DEAD-box ATP-dependent RNA helicase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G71280 AT1G71280 AT1G71370 AT5G05450 |
| fragaria_vesca | FvH4_6g01590 FvH4_6g01590 FvH4_6g01590 FvH4_6g03480 FvH4_7g25130 FvH4_7g25130 FvH4_7g25130 |
| malus_domestica | MD01G1158100.v1.1 MD07G1226800.v1.1 |
| prunus_persica | Prupe.2G256400_v2.0.a1 |
| pyrus_communis | pycom01g17480 pycom07g20540 |
| rosa_chinensis | RchiOBHm_Chr1g0371021 RchiOBHm_Chr1g0371031 |
| rosa_laevigata | RLG00000026991 |
| rosa_multiflora | Rmu_co8450187.1_g000001 Rmu_sc0001018.1_g000027 Rmu_sc0003272.1_g000004 |
| rosa_roxburghii | Rroxscaffold_4G00286030 |
| rosa_rugosa | Rorug01G0360900 |
| rosa_samantha | Rh1AG371200 Rh1BG334700 Rh1CG348000 Rh1DG365900 |
| rosa_wichuraiana | Rw1G032650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 224 |
| AccI | GTMKAC | 1 cut(s) | 859 |
| AccII | CGCG | 1 cut(s) | 309 |
| AciI | CCGC | 5 cut(s) | 254, 380, 416, 684, 919 |
| AclWI | GGATC | 1 cut(s) | 806 |
| AcoI | YGGCCR | 1 cut(s) | 372 |
| AcsI | RAATTY | 3 cut(s) | 42, 82, 911 |
| AfaI | GTAC | 2 cut(s) | 411, 578 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 381 |
| AgsI | TTSAA | 8 cut(s) | 88, 365, 407, 640, 649, 941, 1106, 1397 |
| AjiI | CACGTC | 2 cut(s) | 130, 1379 |
| AjnI | CCWGG | 2 cut(s) | 175, 374 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1092, 1124 |
| Alw26I | GTCTC | 1 cut(s) | 564 |
| AlwI | GGATC | 1 cut(s) | 806 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1490 |
| AoxI | GGCC | 2 cut(s) | 372, 481 |
| ApeKI | GCWGC | 5 cut(s) | 286, 529, 752, 995, 1382 |
| ApoI | RAATTY | 3 cut(s) | 42, 82, 911 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 316, 348 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 62, 644 |
| AspLEI | GCGC | 1 cut(s) | 225 |
| AsuC2I | CCSGG | 1 cut(s) | 774 |
| AsuHPI | GGTGA | 1 cut(s) | 1186 |
| AsuII | TTCGAA | 1 cut(s) | 322 |
| AsuNHI | GCTAGC | 1 cut(s) | 1273 |
| AxyI | CCTNAGG | 1 cut(s) | 1158 |
| BalI | TGGCCA | 1 cut(s) | 374 |
| BauI | CACGAG | 1 cut(s) | 1245 |
| BbvI | GCAGC | 5 cut(s) | 298, 541, 764, 982, 1369 |
| BceAI | ACGGC | 1 cut(s) | 508 |
| BciT130I | CCWGG | 2 cut(s) | 177, 376 |
| BcnI | CCSGG | 1 cut(s) | 774 |
| BcoDI | GTCTC | 1 cut(s) | 564 |
| BfaI | CTAG | 4 cut(s) | 701, 1274, 1332, 1416 |
| BfmI | CTRYAG | 1 cut(s) | 1139 |
| BisI | GCNGC | 5 cut(s) | 287, 530, 753, 996, 1383 |
| BlsI | GCNGC | 5 cut(s) | 288, 531, 754, 997, 1384 |
| Bme1390I | CCNGG | 3 cut(s) | 177, 376, 774 |
| BmgBI | CACGTC | 2 cut(s) | 130, 1379 |
| BmiI | GGNNCC | 1 cut(s) | 154 |
| BmrFI | CCNGG | 3 cut(s) | 177, 376, 774 |
| BmrI | ACTGGG | 1 cut(s) | 616 |
| BmsI | GCATC | 2 cut(s) | 738, 1390 |
| BmtI | GCTAGC | 1 cut(s) | 1277 |
| BmuI | ACTGGG | 1 cut(s) | 616 |
| Bpu14I | TTCGAA | 1 cut(s) | 322 |
| BpuEI | CTTGAG | 2 cut(s) | 706, 792 |
| BpuMI | CCSGG | 1 cut(s) | 774 |
| BsaAI | YACGTR | 1 cut(s) | 851 |
| BsaBI | GATNNNNATC | 2 cut(s) | 239, 648 |
| BsaJI | CCNNGG | 4 cut(s) | 375, 664, 757, 1182 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 102, 132, 1061, 1091, 1128, 1158 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 381 |
| Bse1I | ACTGG | 2 cut(s) | 334, 611 |
| Bse21I | CCTNAGG | 1 cut(s) | 1158 |
| Bse3DI | GCAATG | 2 cut(s) | 74, 1158 |
| Bse8I | GATNNNNATC | 2 cut(s) | 239, 648 |
| BseBI | CCWGG | 2 cut(s) | 177, 376 |
| BseDI | CCNNGG | 4 cut(s) | 375, 664, 757, 1182 |
| BseGI | GGATG | 5 cut(s) | 12, 544, 729, 964, 1050 |
| BseJI | GATNNNNATC | 2 cut(s) | 239, 648 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 381 |
| BseMI | GCAATG | 2 cut(s) | 74, 1158 |
| BseMII | CTCAG | 5 cut(s) | 345, 995, 1149, 1458, 1482 |
| BseNI | ACTGG | 2 cut(s) | 334, 611 |
| BseRI | GAGGAG | 2 cut(s) | 161, 1235 |
| BseXI | GCAGC | 5 cut(s) | 298, 541, 764, 982, 1369 |
| BsgI | GTGCAG | 1 cut(s) | 812 |
| Bsh1236I | CGCG | 1 cut(s) | 309 |
| BshFI | GGCC | 2 cut(s) | 374, 483 |
| BsiSI | CCGG | 1 cut(s) | 773 |
| BslFI | GGGAC | 2 cut(s) | 704, 1465 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 381 |
| BsmAI | GTCTC | 1 cut(s) | 564 |
| BsmFI | GGGAC | 2 cut(s) | 704, 1465 |
| BsnI | GGCC | 2 cut(s) | 374, 483 |
| Bsp119I | TTCGAA | 1 cut(s) | 322 |
| Bsp143I | GATC | 4 cut(s) | 240, 811, 989, 1224 |
| Bsp19I | CCATGG | 1 cut(s) | 664 |
| BspACI | CCGC | 5 cut(s) | 254, 380, 416, 684, 919 |
| BspANI | GGCC | 2 cut(s) | 374, 483 |
| BspCNI | CTCAG | 5 cut(s) | 346, 994, 1150, 1459, 1483 |
| BspFNI | CGCG | 1 cut(s) | 309 |
| BspHI | TCATGA | 1 cut(s) | 582 |
| BspLI | GGNNCC | 1 cut(s) | 154 |
| BspOI | GCTAGC | 1 cut(s) | 1277 |
| BspPI | GGATC | 1 cut(s) | 806 |
| BspQI | GCTCTTC | 1 cut(s) | 360 |
| BspT104I | TTCGAA | 1 cut(s) | 322 |
| BsrDI | GCAATG | 2 cut(s) | 74, 1158 |
| BsrI | ACTGG | 2 cut(s) | 334, 611 |
| BssECI | CCNNGG | 4 cut(s) | 375, 664, 757, 1182 |
| BssMI | GATC | 4 cut(s) | 240, 811, 989, 1224 |
| BssSI | CACGAG | 1 cut(s) | 1245 |
| BssT1I | CCWWGG | 1 cut(s) | 664 |
| Bst2BI | CACGAG | 1 cut(s) | 1245 |
| Bst2UI | CCWGG | 2 cut(s) | 177, 376 |
| Bst4CI | ACNGT | 3 cut(s) | 785, 1010, 1393 |
| Bst6I | CTCTTC | 3 cut(s) | 360, 922, 942 |
| BstBAI | YACGTR | 1 cut(s) | 851 |
| BstBI | TTCGAA | 1 cut(s) | 322 |
| BstC8I | GCNNGC | 4 cut(s) | 311, 372, 1275, 1430 |
| BstDEI | CTNAG | 6 cut(s) | 244, 354, 981, 1158, 1467, 1491 |
| BstDSI | CCRYGG | 3 cut(s) | 664, 757, 1182 |
| BstF5I | GGATG | 5 cut(s) | 12, 544, 729, 964, 1050 |
| BstFNI | CGCG | 1 cut(s) | 309 |
| BstHHI | GCGC | 1 cut(s) | 225 |
| BstKTI | GATC | 4 cut(s) | 243, 814, 992, 1227 |
| BstMAI | GTCTC | 1 cut(s) | 564 |
| BstMBI | GATC | 4 cut(s) | 240, 811, 989, 1224 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 37, 210, 529, 1438 |
| BstNI | CCWGG | 2 cut(s) | 177, 376 |
| BstSCI | CCNGG | 3 cut(s) | 175, 374, 772 |
| BstSFI | CTRYAG | 1 cut(s) | 1139 |
| BstUI | CGCG | 1 cut(s) | 309 |
| BstV1I | GCAGC | 5 cut(s) | 298, 541, 764, 982, 1369 |
| BstX2I | RGATCY | 1 cut(s) | 811 |
| BstYI | RGATCY | 1 cut(s) | 811 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1158 |
| BsuRI | GGCC | 2 cut(s) | 374, 483 |
| BtgI | CCRYGG | 3 cut(s) | 664, 757, 1182 |
| BtrI | CACGTC | 2 cut(s) | 130, 1379 |
| BtsCI | GGATG | 5 cut(s) | 12, 544, 729, 964, 1050 |
| BtsI | GCAGTG | 1 cut(s) | 1072 |
| BtsIMutI | CAGTG | 2 cut(s) | 741, 1072 |
| Cac8I | GCNNGC | 4 cut(s) | 311, 372, 1275, 1430 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1490 |
| CciI | TCATGA | 1 cut(s) | 582 |
| CfoI | GCGC | 1 cut(s) | 225 |
| CseI | GACGC | 1 cut(s) | 450 |
| CsiI | ACCWGGT | 1 cut(s) | 175 |
| Csp6I | GTAC | 2 cut(s) | 410, 577 |
| CviAII | CATG | 7 cut(s) | 205, 583, 624, 665, 1018, 1030, 1123 |
| CviQI | GTAC | 2 cut(s) | 410, 577 |
| DdeI | CTNAG | 6 cut(s) | 244, 354, 981, 1158, 1467, 1491 |
| DpnI | GATC | 4 cut(s) | 242, 813, 991, 1226 |
| DpnII | GATC | 4 cut(s) | 240, 811, 989, 1224 |
| EaeI | YGGCCR | 1 cut(s) | 372 |
| Eam1104I | CTCTTC | 3 cut(s) | 360, 922, 942 |
| EarI | CTCTTC | 3 cut(s) | 360, 922, 942 |
| EciI | GGCGGA | 2 cut(s) | 269, 431 |
| Eco130I | CCWWGG | 1 cut(s) | 664 |
| Eco32I | GATATC | 1 cut(s) | 1015 |
| Eco81I | CCTNAGG | 1 cut(s) | 1158 |
| EcoRI | GAATTC | 1 cut(s) | 911 |
| EcoRII | CCWGG | 2 cut(s) | 175, 374 |
| EcoRV | GATATC | 1 cut(s) | 1015 |
| EcoT14I | CCWWGG | 1 cut(s) | 664 |
| ErhI | CCWWGG | 1 cut(s) | 664 |
| FaeI | CATG | 7 cut(s) | 208, 586, 627, 668, 1021, 1033, 1126 |
| FaqI | GGGAC | 2 cut(s) | 704, 1465 |
| FatI | CATG | 7 cut(s) | 204, 582, 623, 664, 1017, 1029, 1122 |
| FauI | CCCGC | 1 cut(s) | 373 |
| FblI | GTMKAC | 1 cut(s) | 859 |
| Fnu4HI | GCNGC | 5 cut(s) | 287, 530, 753, 996, 1383 |
| FokI | GGATG | 5 cut(s) | 19, 551, 716, 971, 1037 |
| Fsp4HI | GCNGC | 5 cut(s) | 287, 530, 753, 996, 1383 |
| FspBI | CTAG | 4 cut(s) | 701, 1274, 1332, 1416 |
| FspI | TGCGCA | 1 cut(s) | 224 |
| GlaI | GCGC | 1 cut(s) | 224 |
| GluI | GCNGC | 5 cut(s) | 287, 530, 753, 996, 1383 |
| HaeIII | GGCC | 2 cut(s) | 374, 483 |
| HapII | CCGG | 1 cut(s) | 773 |
| HgaI | GACGC | 1 cut(s) | 450 |
| HhaI | GCGC | 1 cut(s) | 225 |
| Hin1II | CATG | 7 cut(s) | 208, 586, 627, 668, 1021, 1033, 1126 |
| Hin6I | GCGC | 1 cut(s) | 223 |
| HinP1I | GCGC | 1 cut(s) | 223 |
| HincII | GTYRAC | 4 cut(s) | 601, 781, 1413, 1482 |
| HindII | GTYRAC | 4 cut(s) | 601, 781, 1413, 1482 |
| HindIII | AAGCTT | 2 cut(s) | 317, 900 |
| HinfI | GANTC | 5 cut(s) | 276, 391, 419, 437, 1267 |
| HpaII | CCGG | 1 cut(s) | 773 |
| HphI | GGTGA | 1 cut(s) | 1186 |
| Hpy166II | GTNNAC | 7 cut(s) | 577, 601, 761, 781, 860, 1413, 1482 |
| Hpy188I | TCNGA | 3 cut(s) | 21, 654, 984 |
| Hpy188III | TCNNGA | 5 cut(s) | 583, 809, 941, 956, 1247 |
| Hpy8I | GTNNAC | 7 cut(s) | 577, 601, 761, 781, 860, 1413, 1482 |
| Hpy99I | CGWCG | 4 cut(s) | 25, 40, 466, 529 |
| HpyAV | CCTTC | 5 cut(s) | 73, 486, 634, 743, 1254 |
| HpyCH4III | ACNGT | 3 cut(s) | 785, 1010, 1393 |
| HpyCH4IV | ACGT | 4 cut(s) | 51, 129, 850, 1378 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 37, 210, 529, 1438 |
| HpyF3I | CTNAG | 6 cut(s) | 244, 354, 981, 1158, 1467, 1491 |
| HpySE526I | ACGT | 4 cut(s) | 51, 129, 850, 1378 |
| Hsp92II | CATG | 7 cut(s) | 208, 586, 627, 668, 1021, 1033, 1126 |
| HspAI | GCGC | 1 cut(s) | 223 |
| Kzo9I | GATC | 4 cut(s) | 240, 811, 989, 1224 |
| LguI | GCTCTTC | 1 cut(s) | 360 |
| LmnI | GCTCC | 4 cut(s) | 152, 637, 1082, 1149 |
| Lsp1109I | GCAGC | 5 cut(s) | 298, 541, 764, 982, 1369 |
| LweI | GCATC | 2 cut(s) | 738, 1390 |
| MabI | ACCWGGT | 1 cut(s) | 175 |
| MaeI | CTAG | 4 cut(s) | 701, 1274, 1332, 1416 |
| MaeII | ACGT | 4 cut(s) | 51, 129, 850, 1378 |
| MaeIII | GTNAC | 2 cut(s) | 447, 885 |
| MalI | GATC | 4 cut(s) | 242, 813, 991, 1226 |
| MboI | GATC | 4 cut(s) | 240, 811, 989, 1224 |
| MfeI | CAATTG | 1 cut(s) | 873 |
| MflI | RGATCY | 1 cut(s) | 811 |
| MlsI | TGGCCA | 1 cut(s) | 374 |
| MluCI | AATT | 6 cut(s) | 42, 82, 157, 873, 911, 1107 |
| MluNI | TGGCCA | 1 cut(s) | 374 |
| MmeI | TCCRAC | 2 cut(s) | 44, 246 |
| Mox20I | TGGCCA | 1 cut(s) | 374 |
| MroXI | GAANNNNTTC | 2 cut(s) | 62, 644 |
| MscI | TGGCCA | 1 cut(s) | 374 |
| MseI | TTAA | 1 cut(s) | 549 |
| Msp20I | TGGCCA | 1 cut(s) | 374 |
| MspA1I | CMGCKG | 1 cut(s) | 289 |
| MspI | CCGG | 1 cut(s) | 773 |
| MspR9I | CCNGG | 3 cut(s) | 177, 376, 774 |
| MunI | CAATTG | 1 cut(s) | 873 |
| MvaI | CCWGG | 2 cut(s) | 177, 376 |
| MvnI | CGCG | 1 cut(s) | 309 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 37, 210, 529, 1438 |
| NciI | CCSGG | 1 cut(s) | 774 |
| NcoI | CCATGG | 1 cut(s) | 664 |
| NdeII | GATC | 4 cut(s) | 240, 811, 989, 1224 |
| NheI | GCTAGC | 1 cut(s) | 1273 |
| NlaIII | CATG | 7 cut(s) | 208, 586, 627, 668, 1021, 1033, 1126 |
| NlaIV | GGNNCC | 1 cut(s) | 154 |
| NmuCI | GTSAC | 1 cut(s) | 447 |
| NsbI | TGCGCA | 1 cut(s) | 224 |
| NspV | TTCGAA | 1 cut(s) | 322 |
| PagI | TCATGA | 1 cut(s) | 582 |
| PciSI | GCTCTTC | 1 cut(s) | 360 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 77 |
| PdmI | GAANNNNTTC | 2 cut(s) | 62, 644 |
| PfeI | GAWTC | 5 cut(s) | 276, 391, 419, 437, 1267 |
| PkrI | GCNGC | 5 cut(s) | 288, 531, 754, 997, 1384 |
| Ppu21I | YACGTR | 1 cut(s) | 851 |
| Psp6I | CCWGG | 2 cut(s) | 175, 374 |
| PspGI | CCWGG | 2 cut(s) | 175, 374 |
| PspN4I | GGNNCC | 1 cut(s) | 154 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1490 |
| PsuI | RGATCY | 1 cut(s) | 811 |
| PvuII | CAGCTG | 1 cut(s) | 289 |
| RsaI | GTAC | 2 cut(s) | 411, 578 |
| RsaNI | GTAC | 2 cut(s) | 410, 577 |
| SapI | GCTCTTC | 1 cut(s) | 360 |
| SaqAI | TTAA | 1 cut(s) | 549 |
| SatI | GCNGC | 5 cut(s) | 287, 530, 753, 996, 1383 |
| Sau3AI | GATC | 4 cut(s) | 240, 811, 989, 1224 |
| ScrFI | CCNGG | 3 cut(s) | 177, 376, 774 |
| SexAI | ACCWGGT | 1 cut(s) | 175 |
| SfaNI | GCATC | 2 cut(s) | 738, 1390 |
| SfcI | CTRYAG | 1 cut(s) | 1139 |
| SfuI | TTCGAA | 1 cut(s) | 322 |
| SmlI | CTYRAG | 2 cut(s) | 721, 807 |
| SmoI | CTYRAG | 2 cut(s) | 721, 807 |
| Sse9I | AATT | 6 cut(s) | 42, 82, 157, 873, 911, 1107 |
| SsiI | CCGC | 5 cut(s) | 254, 380, 416, 684, 919 |
| SspMI | CTAG | 4 cut(s) | 701, 1274, 1332, 1416 |
| StyD4I | CCNGG | 3 cut(s) | 175, 374, 772 |
| StyI | CCWWGG | 1 cut(s) | 664 |
| TaaI | ACNGT | 3 cut(s) | 785, 1010, 1393 |
| TaiI | ACGT | 4 cut(s) | 54, 132, 853, 1381 |
| TaqI | TCGA | 2 cut(s) | 71, 322 |
| TasI | AATT | 6 cut(s) | 42, 82, 157, 873, 911, 1107 |
| TatI | WGTACW | 1 cut(s) | 576 |
| TfiI | GAWTC | 5 cut(s) | 276, 391, 419, 437, 1267 |
| Tru1I | TTAA | 1 cut(s) | 549 |
| Tru9I | TTAA | 1 cut(s) | 549 |
| TscAI | CASTG | 2 cut(s) | 748, 1079 |
| TseFI | GTSAC | 1 cut(s) | 447 |
| TseI | GCWGC | 5 cut(s) | 286, 529, 752, 995, 1382 |
| Tsp45I | GTSAC | 1 cut(s) | 447 |
| TspDTI | ATGAA | 5 cut(s) | 55, 571, 689, 1367, 1476 |
| TspGWI | ACGGA | 3 cut(s) | 624, 1043, 1199 |
| TspRI | CASTG | 2 cut(s) | 748, 1079 |
| XapI | RAATTY | 3 cut(s) | 42, 82, 911 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 496 |
| XmiI | GTMKAC | 1 cut(s) | 859 |
| XmnI | GAANNNNTTC | 2 cut(s) | 62, 644 |
| XspI | CTAG | 4 cut(s) | 701, 1274, 1332, 1416 |