Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8450187.1

Orthogroup ID

OG0005347

Physical Location & Seq

Genomic Coordinates Reverse (-)

481 .. 1505

Gene Structure 1025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8450187.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atggaaaagggcatgagggcttttgtttcttacatccgtgcatataaagaacaccactgctcctacattttcaggtggaaagaacttgaaattgggaagttgggcatgggatttggactactacagctccctgcaatgcctgaggtaaagcacaacacactttccacggagggtttcacccctgttgcagacatcaacttggaggagatcaaatataaggacaaatctcgtgagaagcaaagaaggaagaatctgctagcaaagaaggaggcaaaaaagcaagaacctaaacctgaaaaaacaaaaaaaaaaccaagtgctaaagctaatgagatgaagaagaaaacagctaaacaaagacgtgctgcgcagacggttgaagatgcagatgagttgactagagaatatcgcctgctgaaaaagctgaaaaaggggactatcgatgaaactgagtttgccaagttgacaggaactgaggacttactatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003727 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008187 GO:0008266 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

162

Amino Acids

18.84

Weight (kDa)

9.74

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71280 AT1G71280 AT1G71370 AT5G05450
fragaria_vesca	FvH4_6g01590 FvH4_6g01590 FvH4_6g01590 FvH4_6g03480 FvH4_7g25130 FvH4_7g25130 FvH4_7g25130
malus_domestica	MD01G1158100.v1.1 MD07G1226800.v1.1
prunus_persica	Prupe.2G256400_v2.0.a1
pyrus_communis	pycom01g17480 pycom07g20540
rosa_chinensis	RchiOBHm_Chr1g0371021 RchiOBHm_Chr1g0371031
rosa_laevigata	RLG00000026991
rosa_multiflora	Rmu_co8450187.1_g000001 Rmu_sc0001018.1_g000027 Rmu_sc0003272.1_g000004
rosa_roxburghii	Rroxscaffold_4G00286030
rosa_rugosa	Rorug01G0360900
rosa_samantha	Rh1AG371200 Rh1BG334700 Rh1CG348000 Rh1DG365900
rosa_wichuraiana	Rw1G032650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	369
AgsI	TTSAA	2 cut(s)	89, 380
AjiI	CACGTC	1 cut(s)	362
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	4 cut(s)	127, 326, 350, 424
AluI	AGCT	4 cut(s)	127, 326, 350, 424
AlwNI	CAGNNNCTG	1 cut(s)	473
ApeKI	GCWGC	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	370
AsuHPI	GGTGA	1 cut(s)	169
AsuNHI	GCTAGC	1 cut(s)	256
AxyI	CCTNAGG	1 cut(s)	141
BauI	CACGAG	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	352
BfaI	CTAG	2 cut(s)	257, 399
BfmI	CTRYAG	1 cut(s)	122
BisI	GCNGC	1 cut(s)	366
BlsI	GCNGC	1 cut(s)	367
BmgBI	CACGTC	1 cut(s)	362
BmsI	GCATC	1 cut(s)	373
BmtI	GCTAGC	1 cut(s)	260
Bsa29I	ATCGAT	1 cut(s)	441
BsaJI	CCNNGG	1 cut(s)	165
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 111, 141
Bse21I	CCTNAGG	1 cut(s)	141
Bse3DI	GCAATG	1 cut(s)	141
BseCI	ATCGAT	1 cut(s)	441
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	33
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	3 cut(s)	132, 441, 465
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	352
BshVI	ATCGAT	1 cut(s)	441
BslFI	GGGAC	1 cut(s)	448
BsmFI	GGGAC	1 cut(s)	448
Bsp143I	GATC	1 cut(s)	207
BspCNI	CTCAG	3 cut(s)	133, 442, 466
BspDI	ATCGAT	1 cut(s)	441
BspOI	GCTAGC	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	1 cut(s)	207
BssSI	CACGAG	1 cut(s)	228
Bst2BI	CACGAG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	376
BstC8I	GCNNGC	2 cut(s)	258, 413
BstDEI	CTNAG	3 cut(s)	141, 450, 474
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	1 cut(s)	210
BstMBI	GATC	1 cut(s)	207
BstMWI	GCNNNNNNNGC	1 cut(s)	421
BstSFI	CTRYAG	1 cut(s)	122
BstV1I	GCAGC	1 cut(s)	352
Bsu15I	ATCGAT	1 cut(s)	441
Bsu36I	CCTNAGG	1 cut(s)	141
BsuTUI	ATCGAT	1 cut(s)	441
BtgI	CCRYGG	1 cut(s)	165
BtrI	CACGTC	1 cut(s)	362
BtsCI	GGATG	1 cut(s)	33
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	2 cut(s)	258, 413
CaiI	CAGNNNCTG	1 cut(s)	473
CfoI	GCGC	1 cut(s)	370
ClaI	ATCGAT	1 cut(s)	441
CviAII	CATG	2 cut(s)	13, 106
CviJI	RGCY	5 cut(s)	20, 127, 326, 350, 424
CviKI_1	RGCY	5 cut(s)	20, 127, 326, 350, 424
DdeI	CTNAG	3 cut(s)	141, 450, 474
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
Eco81I	CCTNAGG	1 cut(s)	141
FaeI	CATG	2 cut(s)	16, 109
FaiI	YATR	6 cut(s)	14, 43, 45, 107, 216, 487
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	2 cut(s)	12, 105
Fnu4HI	GCNGC	1 cut(s)	366
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	366
FspBI	CTAG	2 cut(s)	257, 399
FspI	TGCGCA	1 cut(s)	369
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	1 cut(s)	366
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	2 cut(s)	16, 109
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HincII	GTYRAC	2 cut(s)	396, 465
HindII	GTYRAC	2 cut(s)	396, 465
HinfI	GANTC	1 cut(s)	250
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	2 cut(s)	396, 465
Hpy188III	TCNNGA	1 cut(s)	230
Hpy8I	GTNNAC	2 cut(s)	396, 465
HpyAV	CCTTC	2 cut(s)	237, 259
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4IV	ACGT	1 cut(s)	361
HpyCH4V	TGCA	4 cut(s)	41, 134, 188, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	421
HpyF3I	CTNAG	3 cut(s)	141, 450, 474
HpySE526I	ACGT	1 cut(s)	361
Hsp92II	CATG	2 cut(s)	16, 109
HspAI	GCGC	1 cut(s)	368
Kzo9I	GATC	1 cut(s)	207
LmnI	GCTCC	2 cut(s)	65, 132
LpnPI	CCDG	7 cut(s)	58, 144, 153, 195, 306, 425, 453
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	1 cut(s)	373
MaeI	CTAG	2 cut(s)	257, 399
MaeII	ACGT	1 cut(s)	361
MalI	GATC	1 cut(s)	209
MboI	GATC	1 cut(s)	207
MboII	GAAGA	4 cut(s)	259, 349, 352, 392
MluCI	AATT	1 cut(s)	90
MnlI	CCTC	6 cut(s)	9, 136, 163, 196, 262, 469
MwoI	GCNNNNNNNGC	1 cut(s)	421
NdeII	GATC	1 cut(s)	207
NheI	GCTAGC	1 cut(s)	256
NlaIII	CATG	2 cut(s)	16, 109
NsbI	TGCGCA	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	1 cut(s)	367
PstNI	CAGNNNCTG	1 cut(s)	473
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	1 cut(s)	207
SetI	ASST	9 cut(s)	77, 129, 147, 289, 295, 328, 352, 364, 426
SfaNI	GCATC	1 cut(s)	373
SfcI	CTRYAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	90
SspMI	CTAG	2 cut(s)	257, 399
TaaI	ACNGT	1 cut(s)	376
TaiI	ACGT	1 cut(s)	364
TaqI	TCGA	1 cut(s)	441
TasI	AATT	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	250
TscAI	CASTG	1 cut(s)	62
TseI	GCWGC	1 cut(s)	365
TspDTI	ATGAA	2 cut(s)	350, 459
TspGWI	ACGGA	2 cut(s)	26, 182
TspRI	CASTG	1 cut(s)	62
XspI	CTAG	2 cut(s)	257, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.