BfmI	CTRYAG	1 cut(s)	659
BfuI	GTATCC	1 cut(s)	260
BisI	GCNGC	4 cut(s)	50, 273, 516, 903
BlsI	GCNGC	4 cut(s)	51, 274, 517, 904
Bme1390I	CCNGG	1 cut(s)	294
BmgBI	CACGTC	1 cut(s)	899
BmrFI	CCNGG	1 cut(s)	294
BmrI	ACTGGG	1 cut(s)	136
BmsI	GCATC	1 cut(s)	910
BmtI	GCTAGC	1 cut(s)	797
BmuI	ACTGGG	1 cut(s)	136
BpuEI	CTTGAG	2 cut(s)	226, 312
BpuMI	CCSGG	1 cut(s)	294
Bsa29I	ATCGAT	1 cut(s)	978
BsaAI	YACGTR	1 cut(s)	371
BsaBI	GATNNNNATC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	184, 702
BsaXI	ACNNNNNCTCC	4 cut(s)	581, 611, 648, 678
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	131
Bse21I	CCTNAGG	1 cut(s)	678
Bse3DI	GCAATG	1 cut(s)	678
Bse8I	GATNNNNATC	1 cut(s)	168
BseCI	ATCGAT	1 cut(s)	978
BseDI	CCNNGG	2 cut(s)	184, 702
BseGI	GGATG	1 cut(s)	570
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMI	GCAATG	1 cut(s)	678
BseMII	CTCAG	4 cut(s)	515, 669, 978, 1002
BseNI	ACTGG	1 cut(s)	131
BseRI	GAGGAG	1 cut(s)	755
BseXI	GCAGC	4 cut(s)	61, 284, 502, 889
BsgI	GTGCAG	1 cut(s)	332
BshVI	ATCGAT	1 cut(s)	978
BsiSI	CCGG	1 cut(s)	293
BslFI	GGGAC	2 cut(s)	224, 985
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmAI	GTCTC	2 cut(s)	9, 84
BsmFI	GGGAC	2 cut(s)	224, 985
Bsp143I	GATC	3 cut(s)	331, 509, 744
Bsp19I	CCATGG	1 cut(s)	184
BspACI	CCGC	2 cut(s)	204, 439
BspCNI	CTCAG	4 cut(s)	514, 670, 979, 1003
BspDI	ATCGAT	1 cut(s)	978
BspHI	TCATGA	1 cut(s)	102
BspOI	GCTAGC	1 cut(s)	797
BspPI	GGATC	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	678
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	184, 702
BssMI	GATC	3 cut(s)	331, 509, 744
BssSI	CACGAG	2 cut(s)	276, 765
BssT1I	CCWWGG	1 cut(s)	184
Bst2BI	CACGAG	2 cut(s)	276, 765
Bst4CI	ACNGT	3 cut(s)	305, 530, 913
Bst6I	CTCTTC	2 cut(s)	442, 462
BstBAI	YACGTR	1 cut(s)	371
BstC8I	GCNNGC	2 cut(s)	795, 950
BstDEI	CTNAG	4 cut(s)	501, 678, 987, 1011
BstDSI	CCRYGG	2 cut(s)	184, 702
BstF5I	GGATG	1 cut(s)	570
BstHHI	GCGC	1 cut(s)	907
BstKTI	GATC	3 cut(s)	334, 512, 747
BstMAI	GTCTC	2 cut(s)	9, 84
BstMBI	GATC	3 cut(s)	331, 509, 744
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 958
BstSCI	CCNGG	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	659
BstV1I	GCAGC	4 cut(s)	61, 284, 502, 889
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
Bsu15I	ATCGAT	1 cut(s)	978
Bsu36I	CCTNAGG	1 cut(s)	678
BsuI	GTATCC	1 cut(s)	260
BsuTUI	ATCGAT	1 cut(s)	978
BtgI	CCRYGG	2 cut(s)	184, 702
BtrI	CACGTC	1 cut(s)	899
BtsCI	GGATG	1 cut(s)	570
BtsI	GCAGTG	1 cut(s)	592
BtsIMutI	CAGTG	2 cut(s)	261, 592
Cac8I	GCNNGC	2 cut(s)	795, 950
CaiI	CAGNNNCTG	1 cut(s)	1010
CciI	TCATGA	1 cut(s)	102
CfoI	GCGC	1 cut(s)	907
ClaI	ATCGAT	1 cut(s)	978
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	6 cut(s)	103, 144, 185, 538, 550, 643
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	4 cut(s)	501, 678, 987, 1011
DpnI	GATC	3 cut(s)	333, 511, 746
DpnII	GATC	3 cut(s)	331, 509, 744
Eam1104I	CTCTTC	2 cut(s)	442, 462
EarI	CTCTTC	2 cut(s)	442, 462
Eco130I	CCWWGG	1 cut(s)	184
Eco32I	GATATC	2 cut(s)	61, 535
Eco81I	CCTNAGG	1 cut(s)	678
EcoRI	GAATTC	1 cut(s)	431
EcoRV	GATATC	2 cut(s)	61, 535
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
FaeI	CATG	6 cut(s)	106, 147, 188, 541, 553, 646
FaqI	GGGAC	2 cut(s)	224, 985
FatI	CATG	6 cut(s)	102, 143, 184, 537, 549, 642
FblI	GTMKAC	1 cut(s)	379
Fnu4HI	GCNGC	4 cut(s)	50, 273, 516, 903
FokI	GGATG	1 cut(s)	557
Fsp4HI	GCNGC	4 cut(s)	50, 273, 516, 903
FspBI	CTAG	3 cut(s)	221, 794, 936
FspI	TGCGCA	1 cut(s)	906
GlaI	GCGC	1 cut(s)	906
GluI	GCNGC	4 cut(s)	50, 273, 516, 903
HapII	CCGG	1 cut(s)	293
HhaI	GCGC	1 cut(s)	907
Hin1II	CATG	6 cut(s)	106, 147, 188, 541, 553, 646
Hin6I	GCGC	1 cut(s)	905
HinP1I	GCGC	1 cut(s)	905
HincII	GTYRAC	4 cut(s)	121, 301, 933, 1002
HindII	GTYRAC	4 cut(s)	121, 301, 933, 1002
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	1 cut(s)	787
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	1 cut(s)	706
Hpy166II	GTNNAC	7 cut(s)	97, 121, 281, 301, 380, 933, 1002
Hpy188I	TCNGA	2 cut(s)	174, 504
Hpy188III	TCNNGA	5 cut(s)	103, 329, 461, 476, 767
Hpy8I	GTNNAC	7 cut(s)	97, 121, 281, 301, 380, 933, 1002
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	4 cut(s)	154, 263, 774, 796
HpyCH4III	ACNGT	3 cut(s)	305, 530, 913
HpyCH4IV	ACGT	2 cut(s)	370, 898
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 958
HpyF3I	CTNAG	4 cut(s)	501, 678, 987, 1011
HpySE526I	ACGT	2 cut(s)	370, 898
Hsp92II	CATG	6 cut(s)	106, 147, 188, 541, 553, 646
HspAI	GCGC	1 cut(s)	905
Kzo9I	GATC	3 cut(s)	331, 509, 744
LmnI	GCTCC	2 cut(s)	602, 669
Lsp1109I	GCAGC	4 cut(s)	61, 284, 502, 889
LweI	GCATC	1 cut(s)	910
MaeI	CTAG	3 cut(s)	221, 794, 936
MaeII	ACGT	2 cut(s)	370, 898
MaeIII	GTNAC	1 cut(s)	405
MalI	GATC	3 cut(s)	333, 511, 746
MboI	GATC	3 cut(s)	331, 509, 744
MboII	GAAGA	8 cut(s)	131, 202, 449, 459, 796, 886, 889, 929
MfeI	CAATTG	1 cut(s)	393
MflI	RGATCY	1 cut(s)	331
MluCI	AATT	3 cut(s)	393, 431, 627
MroXI	GAANNNNTTC	1 cut(s)	164
MseI	TTAA	1 cut(s)	69
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	1 cut(s)	294
MunI	CAATTG	1 cut(s)	393
MwoI	GCNNNNNNNGC	2 cut(s)	49, 958
NciI	CCSGG	1 cut(s)	294
NcoI	CCATGG	1 cut(s)	184
NdeII	GATC	3 cut(s)	331, 509, 744
NheI	GCTAGC	1 cut(s)	793
NlaIII	CATG	6 cut(s)	106, 147, 188, 541, 553, 646
NsbI	TGCGCA	1 cut(s)	906
PagI	TCATGA	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	787
PkrI	GCNGC	4 cut(s)	51, 274, 517, 904
Ppu21I	YACGTR	1 cut(s)	371
PstNI	CAGNNNCTG	1 cut(s)	1010
PsuI	RGATCY	1 cut(s)	331
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	4 cut(s)	50, 273, 516, 903
Sau3AI	GATC	3 cut(s)	331, 509, 744
ScrFI	CCNGG	1 cut(s)	294
SfaNI	GCATC	1 cut(s)	910
SfcI	CTRYAG	1 cut(s)	659
SmlI	CTYRAG	2 cut(s)	241, 327
SmoI	CTYRAG	2 cut(s)	241, 327
Sse9I	AATT	3 cut(s)	393, 431, 627
SsiI	CCGC	2 cut(s)	204, 439
SspMI	CTAG	3 cut(s)	221, 794, 936
StyD4I	CCNGG	1 cut(s)	292
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	3 cut(s)	305, 530, 913
TaiI	ACGT	2 cut(s)	373, 901
TaqI	TCGA	1 cut(s)	978
TasI	AATT	3 cut(s)	393, 431, 627
TatI	WGTACW	1 cut(s)	96
TfiI	GAWTC	1 cut(s)	787
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	2 cut(s)	268, 599
TseI	GCWGC	4 cut(s)	49, 272, 515, 902
TspDTI	ATGAA	4 cut(s)	91, 209, 887, 996
TspGWI	ACGGA	2 cut(s)	563, 719
TspRI	CASTG	2 cut(s)	268, 599
XapI	RAATTY	1 cut(s)	431
XmiI	GTMKAC	1 cut(s)	379
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	3 cut(s)	221, 794, 936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.