Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003272.1

Orthogroup ID

OG0005347

Physical Location & Seq

Genomic Coordinates Forward (+)

16368 .. 21254

Gene Structure 4887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003272.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgaaacttgttcttgctaaggtagagcgtgaagttggtgataccattctgtcagttaaggaggattcgtcatcgcctaatcttgctactgcactcgctgtagttatgcgcatccagttttgctactgtcctcatacatcctttaaattactaccctccgccagattcgagctagctactactgcttctattttccaagccctaaccgaaggcggcttcaaattttgcccttcgattcaagccgccacaatcctcttgctatgcagcttcaaggacgtctccgtcgacgccgccacctgctccggcaaaaccctcggcttcgtggtcctactcgtcgagatactccgctatgcttccaccaacctcaaacctcaccaggtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DUF4217 Helicase_C

Protein Analysis

127

Amino Acids

13.74

Weight (kDa)

8.31

Isoelectric Point (pI)

24.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71280 AT1G71280 AT1G71370 AT5G05450
fragaria_vesca	FvH4_6g01590 FvH4_6g01590 FvH4_6g01590 FvH4_6g03480 FvH4_7g25130 FvH4_7g25130 FvH4_7g25130
malus_domestica	MD01G1158100.v1.1 MD07G1226800.v1.1
prunus_persica	Prupe.2G256400_v2.0.a1
pyrus_communis	pycom01g17480 pycom07g20540
rosa_chinensis	RchiOBHm_Chr1g0371021 RchiOBHm_Chr1g0371031
rosa_laevigata	RLG00000026991
rosa_multiflora	Rmu_co8450187.1_g000001 Rmu_sc0001018.1_g000027 Rmu_sc0003272.1_g000004
rosa_roxburghii	Rroxscaffold_4G00286030
rosa_rugosa	Rorug01G0360900
rosa_samantha	Rh1AG371200 Rh1BG334700 Rh1CG348000 Rh1DG365900
rosa_wichuraiana	Rw1G032650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	305
AasI	GACNNNNNNGTC	1 cut(s)	281
AatII	GACGTC	1 cut(s)	279
Acc16I	TGCGCA	1 cut(s)	110
Acc36I	ACCTGC	1 cut(s)	305
AccI	GTMKAC	1 cut(s)	285
AciI	CCGC	5 cut(s)	159, 213, 243, 291, 346
AcsI	RAATTY	1 cut(s)	221
AcyI	GRCGYC	2 cut(s)	276, 288
AgsI	TTSAA	3 cut(s)	220, 239, 271
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	3 cut(s)	172, 176, 267
AluI	AGCT	3 cut(s)	172, 176, 267
Alw26I	GTCTC	1 cut(s)	283
ApeKI	GCWGC	1 cut(s)	264
ApoI	RAATTY	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	325
AsuHPI	GGTGA	2 cut(s)	50, 365
AsuNHI	GCTAGC	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	325
BbvI	GCAGC	1 cut(s)	276
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BciT130I	CCWGG	1 cut(s)	377
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	305
BisI	GCNGC	4 cut(s)	214, 243, 265, 291
BlsI	GCNGC	4 cut(s)	215, 244, 266, 292
Bme1390I	CCNGG	1 cut(s)	377
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	325
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	1 cut(s)	120
BmtI	GCTAGC	1 cut(s)	176
Bpu10I	CCTNAGC	1 cut(s)	18
BsaHI	GRCGYC	2 cut(s)	276, 288
BsaJI	CCNNGG	1 cut(s)	313
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bse1I	ACTGG	1 cut(s)	115
BseBI	CCWGG	1 cut(s)	377
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	2 cut(s)	111, 137
BseNI	ACTGG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	276
BsgI	GTGCAG	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	303
BsmAI	GTCTC	1 cut(s)	283
BsmBI	CGTCTC	1 cut(s)	283
BspACI	CCGC	5 cut(s)	159, 213, 243, 291, 346
BspMI	ACCTGC	1 cut(s)	305
BspOI	GCTAGC	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	313
BssNI	GRCGYC	2 cut(s)	276, 288
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	1 cut(s)	128
BstACI	GRCGYC	2 cut(s)	276, 288
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	18
BstF5I	GGATG	2 cut(s)	111, 137
BstHHI	GCGC	1 cut(s)	111
BstMAI	GTCTC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNI	CCWGG	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	375
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	276
BtgZI	GCGATG	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	111, 137
BveI	ACCTGC	1 cut(s)	305
Cac8I	GCNNGC	1 cut(s)	174
CfoI	GCGC	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	325
CseI	GACGC	1 cut(s)	296
CsiI	ACCWGGT	1 cut(s)	375
CviJI	RGCY	7 cut(s)	172, 176, 200, 216, 242, 267, 318
CviKI_1	RGCY	7 cut(s)	172, 176, 200, 216, 242, 267, 318
DdeI	CTNAG	1 cut(s)	18
DraI	TTTAAA	1 cut(s)	145
DrdI	GACNNNNNNGTC	1 cut(s)	281
DseDI	GACNNNNNNGTC	1 cut(s)	281
EciI	GGCGGA	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	375
Esp3I	CGTCTC	1 cut(s)	283
FaiI	YATR	4 cut(s)	107, 135, 262, 351
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	4 cut(s)	214, 243, 265, 291
FokI	GGATG	2 cut(s)	98, 124
Fsp4HI	GCNGC	4 cut(s)	214, 243, 265, 291
FspAI	RTGCGCAY	1 cut(s)	110
FspBI	CTAG	1 cut(s)	173
FspI	TGCGCA	1 cut(s)	110
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	4 cut(s)	214, 243, 265, 291
HapII	CCGG	1 cut(s)	303
HgaI	GACGC	1 cut(s)	296
HhaI	GCGC	1 cut(s)	111
Hin1I	GRCGYC	2 cut(s)	276, 288
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	3 cut(s)	65, 165, 235
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	2 cut(s)	50, 365
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	1 cut(s)	383
Hpy188III	TCNNGA	1 cut(s)	337
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	3 cut(s)	287, 290, 338
HpyAV	CCTTC	2 cut(s)	203, 240
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	2 cut(s)	92, 264
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	2 cut(s)	276, 288
HspAI	GCGC	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	305
LpnPI	CCDG	5 cut(s)	128, 175, 310, 316, 362
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	1 cut(s)	120
MabI	ACCWGGT	1 cut(s)	375
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	1 cut(s)	276
MluCI	AATT	2 cut(s)	146, 221
MnlI	CCTC	7 cut(s)	55, 141, 166, 263, 323, 374, 381
MseI	TTAA	2 cut(s)	57, 144
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	1 cut(s)	182
NheI	GCTAGC	1 cut(s)	172
NmeAIII	GCCGAG	1 cut(s)	294
NsbI	TGCGCA	1 cut(s)	110
PaqCI	CACCTGC	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PfeI	GAWTC	3 cut(s)	65, 165, 235
PkrI	GCNGC	4 cut(s)	215, 244, 266, 292
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspPI	GGNCC	1 cut(s)	325
SalI	GTCGAC	1 cut(s)	284
SaqAI	TTAA	2 cut(s)	57, 144
SatI	GCNGC	4 cut(s)	214, 243, 265, 291
Sau96I	GGNCC	1 cut(s)	325
ScrFI	CCNGG	1 cut(s)	377
SetI	ASST	9 cut(s)	24, 174, 178, 269, 279, 299, 366, 373, 381
SexAI	ACCWGGT	1 cut(s)	375
SfaNI	GCATC	1 cut(s)	120
SfcI	CTRYAG	1 cut(s)	99
SgrDI	CGTCGACG	1 cut(s)	284
SinI	GGWCC	1 cut(s)	325
Sse9I	AATT	2 cut(s)	146, 221
SsiI	CCGC	5 cut(s)	159, 213, 243, 291, 346
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	375
TaaI	ACNGT	1 cut(s)	128
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	4 cut(s)	168, 233, 285, 336
TasI	AATT	2 cut(s)	146, 221
TauI	GCSGC	3 cut(s)	216, 245, 293
TfiI	GAWTC	3 cut(s)	65, 165, 235
Tru1I	TTAA	2 cut(s)	57, 144
Tru9I	TTAA	2 cut(s)	57, 144
TseI	GCWGC	1 cut(s)	264
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	271
VpaK11BI	GGWCC	1 cut(s)	325
XapI	RAATTY	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	1 cut(s)	173
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.