Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005793

Physical Location & Seq

Genomic Coordinates Forward (+)

201367 .. 206496

Gene Structure 5130 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G003000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGATGACGATTTCACACGCCCGCCCCGGCTTATGAGCTTCGTTTCTGAGGAACAGTTGGATGAAGCAAAGAGAACAAGGGGCGAACGGGTTGAGGATGGCACTGCCCAGAGAGACAGACCTCTTTTCGAGATTTTAAAAGAAAATAAAGATAAGAAGGATGCAGAGTTCAATGAACGTTTCAAGCACAGACCACCCAAAGCCTTGGATGATGATGAGACCGAGTTCCTTGATACTTTAGAGAATTCAAGGAAGGAATATGAGCGAAAGATTGCAGATGAGGAAGCCCAACAACTTCTGAGTTTCCAGGCAGCCGTGGTAGCAAAGTCTAGCATTGTACAAGAGCTTCAGGAAACACCTTCTGTTCCTATAATACAGGAACAGAAATCAGCTGGGAAGAGGAATCCACCTCCTCGTCCATTAGGTATGATTATTAAGGTGAAGCCACAAGCAAAGAAAGCTAAAATTGATCAGGGAGGTGGTGAAGAACCCACAAACACAGTGACAACCCCACATGTAGATACAGACAAAAGTTTAGAGGTAATGAAGACACCTAATAGTGATACTGATAAGTCCAGTGTTGTTGCGAAGACAGGCCTTGTTTCCTATAGTGACGAGAGTGAAGATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nefa_Nip30_N

Protein Analysis

211

Amino Acids

23.73

Weight (kDa)

4.9

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62140
fragaria_vesca	FvH4_1g26260 FvH4_1g26260 FvH4_1g26260 FvH4_1g26260
malus_domestica	MD17G1284800.v1.1
prunus_persica	Prupe.3G003000_v2.0.a1 Prupe.3G003000_v2.0.a1
pyrus_communis	pycom17g28060
rosa_chinensis	RchiOBHm_Chr3g0485921
rosa_laevigata	RLG00000023122
rosa_multiflora	Rmu_sc0004876.1_g000003 Rmu_sc0008757.1_g000021 Rmu_sc0017529.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297600 Rroxscaffold_6G00396200
rosa_rugosa	Rorug01G0265400 Rorug03G0222500 Rorug03G0222600
rosa_samantha	Rh1CG263400 Rh1DG274400 Rh3AG271800 Rh3BG306900 Rh3CG305500 Rh3DG301500
rosa_wichuraiana	Rw0G015520 Rw1G024840 Rw3G024150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	23
AclI	AACGTT	1 cut(s)	178
AcsI	RAATTY	1 cut(s)	244
AcuI	CTGAAG	1 cut(s)	332
AfaI	GTAC	1 cut(s)	339
AflIII	ACRYGT	1 cut(s)	514
AgsI	TTSAA	3 cut(s)	172, 184, 249
AjnI	CCWGG	1 cut(s)	306
AloI	GAACNNNNNNTCC	2 cut(s)	152, 184
AluBI	AGCT	4 cut(s)	39, 346, 392, 461
AluI	AGCT	4 cut(s)	39, 346, 392, 461
Alw26I	GTCTC	2 cut(s)	108, 212
AoxI	GGCC	1 cut(s)	595
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	244
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	2 cut(s)	451, 494
BarI	GAAGNNNNNNTAC	2 cut(s)	330, 362
BbsI	GAAGAC	2 cut(s)	554, 596
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	299
BciT130I	CCWGG	1 cut(s)	308
BclI	TGATCA	1 cut(s)	469
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	2 cut(s)	108, 212
BfaI	CTAG	2 cut(s)	330, 631
BfmI	CTRYAG	1 cut(s)	607
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	2 cut(s)	28, 308
BmrFI	CCNGG	2 cut(s)	28, 308
BmsI	GCATC	1 cut(s)	151
BpiI	GAAGAC	2 cut(s)	554, 596
BpuMI	CCSGG	1 cut(s)	28
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	3 cut(s)	26, 204, 315
Bse1I	ACTGG	1 cut(s)	576
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	3 cut(s)	26, 204, 315
BseGI	GGATG	5 cut(s)	10, 67, 103, 166, 214
BseMII	CTCAG	2 cut(s)	39, 290
BseNI	ACTGG	1 cut(s)	576
BseRI	GAGGAG	1 cut(s)	402
BseXI	GCAGC	1 cut(s)	323
BseYI	CCCAGC	1 cut(s)	392
BshFI	GGCC	1 cut(s)	597
BsiSI	CCGG	1 cut(s)	28
BsmAI	GTCTC	2 cut(s)	108, 212
BsnI	GGCC	1 cut(s)	597
Bso31I	GGTCTC	1 cut(s)	212
Bsp1407I	TGTACA	1 cut(s)	337
Bsp143I	GATC	1 cut(s)	469
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	1 cut(s)	597
BspCNI	CTCAG	2 cut(s)	40, 291
BspTNI	GGTCTC	1 cut(s)	212
BsrGI	TGTACA	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	576
BssECI	CCNNGG	3 cut(s)	26, 204, 315
BssMI	GATC	1 cut(s)	469
BssT1I	CCWWGG	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	57, 502
Bst6I	CTCTTC	1 cut(s)	392
BstAUI	TGTACA	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	2 cut(s)	48, 299
BstDSI	CCRYGG	1 cut(s)	315
BstF5I	GGATG	5 cut(s)	10, 67, 103, 166, 214
BstKTI	GATC	1 cut(s)	472
BstMAI	GTCTC	2 cut(s)	108, 212
BstMBI	GATC	1 cut(s)	469
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 458
BstNI	CCWGG	1 cut(s)	308
BstNSI	RCATGY	1 cut(s)	518
BstSCI	CCNGG	2 cut(s)	26, 306
BstSFI	CTRYAG	1 cut(s)	607
BstV1I	GCAGC	1 cut(s)	323
BstV2I	GAAGAC	2 cut(s)	554, 596
BstXI	CCANNNNNNTGG	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	597
BtgI	CCRYGG	1 cut(s)	315
BtsCI	GGATG	5 cut(s)	10, 67, 103, 166, 214
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	3 cut(s)	102, 507, 583
Cac8I	GCNNGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	338
CviAII	CATG	1 cut(s)	515
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	2 cut(s)	48, 299
DpnI	GATC	1 cut(s)	471
DpnII	GATC	1 cut(s)	469
DraI	TTTAAA	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	204
Eco147I	AGGCCT	1 cut(s)	597
Eco31I	GGTCTC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	332
EcoRI	GAATTC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	1 cut(s)	518
FaiI	YATR	6 cut(s)	35, 261, 371, 428, 516, 609
FatI	CATG	1 cut(s)	514
FauI	CCCGC	1 cut(s)	30
FbaI	TGATCA	1 cut(s)	469
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	5 cut(s)	17, 74, 110, 173, 221
Fsp4HI	GCNGC	1 cut(s)	312
FspBI	CTAG	2 cut(s)	330, 631
GluI	GCNGC	1 cut(s)	312
GsaI	CCCAGC	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	597
HapII	CCGG	1 cut(s)	28
Hin1II	CATG	1 cut(s)	518
HinfI	GANTC	1 cut(s)	403
HpaII	CCGG	1 cut(s)	28
HphI	GGTGA	2 cut(s)	451, 494
Hpy188I	TCNGA	2 cut(s)	49, 300
Hpy188III	TCNNGA	2 cut(s)	130, 350
HpyAV	CCTTC	3 cut(s)	151, 247, 369
HpyCH4III	ACNGT	2 cut(s)	57, 502
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	2 cut(s)	164, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 458
HpyF3I	CTNAG	2 cut(s)	48, 299
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	1 cut(s)	518
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	1 cut(s)	469
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	2 cut(s)	330, 631
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	2 cut(s)	502, 611
MalI	GATC	1 cut(s)	471
MboI	GATC	1 cut(s)	469
MboII	GAAGA	4 cut(s)	409, 497, 559, 601
MluCI	AATT	2 cut(s)	244, 465
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	9 cut(s)	43, 88, 132, 274, 393, 420, 423, 470, 532
MseI	TTAA	2 cut(s)	137, 435
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	1 cut(s)	28
MspR9I	CCNGG	2 cut(s)	28, 308
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	2 cut(s)	320, 458
NciI	CCSGG	1 cut(s)	28
NdeII	GATC	1 cut(s)	469
NlaIII	CATG	1 cut(s)	518
NmuCI	GTSAC	2 cut(s)	502, 611
NspI	RCATGY	1 cut(s)	518
PceI	AGGCCT	1 cut(s)	597
PciI	ACATGT	1 cut(s)	514
PfeI	GAWTC	1 cut(s)	403
PkrI	GCNGC	1 cut(s)	313
PscI	ACATGT	1 cut(s)	514
Psp1406I	AACGTT	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	306
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	306
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
SaqAI	TTAA	2 cut(s)	137, 435
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	1 cut(s)	469
ScrFI	CCNGG	2 cut(s)	28, 308
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	1 cut(s)	607
Sse9I	AATT	2 cut(s)	244, 465
SseBI	AGGCCT	1 cut(s)	597
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	2 cut(s)	330, 631
StuI	AGGCCT	1 cut(s)	597
StyD4I	CCNGG	2 cut(s)	26, 306
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	57, 502
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	129
TaqII	GACCGA	1 cut(s)	236
TasI	AATT	2 cut(s)	244, 465
TatI	WGTACW	1 cut(s)	337
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	2 cut(s)	137, 435
Tru9I	TTAA	2 cut(s)	137, 435
TscAI	CASTG	3 cut(s)	109, 507, 583
TseFI	GTSAC	2 cut(s)	502, 611
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	2 cut(s)	502, 611
TspDTI	ATGAA	3 cut(s)	78, 189, 560
TspRI	CASTG	3 cut(s)	109, 507, 583
XapI	RAATTY	1 cut(s)	244
XceI	RCATGY	1 cut(s)	518
XspI	CTAG	2 cut(s)	330, 631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.