Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001018.1

Orthogroup ID

OG0005347

Physical Location & Seq

Genomic Coordinates Reverse (-)

115952 .. 117595

Gene Structure 1644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001018.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

atggacaccgcctccccctacccctgcgccaacagcgcgttaagcaacacgcgcttctccgacctgaagcctccactctccgaacctgtcctccaagccctaaccgaaggcggcttcgacttctgcactccggttcaagccgccacaatccccttgctatgcagcttcaaggacgtcgccgtcgacgccgccaccggctccggcaaaaccctcgccttcgtcgtcccactcgtagagatcctccgccgcgcttccaccaaccccaaacctcaccaggttatggggatgattatatctccgacgagagagctgtcgtcgcaaatttacaacgtggcgaagcccttcatttcgacattgccgaatttcaagtgtgtgcttttggttgggggagggcaagtgaaagcagacgtgaagctaatacaggaggagggagcctgtactcttacctttgtatttactttcctcttgacacaatccaaatcgtttactgatgcccaaaactggggatccagtaccaatttgctgattggcacaccaggtagattgtatgacattatggaacgcatggatagcttggatttgcgcaactttgagattttgatcttagatgaggcggataggctgttggatatgggattccaaaagcagctgactgatattatatctcgcgtgccaaagcttcgaagaactggtcttttttcagctacacagactgaggcagttgaagagctggccagggcggggttgaggaatcctgtgagggttgaagtacgggcggaatcaaaatcaaataaggattcagcgttgtcacagcaatctgcgtcatccaaaacaccttctggccttgccattgagtatatggagtgtgaggcagacaagaagccgtcgcagcttgtggatatccttgttaagaataagtctcacaagaccatagtgtacttcatgacttgtgcttgtgttgactactggggagttgttcttccatgccttgctctgttgaaggatttcaatctgattgctctccatgggaagatgaaacaggtgaaaacatggaaatactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003727 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008187 GO:0008266 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

353

Amino Acids

38.85

Weight (kDa)

8.29

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71280 AT1G71280 AT1G71370 AT5G05450
fragaria_vesca	FvH4_6g01590 FvH4_6g01590 FvH4_6g01590 FvH4_6g03480 FvH4_7g25130 FvH4_7g25130 FvH4_7g25130
malus_domestica	MD01G1158100.v1.1 MD07G1226800.v1.1
prunus_persica	Prupe.2G256400_v2.0.a1
pyrus_communis	pycom01g17480 pycom07g20540
rosa_chinensis	RchiOBHm_Chr1g0371021 RchiOBHm_Chr1g0371031
rosa_laevigata	RLG00000026991
rosa_multiflora	Rmu_co8450187.1_g000001 Rmu_sc0001018.1_g000027 Rmu_sc0003272.1_g000004
rosa_roxburghii	Rroxscaffold_4G00286030
rosa_rugosa	Rorug01G0360900
rosa_samantha	Rh1AG371200 Rh1BG334700 Rh1CG348000 Rh1DG365900
rosa_wichuraiana	Rw1G032650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AatII	GACGTC	1 cut(s)	177
Acc16I	TGCGCA	1 cut(s)	584
AccB7I	CCANNNNNTGG	1 cut(s)	280
AccI	GTMKAC	1 cut(s)	183
AccII	CGCG	4 cut(s)	38, 52, 249, 669
AciI	CCGC	9 cut(s)	9, 111, 141, 189, 244, 247, 614, 740, 776
AclWI	GGATC	3 cut(s)	232, 501, 514
AcoI	YGGCCR	1 cut(s)	732
AcsI	RAATTY	2 cut(s)	321, 361
AcuI	CTGAAG	1 cut(s)	86
AcyI	GRCGYC	2 cut(s)	174, 186
AfaI	GTAC	4 cut(s)	439, 514, 771, 938
AfiI	CCNNNNNNNGG	4 cut(s)	280, 501, 502, 741
AgsI	TTSAA	7 cut(s)	137, 169, 367, 725, 767, 1000, 1009
AjiI	CACGTC	1 cut(s)	409
AjnI	CCWGG	3 cut(s)	273, 535, 734
AloI	GAACNNNNNNTCC	2 cut(s)	75, 107
AluBI	AGCT	9 cut(s)	165, 310, 415, 573, 649, 679, 704, 730, 892
AluI	AGCT	9 cut(s)	165, 310, 415, 573, 649, 679, 704, 730, 892
Alw26I	GTCTC	1 cut(s)	924
AlwI	GGATC	3 cut(s)	232, 501, 514
AoxI	GGCC	2 cut(s)	732, 841
ApeKI	GCWGC	3 cut(s)	162, 646, 889
ApoI	RAATTY	2 cut(s)	321, 361
ArsI	GACNNNNNNTTYG	2 cut(s)	676, 708
Asp700I	GAANNNNTTC	2 cut(s)	341, 1004
AspLEI	GCGC	5 cut(s)	29, 38, 54, 251, 585
AsuHPI	GGTGA	2 cut(s)	263, 1054
AsuII	TTCGAA	1 cut(s)	682
BalI	TGGCCA	1 cut(s)	734
BamHI	GGATCC	1 cut(s)	506
BbvI	GCAGC	3 cut(s)	174, 658, 901
BceAI	ACGGC	2 cut(s)	164, 868
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BciT130I	CCWGG	3 cut(s)	275, 537, 736
BcoDI	GTCTC	1 cut(s)	924
BfaI	CTAG	1 cut(s)	1060
BisI	GCNGC	7 cut(s)	112, 141, 163, 189, 247, 647, 890
BlsI	GCNGC	7 cut(s)	113, 142, 164, 190, 248, 648, 891
Bme1390I	CCNGG	3 cut(s)	275, 537, 736
BmgBI	CACGTC	1 cut(s)	409
BmiI	GGNNCC	3 cut(s)	199, 433, 508
BmrFI	CCNGG	3 cut(s)	275, 537, 736
BmrI	ACTGGG	2 cut(s)	511, 976
BmsI	GCATC	1 cut(s)	481
BmuI	ACTGGG	2 cut(s)	511, 976
Bpu14I	TTCGAA	1 cut(s)	682
BsaBI	GATNNNNATC	2 cut(s)	599, 1008
BsaHI	GRCGYC	2 cut(s)	174, 186
BsaJI	CCNNGG	2 cut(s)	735, 1024
BsaWI	WCCGGW	1 cut(s)	130
BsaXI	ACNNNNNCTCC	5 cut(s)	26, 75, 105, 381, 411
Bsc4I	CCNNNNNNNGG	4 cut(s)	280, 501, 502, 741
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	4 cut(s)	506, 510, 694, 971
Bse3DI	GCAATG	1 cut(s)	353
Bse8I	GATNNNNATC	2 cut(s)	599, 1008
BseBI	CCWGG	3 cut(s)	275, 537, 736
BseDI	CCNNGG	2 cut(s)	735, 1024
BseGI	GGATG	2 cut(s)	291, 824
BseJI	GATNNNNATC	2 cut(s)	599, 1008
BseLI	CCNNNNNNNGG	4 cut(s)	280, 501, 502, 741
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	1 cut(s)	705
BseNI	ACTGG	4 cut(s)	506, 510, 694, 971
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	3 cut(s)	174, 658, 901
BsgI	GTGCAG	1 cut(s)	109
Bsh1236I	CGCG	4 cut(s)	38, 52, 249, 669
BshFI	GGCC	2 cut(s)	734, 843
BsiSI	CCGG	3 cut(s)	131, 195, 201
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	4 cut(s)	280, 501, 502, 741
BsmAI	GTCTC	1 cut(s)	924
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	734, 843
Bsp119I	TTCGAA	1 cut(s)	682
Bsp143I	GATC	3 cut(s)	237, 506, 600
Bsp19I	CCATGG	1 cut(s)	1024
BspACI	CCGC	9 cut(s)	9, 111, 141, 189, 244, 247, 614, 740, 776
BspANI	GGCC	2 cut(s)	734, 843
BspCNI	CTCAG	1 cut(s)	706
BspFNI	CGCG	4 cut(s)	38, 52, 249, 669
BspHI	TCATGA	1 cut(s)	942
BspLI	GGNNCC	3 cut(s)	199, 433, 508
BspPI	GGATC	3 cut(s)	232, 501, 514
BspQI	GCTCTTC	1 cut(s)	720
BspT104I	TTCGAA	1 cut(s)	682
BsrDI	GCAATG	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	4 cut(s)	506, 510, 694, 971
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	2 cut(s)	735, 1024
BssMI	GATC	3 cut(s)	237, 506, 600
BssNI	GRCGYC	2 cut(s)	174, 186
BssT1I	CCWWGG	1 cut(s)	1024
Bst2UI	CCWGG	3 cut(s)	275, 537, 736
Bst6I	CTCTTC	1 cut(s)	720
BstACI	GRCGYC	2 cut(s)	174, 186
BstBI	TTCGAA	1 cut(s)	682
BstC8I	GCNNGC	2 cut(s)	671, 732
BstDEI	CTNAG	2 cut(s)	604, 714
BstDSI	CCRYGG	1 cut(s)	1024
BstF5I	GGATG	2 cut(s)	291, 824
BstFNI	CGCG	4 cut(s)	38, 52, 249, 669
BstHHI	GCGC	5 cut(s)	29, 38, 54, 251, 585
BstKTI	GATC	3 cut(s)	240, 509, 603
BstMAI	GTCTC	1 cut(s)	924
BstMBI	GATC	3 cut(s)	237, 506, 600
BstMWI	GCNNNNNNNGC	8 cut(s)	33, 35, 42, 51, 185, 316, 570, 889
BstNI	CCWGG	3 cut(s)	275, 537, 736
BstSCI	CCNGG	3 cut(s)	273, 535, 734
BstUI	CGCG	4 cut(s)	38, 52, 249, 669
BstV1I	GCAGC	3 cut(s)	174, 658, 901
BstX2I	RGATCY	2 cut(s)	237, 506
BstYI	RGATCY	2 cut(s)	237, 506
BsuRI	GGCC	2 cut(s)	734, 843
BtgI	CCRYGG	1 cut(s)	1024
BtrI	CACGTC	1 cut(s)	409
BtsCI	GGATG	2 cut(s)	291, 824
Cac8I	GCNNGC	2 cut(s)	671, 732
CciI	TCATGA	1 cut(s)	942
CfoI	GCGC	5 cut(s)	29, 38, 54, 251, 585
Cfr10I	RCCGGY	1 cut(s)	194
CseI	GACGC	2 cut(s)	194, 810
CsiI	ACCWGGT	2 cut(s)	273, 535
Csp6I	GTAC	4 cut(s)	438, 513, 770, 937
CviAII	CATG	5 cut(s)	565, 943, 984, 1025, 1050
CviQI	GTAC	4 cut(s)	438, 513, 770, 937
DdeI	CTNAG	2 cut(s)	604, 714
DpnI	GATC	3 cut(s)	239, 508, 602
DpnII	GATC	3 cut(s)	237, 506, 600
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
EaeI	YGGCCR	1 cut(s)	732
Eam1104I	CTCTTC	1 cut(s)	720
EarI	CTCTTC	1 cut(s)	720
EciI	GGCGGA	3 cut(s)	233, 629, 791
Eco130I	CCWWGG	1 cut(s)	1024
Eco32I	GATATC	1 cut(s)	901
Eco57I	CTGAAG	1 cut(s)	86
EcoRII	CCWGG	3 cut(s)	273, 535, 734
EcoRV	GATATC	1 cut(s)	901
EcoT14I	CCWWGG	1 cut(s)	1024
ErhI	CCWWGG	1 cut(s)	1024
FaeI	CATG	5 cut(s)	568, 946, 987, 1028, 1053
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	5 cut(s)	564, 942, 983, 1024, 1049
FauI	CCCGC	1 cut(s)	733
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	7 cut(s)	112, 141, 163, 189, 247, 647, 890
FokI	GGATG	2 cut(s)	298, 811
Fsp4HI	GCNGC	7 cut(s)	112, 141, 163, 189, 247, 647, 890
FspBI	CTAG	1 cut(s)	1060
FspI	TGCGCA	1 cut(s)	584
GlaI	GCGC	5 cut(s)	28, 37, 53, 250, 584
GluI	GCNGC	7 cut(s)	112, 141, 163, 189, 247, 647, 890
HaeIII	GGCC	2 cut(s)	734, 843
HapII	CCGG	3 cut(s)	131, 195, 201
HgaI	GACGC	2 cut(s)	194, 810
HhaI	GCGC	5 cut(s)	29, 38, 54, 251, 585
Hin1I	GRCGYC	2 cut(s)	174, 186
Hin1II	CATG	5 cut(s)	568, 946, 987, 1028, 1053
Hin6I	GCGC	5 cut(s)	27, 36, 52, 249, 583
HinP1I	GCGC	5 cut(s)	27, 36, 52, 249, 583
HincII	GTYRAC	2 cut(s)	184, 961
HindII	GTYRAC	2 cut(s)	184, 961
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	4 cut(s)	636, 751, 779, 797
HpaII	CCGG	3 cut(s)	131, 195, 201
HphI	GGTGA	2 cut(s)	263, 1054
Hpy166II	GTNNAC	4 cut(s)	184, 486, 937, 961
Hpy188I	TCNGA	4 cut(s)	61, 82, 300, 1014
Hpy188III	TCNNGA	2 cut(s)	466, 943
Hpy8I	GTNNAC	4 cut(s)	184, 486, 937, 961
Hpy99I	CGWCG	7 cut(s)	179, 185, 188, 224, 304, 319, 889
HpyAV	CCTTC	5 cut(s)	101, 226, 352, 846, 994
HpyCH4IV	ACGT	3 cut(s)	174, 330, 408
HpyCH4V	TGCA	2 cut(s)	126, 162
HpyF10VI	GCNNNNNNNGC	8 cut(s)	33, 35, 42, 51, 185, 316, 570, 889
HpyF3I	CTNAG	2 cut(s)	604, 714
HpySE526I	ACGT	3 cut(s)	174, 330, 408
Hsp92I	GRCGYC	2 cut(s)	174, 186
Hsp92II	CATG	5 cut(s)	568, 946, 987, 1028, 1053
HspAI	GCGC	5 cut(s)	27, 36, 52, 249, 583
Kzo9I	GATC	3 cut(s)	237, 506, 600
LguI	GCTCTTC	1 cut(s)	720
LmnI	GCTCC	2 cut(s)	203, 431
Lsp1109I	GCAGC	3 cut(s)	174, 658, 901
LweI	GCATC	1 cut(s)	481
MabI	ACCWGGT	2 cut(s)	273, 535
MaeI	CTAG	1 cut(s)	1060
MaeII	ACGT	3 cut(s)	174, 330, 408
MaeIII	GTNAC	1 cut(s)	807
MalI	GATC	3 cut(s)	239, 508, 602
MboI	GATC	3 cut(s)	237, 506, 600
MboII	GAAGA	4 cut(s)	696, 737, 971, 1042
MflI	RGATCY	2 cut(s)	237, 506
MlsI	TGGCCA	1 cut(s)	734
MluCI	AATT	3 cut(s)	321, 361, 517
MluNI	TGGCCA	1 cut(s)	734
MmeI	TCCRAC	3 cut(s)	84, 323, 606
Mox20I	TGGCCA	1 cut(s)	734
MroXI	GAANNNNTTC	2 cut(s)	341, 1004
MscI	TGGCCA	1 cut(s)	734
MseI	TTAA	2 cut(s)	41, 909
Msp20I	TGGCCA	1 cut(s)	734
MspA1I	CMGCKG	1 cut(s)	649
MspI	CCGG	3 cut(s)	131, 195, 201
MspR9I	CCNGG	3 cut(s)	275, 537, 736
MvaI	CCWGG	3 cut(s)	275, 537, 736
MvnI	CGCG	4 cut(s)	38, 52, 249, 669
MwoI	GCNNNNNNNGC	8 cut(s)	33, 35, 42, 51, 185, 316, 570, 889
NcoI	CCATGG	1 cut(s)	1024
NdeII	GATC	3 cut(s)	237, 506, 600
NlaIII	CATG	5 cut(s)	568, 946, 987, 1028, 1053
NlaIV	GGNNCC	3 cut(s)	199, 433, 508
NmuCI	GTSAC	1 cut(s)	807
NsbI	TGCGCA	1 cut(s)	584
NspV	TTCGAA	1 cut(s)	682
PagI	TCATGA	1 cut(s)	942
PciSI	GCTCTTC	1 cut(s)	720
PcsI	WCGNNNNNNNCGW	4 cut(s)	180, 219, 228, 356
PdmI	GAANNNNTTC	2 cut(s)	341, 1004
PfeI	GAWTC	4 cut(s)	636, 751, 779, 797
PflMI	CCANNNNNTGG	1 cut(s)	280
PkrI	GCNGC	7 cut(s)	113, 142, 164, 190, 248, 648, 891
Psp6I	CCWGG	3 cut(s)	273, 535, 734
PspGI	CCWGG	3 cut(s)	273, 535, 734
PspN4I	GGNNCC	3 cut(s)	199, 433, 508
PsuI	RGATCY	2 cut(s)	237, 506
PvuII	CAGCTG	1 cut(s)	649
RsaI	GTAC	4 cut(s)	439, 514, 771, 938
RsaNI	GTAC	4 cut(s)	438, 513, 770, 937
SalI	GTCGAC	1 cut(s)	182
SapI	GCTCTTC	1 cut(s)	720
SaqAI	TTAA	2 cut(s)	41, 909
SatI	GCNGC	7 cut(s)	112, 141, 163, 189, 247, 647, 890
Sau3AI	GATC	3 cut(s)	237, 506, 600
ScrFI	CCNGG	3 cut(s)	275, 537, 736
SexAI	ACCWGGT	2 cut(s)	273, 535
SfaNI	GCATC	1 cut(s)	481
SfuI	TTCGAA	1 cut(s)	682
SgrDI	CGTCGACG	1 cut(s)	182
Sse9I	AATT	3 cut(s)	321, 361, 517
SsiI	CCGC	9 cut(s)	9, 111, 141, 189, 244, 247, 614, 740, 776
SspMI	CTAG	1 cut(s)	1060
StyD4I	CCNGG	3 cut(s)	273, 535, 734
StyI	CCWWGG	1 cut(s)	1024
TaiI	ACGT	3 cut(s)	177, 333, 411
TaqI	TCGA	4 cut(s)	117, 183, 350, 682
TasI	AATT	3 cut(s)	321, 361, 517
TatI	WGTACW	2 cut(s)	437, 936
TauI	GCSGC	4 cut(s)	114, 143, 191, 249
TfiI	GAWTC	4 cut(s)	636, 751, 779, 797
Tru1I	TTAA	2 cut(s)	41, 909
Tru9I	TTAA	2 cut(s)	41, 909
TseFI	GTSAC	1 cut(s)	807
TseI	GCWGC	3 cut(s)	162, 646, 889
Tsp45I	GTSAC	1 cut(s)	807
TspDTI	ATGAA	3 cut(s)	334, 931, 1049
Van91I	CCANNNNNTGG	1 cut(s)	280
XapI	RAATTY	2 cut(s)	321, 361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	856
XmiI	GTMKAC	1 cut(s)	183
XmnI	GAANNNNTTC	2 cut(s)	341, 1004
XspI	CTAG	1 cut(s)	1060
ZraI	GACGTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.