Rroxscaffold_4G00286030

DEAD-box ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
7194955 .. 7205327
10373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00286030.1

Sequence Viewer

Length: 1506 bp
ATGGGGATGATTATATCTCCGACGAGAGAGCTGTCGTCGCAAATTTACAACGTGGCGAAGCCCTTCATTTCGACATTGCCGAATTTCAAGTGTGTGCTTTTGGTTGGGGGAGGGCAAGTGAAAGCAGACGTGAAGCTAATACAGGAGGAGGGAGCCAATTTGCTGATTGGCACACCAGGTAGATTGTATGACATTATGGAACGCATGGATAGCTTGGATTTGCGCAACTTTGAGATTTTGATCTTAGATGAGGCGGATAGGCTGTTGGATATGGGATTCCAAAAGCAGCTGACTGATATTATATCTCGCGTGCCAAAGCTTCGAAGAACTGGTCTTTTTTCAGCTACACAGACTGAGGCAGTTGAAGAGCTGGCCAGGGCGGGGTTGAGGAATCCTGTGAGGGTTGAAGTACGGGCGGAATCAAAGTCAAATAAGGATTCAGCGTTGTCACAGCAATCTGCGTCGTCCAAAACACCTTCTGGCCTTGCCATTGAGTATATGGAGTGTGAGGCAGACAAGAAGCCGTCGCAGCTTGTGGATGTCCTTGTTAAGAATAAGTCTCACAAGACCATAGTGTACTTCATGACTTGTGCTTGTGTTGACTACTGGGGAGTTGTTCTTCCATGCCTTGCTCCGTTGAAGGATTTCAATCTGATTGCTCTCCATGGGAAGATGAAACAGACCGCAAGGGACAAAGCTCTAGCCTCATTTACATCTCTCTCAAGTGGCATCCTTCTATGCACTGATGTTGCAGCCCGTGGACTTGACATTCCGGGTGTTGACTGTATAGTGCAGTATGATACACCTCAAGATCCAAATGTTTTCGTGCATAGAGTTGGCAGAACAGCACGTATGGGTAGACAAGGAAGTGCAATTGTTTTCCTGTTACCAAAGGAGGAAGCTTATGTGGAATTCCTGCGGATAAGAAGAGTTCCTCTTCAAGAAAGGATATGTCTGGATGATGTCGCTGATGTTGTTCCTCAGATACGATCTGCTGCAAAAAAAGACCGTGATATCATGGAAAAGGGCATGAGGGCTTTTGTTTCTTACATCCGTGCATATAAAGAACACCACTGCTCCTACATTTTCAGGTGGAAAGAACTTGAAATTGGGAAGTTGGGCATGGGATTTGGACTACTACAGCTCCCTGCAATGCCTGAGGTAAAGCACAACACACTTTCCACGGAGGGTTTCACCCCTGTTGCAGACATCAACTTGGAGGAGATCAAATATAAGGACAAATCTCGTGAGAAGCAAAGAAGGAAGAATCTGCTAGCAAAGAAAGAGGCAAAAAAGCAAGAACCTAAACCTGAAAAAACCAAAAAAAACCCTAGTGCTAAAGCTAATGAGATGAAGAAGAAAACAGCTAAACAAAGACGTGCTGCCCAGACGGTTGAAGATGCAGATGAGTTGACTAGAGAATATCGCCTGCTGAAAAAGCTGAAAAGGGGGACTATCAATGAAACTGAGTTTGCCAAGTTGACAGGAACTGAGGACTTACTATGA

Protein Analysis

501

Amino Acids

56.44

Weight (kDa)

9.3

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 3 - 123 7.2e-26 DEAD/DEAH box helicase
Helicase_C PF00271 174 - 286 5.2e-25 Helicase conserved C-terminal domain
CTE_SPB4 PF13959 336 - 385 8.1e-19 ATP-dependent rRNA helicase SPB4-like, C-terminal extension
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 224
AccI GTMKAC 1 cut(s) 859
AccII CGCG 1 cut(s) 309
AciI CCGC 5 cut(s) 254, 380, 416, 684, 919
AclWI GGATC 1 cut(s) 806
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 3 cut(s) 42, 82, 911
AfaI GTAC 2 cut(s) 411, 578
AfiI CCNNNNNNNGG 1 cut(s) 381
AgsI TTSAA 8 cut(s) 88, 365, 407, 640, 649, 941, 1106, 1397
AjiI CACGTC 2 cut(s) 130, 1379
AjnI CCWGG 2 cut(s) 175, 374
AjuI GAANNNNNNNTTGG 2 cut(s) 1092, 1124
Alw26I GTCTC 1 cut(s) 564
AlwI GGATC 1 cut(s) 806
AlwNI CAGNNNCTG 1 cut(s) 1490
AoxI GGCC 2 cut(s) 372, 481
ApeKI GCWGC 5 cut(s) 286, 529, 752, 995, 1382
ApoI RAATTY 3 cut(s) 42, 82, 911
ArsI GACNNNNNNTTYG 2 cut(s) 316, 348
Asp700I GAANNNNTTC 2 cut(s) 62, 644
AspLEI GCGC 1 cut(s) 225
AsuC2I CCSGG 1 cut(s) 774
AsuHPI GGTGA 1 cut(s) 1186
AsuII TTCGAA 1 cut(s) 322
AsuNHI GCTAGC 1 cut(s) 1273
AxyI CCTNAGG 1 cut(s) 1158
BalI TGGCCA 1 cut(s) 374
BauI CACGAG 1 cut(s) 1245
BbvI GCAGC 5 cut(s) 298, 541, 764, 982, 1369
BceAI ACGGC 1 cut(s) 508
BciT130I CCWGG 2 cut(s) 177, 376
BcnI CCSGG 1 cut(s) 774
BcoDI GTCTC 1 cut(s) 564
BfaI CTAG 4 cut(s) 701, 1274, 1332, 1416
BfmI CTRYAG 1 cut(s) 1139
BisI GCNGC 5 cut(s) 287, 530, 753, 996, 1383
BlsI GCNGC 5 cut(s) 288, 531, 754, 997, 1384
Bme1390I CCNGG 3 cut(s) 177, 376, 774
BmgBI CACGTC 2 cut(s) 130, 1379
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 3 cut(s) 177, 376, 774
BmrI ACTGGG 1 cut(s) 616
BmsI GCATC 2 cut(s) 738, 1390
BmtI GCTAGC 1 cut(s) 1277
BmuI ACTGGG 1 cut(s) 616
Bpu14I TTCGAA 1 cut(s) 322
BpuEI CTTGAG 2 cut(s) 706, 792
BpuMI CCSGG 1 cut(s) 774
BsaAI YACGTR 1 cut(s) 851
BsaBI GATNNNNATC 2 cut(s) 239, 648
BsaJI CCNNGG 4 cut(s) 375, 664, 757, 1182
BsaXI ACNNNNNCTCC 6 cut(s) 102, 132, 1061, 1091, 1128, 1158
Bsc4I CCNNNNNNNGG 1 cut(s) 381
Bse1I ACTGG 2 cut(s) 334, 611
Bse21I CCTNAGG 1 cut(s) 1158
Bse3DI GCAATG 2 cut(s) 74, 1158
Bse8I GATNNNNATC 2 cut(s) 239, 648
BseBI CCWGG 2 cut(s) 177, 376
BseDI CCNNGG 4 cut(s) 375, 664, 757, 1182
BseGI GGATG 5 cut(s) 12, 544, 729, 964, 1050
BseJI GATNNNNATC 2 cut(s) 239, 648
BseLI CCNNNNNNNGG 1 cut(s) 381
BseMI GCAATG 2 cut(s) 74, 1158
BseMII CTCAG 5 cut(s) 345, 995, 1149, 1458, 1482
BseNI ACTGG 2 cut(s) 334, 611
BseRI GAGGAG 2 cut(s) 161, 1235
BseXI GCAGC 5 cut(s) 298, 541, 764, 982, 1369
BsgI GTGCAG 1 cut(s) 812
Bsh1236I CGCG 1 cut(s) 309
BshFI GGCC 2 cut(s) 374, 483
BsiSI CCGG 1 cut(s) 773
BslFI GGGAC 2 cut(s) 704, 1465
BslI CCNNNNNNNGG 1 cut(s) 381
BsmAI GTCTC 1 cut(s) 564
BsmFI GGGAC 2 cut(s) 704, 1465
BsnI GGCC 2 cut(s) 374, 483
Bsp119I TTCGAA 1 cut(s) 322
Bsp143I GATC 4 cut(s) 240, 811, 989, 1224
Bsp19I CCATGG 1 cut(s) 664
BspACI CCGC 5 cut(s) 254, 380, 416, 684, 919
BspANI GGCC 2 cut(s) 374, 483
BspCNI CTCAG 5 cut(s) 346, 994, 1150, 1459, 1483
BspFNI CGCG 1 cut(s) 309
BspHI TCATGA 1 cut(s) 582
BspLI GGNNCC 1 cut(s) 154
BspOI GCTAGC 1 cut(s) 1277
BspPI GGATC 1 cut(s) 806
BspQI GCTCTTC 1 cut(s) 360
BspT104I TTCGAA 1 cut(s) 322
BsrDI GCAATG 2 cut(s) 74, 1158
BsrI ACTGG 2 cut(s) 334, 611
BssECI CCNNGG 4 cut(s) 375, 664, 757, 1182
BssMI GATC 4 cut(s) 240, 811, 989, 1224
BssSI CACGAG 1 cut(s) 1245
BssT1I CCWWGG 1 cut(s) 664
Bst2BI CACGAG 1 cut(s) 1245
Bst2UI CCWGG 2 cut(s) 177, 376
Bst4CI ACNGT 3 cut(s) 785, 1010, 1393
Bst6I CTCTTC 3 cut(s) 360, 922, 942
BstBAI YACGTR 1 cut(s) 851
BstBI TTCGAA 1 cut(s) 322
BstC8I GCNNGC 4 cut(s) 311, 372, 1275, 1430
BstDEI CTNAG 6 cut(s) 244, 354, 981, 1158, 1467, 1491
BstDSI CCRYGG 3 cut(s) 664, 757, 1182
BstF5I GGATG 5 cut(s) 12, 544, 729, 964, 1050
BstFNI CGCG 1 cut(s) 309
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 4 cut(s) 243, 814, 992, 1227
BstMAI GTCTC 1 cut(s) 564
BstMBI GATC 4 cut(s) 240, 811, 989, 1224
BstMWI GCNNNNNNNGC 4 cut(s) 37, 210, 529, 1438
BstNI CCWGG 2 cut(s) 177, 376
BstSCI CCNGG 3 cut(s) 175, 374, 772
BstSFI CTRYAG 1 cut(s) 1139
BstUI CGCG 1 cut(s) 309
BstV1I GCAGC 5 cut(s) 298, 541, 764, 982, 1369
BstX2I RGATCY 1 cut(s) 811
BstYI RGATCY 1 cut(s) 811
Bsu36I CCTNAGG 1 cut(s) 1158
BsuRI GGCC 2 cut(s) 374, 483
BtgI CCRYGG 3 cut(s) 664, 757, 1182
BtrI CACGTC 2 cut(s) 130, 1379
BtsCI GGATG 5 cut(s) 12, 544, 729, 964, 1050
BtsI GCAGTG 1 cut(s) 1072
BtsIMutI CAGTG 2 cut(s) 741, 1072
Cac8I GCNNGC 4 cut(s) 311, 372, 1275, 1430
CaiI CAGNNNCTG 1 cut(s) 1490
CciI TCATGA 1 cut(s) 582
CfoI GCGC 1 cut(s) 225
CseI GACGC 1 cut(s) 450
CsiI ACCWGGT 1 cut(s) 175
Csp6I GTAC 2 cut(s) 410, 577
CviAII CATG 7 cut(s) 205, 583, 624, 665, 1018, 1030, 1123
CviQI GTAC 2 cut(s) 410, 577
DdeI CTNAG 6 cut(s) 244, 354, 981, 1158, 1467, 1491
DpnI GATC 4 cut(s) 242, 813, 991, 1226
DpnII GATC 4 cut(s) 240, 811, 989, 1224
EaeI YGGCCR 1 cut(s) 372
Eam1104I CTCTTC 3 cut(s) 360, 922, 942
EarI CTCTTC 3 cut(s) 360, 922, 942
EciI GGCGGA 2 cut(s) 269, 431
Eco130I CCWWGG 1 cut(s) 664
Eco32I GATATC 1 cut(s) 1015
Eco81I CCTNAGG 1 cut(s) 1158
EcoRI GAATTC 1 cut(s) 911
EcoRII CCWGG 2 cut(s) 175, 374
EcoRV GATATC 1 cut(s) 1015
EcoT14I CCWWGG 1 cut(s) 664
ErhI CCWWGG 1 cut(s) 664
FaeI CATG 7 cut(s) 208, 586, 627, 668, 1021, 1033, 1126
FaqI GGGAC 2 cut(s) 704, 1465
FatI CATG 7 cut(s) 204, 582, 623, 664, 1017, 1029, 1122
FauI CCCGC 1 cut(s) 373
FblI GTMKAC 1 cut(s) 859
Fnu4HI GCNGC 5 cut(s) 287, 530, 753, 996, 1383
FokI GGATG 5 cut(s) 19, 551, 716, 971, 1037
Fsp4HI GCNGC 5 cut(s) 287, 530, 753, 996, 1383
FspBI CTAG 4 cut(s) 701, 1274, 1332, 1416
FspI TGCGCA 1 cut(s) 224
GlaI GCGC 1 cut(s) 224
GluI GCNGC 5 cut(s) 287, 530, 753, 996, 1383
HaeIII GGCC 2 cut(s) 374, 483
HapII CCGG 1 cut(s) 773
HgaI GACGC 1 cut(s) 450
HhaI GCGC 1 cut(s) 225
Hin1II CATG 7 cut(s) 208, 586, 627, 668, 1021, 1033, 1126
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HincII GTYRAC 4 cut(s) 601, 781, 1413, 1482
HindII GTYRAC 4 cut(s) 601, 781, 1413, 1482
HindIII AAGCTT 2 cut(s) 317, 900
HinfI GANTC 5 cut(s) 276, 391, 419, 437, 1267
HpaII CCGG 1 cut(s) 773
HphI GGTGA 1 cut(s) 1186
Hpy166II GTNNAC 7 cut(s) 577, 601, 761, 781, 860, 1413, 1482
Hpy188I TCNGA 3 cut(s) 21, 654, 984
Hpy188III TCNNGA 5 cut(s) 583, 809, 941, 956, 1247
Hpy8I GTNNAC 7 cut(s) 577, 601, 761, 781, 860, 1413, 1482
Hpy99I CGWCG 4 cut(s) 25, 40, 466, 529
HpyAV CCTTC 5 cut(s) 73, 486, 634, 743, 1254
HpyCH4III ACNGT 3 cut(s) 785, 1010, 1393
HpyCH4IV ACGT 4 cut(s) 51, 129, 850, 1378
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 210, 529, 1438
HpyF3I CTNAG 6 cut(s) 244, 354, 981, 1158, 1467, 1491
HpySE526I ACGT 4 cut(s) 51, 129, 850, 1378
Hsp92II CATG 7 cut(s) 208, 586, 627, 668, 1021, 1033, 1126
HspAI GCGC 1 cut(s) 223
Kzo9I GATC 4 cut(s) 240, 811, 989, 1224
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 4 cut(s) 152, 637, 1082, 1149
Lsp1109I GCAGC 5 cut(s) 298, 541, 764, 982, 1369
LweI GCATC 2 cut(s) 738, 1390
MabI ACCWGGT 1 cut(s) 175
MaeI CTAG 4 cut(s) 701, 1274, 1332, 1416
MaeII ACGT 4 cut(s) 51, 129, 850, 1378
MaeIII GTNAC 2 cut(s) 447, 885
MalI GATC 4 cut(s) 242, 813, 991, 1226
MboI GATC 4 cut(s) 240, 811, 989, 1224
MfeI CAATTG 1 cut(s) 873
MflI RGATCY 1 cut(s) 811
MlsI TGGCCA 1 cut(s) 374
MluCI AATT 6 cut(s) 42, 82, 157, 873, 911, 1107
MluNI TGGCCA 1 cut(s) 374
MmeI TCCRAC 2 cut(s) 44, 246
Mox20I TGGCCA 1 cut(s) 374
MroXI GAANNNNTTC 2 cut(s) 62, 644
MscI TGGCCA 1 cut(s) 374
MseI TTAA 1 cut(s) 549
Msp20I TGGCCA 1 cut(s) 374
MspA1I CMGCKG 1 cut(s) 289
MspI CCGG 1 cut(s) 773
MspR9I CCNGG 3 cut(s) 177, 376, 774
MunI CAATTG 1 cut(s) 873
MvaI CCWGG 2 cut(s) 177, 376
MvnI CGCG 1 cut(s) 309
MwoI GCNNNNNNNGC 4 cut(s) 37, 210, 529, 1438
NciI CCSGG 1 cut(s) 774
NcoI CCATGG 1 cut(s) 664
NdeII GATC 4 cut(s) 240, 811, 989, 1224
NheI GCTAGC 1 cut(s) 1273
NlaIII CATG 7 cut(s) 208, 586, 627, 668, 1021, 1033, 1126
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 447
NsbI TGCGCA 1 cut(s) 224
NspV TTCGAA 1 cut(s) 322
PagI TCATGA 1 cut(s) 582
PciSI GCTCTTC 1 cut(s) 360
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PdmI GAANNNNTTC 2 cut(s) 62, 644
PfeI GAWTC 5 cut(s) 276, 391, 419, 437, 1267
PkrI GCNGC 5 cut(s) 288, 531, 754, 997, 1384
Ppu21I YACGTR 1 cut(s) 851
Psp6I CCWGG 2 cut(s) 175, 374
PspGI CCWGG 2 cut(s) 175, 374
PspN4I GGNNCC 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 1490
PsuI RGATCY 1 cut(s) 811
PvuII CAGCTG 1 cut(s) 289
RsaI GTAC 2 cut(s) 411, 578
RsaNI GTAC 2 cut(s) 410, 577
SapI GCTCTTC 1 cut(s) 360
SaqAI TTAA 1 cut(s) 549
SatI GCNGC 5 cut(s) 287, 530, 753, 996, 1383
Sau3AI GATC 4 cut(s) 240, 811, 989, 1224
ScrFI CCNGG 3 cut(s) 177, 376, 774
SexAI ACCWGGT 1 cut(s) 175
SfaNI GCATC 2 cut(s) 738, 1390
SfcI CTRYAG 1 cut(s) 1139
SfuI TTCGAA 1 cut(s) 322
SmlI CTYRAG 2 cut(s) 721, 807
SmoI CTYRAG 2 cut(s) 721, 807
Sse9I AATT 6 cut(s) 42, 82, 157, 873, 911, 1107
SsiI CCGC 5 cut(s) 254, 380, 416, 684, 919
SspMI CTAG 4 cut(s) 701, 1274, 1332, 1416
StyD4I CCNGG 3 cut(s) 175, 374, 772
StyI CCWWGG 1 cut(s) 664
TaaI ACNGT 3 cut(s) 785, 1010, 1393
TaiI ACGT 4 cut(s) 54, 132, 853, 1381
TaqI TCGA 2 cut(s) 71, 322
TasI AATT 6 cut(s) 42, 82, 157, 873, 911, 1107
TatI WGTACW 1 cut(s) 576
TfiI GAWTC 5 cut(s) 276, 391, 419, 437, 1267
Tru1I TTAA 1 cut(s) 549
Tru9I TTAA 1 cut(s) 549
TscAI CASTG 2 cut(s) 748, 1079
TseFI GTSAC 1 cut(s) 447
TseI GCWGC 5 cut(s) 286, 529, 752, 995, 1382
Tsp45I GTSAC 1 cut(s) 447
TspDTI ATGAA 5 cut(s) 55, 571, 689, 1367, 1476
TspGWI ACGGA 3 cut(s) 624, 1043, 1199
TspRI CASTG 2 cut(s) 748, 1079
XapI RAATTY 3 cut(s) 42, 82, 911
XcmI CCANNNNNNNNNTGG 1 cut(s) 496
XmiI GTMKAC 1 cut(s) 859
XmnI GAANNNNTTC 2 cut(s) 62, 644
XspI CTAG 4 cut(s) 701, 1274, 1332, 1416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.