Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005793

Physical Location & Seq

Genomic Coordinates Reverse (-)

20257498 .. 20258414

Gene Structure 917 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0222500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGCCATGGAACATCACTCTTTGGATGGCCGAGATGGTCTGGTTGGCTCTCACCGGCTGGATCCCCTCTTGCTTGACTGTTGCTGACGAGCTCGCCACCTCCCTCAGAACCGGAGATATCGGCCCTTTCAATGAAACCCATCTTGGGGTTGGTGAGGTTGGGGAAGAGAATGCTAAGGTGAATGCACTGGGAGAAAAGGAAGATATAGCTGTTGTGGAGGAAACCAGATTCGAAAGCGTAGCTGAAACTGATGTTAGCCCAGTAGTTCGTGAGGTTACGAAGATTGTCAGGGCGGAAAATGGTTTGGTTTCGATGGAGGCTAGGAAACGGTTAGACGAGTTGGGTTTTCAGTTAGATTCAGAGATTGTTGACAAAGTTTTGAAGAGGTGCTTTAAAGTGCCACATTTGGCTTTAAGGTTCTTTGATTGGGTGAAGCTGAAAGAAGGGTTCTGCAAGAGAGTTTGGGCTGGTGGAGAAGTTGGTGGAGGATGGAAAGGAACTGGTGCGAGAAAGATGTTAAGACCTGGACCATTCTTATCCAGATGTATGGGAAGGCCAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nefa_Nip30_N

Protein Analysis

187

Amino Acids

20.8

Weight (kDa)

5.83

Isoelectric Point (pI)

42.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62140
fragaria_vesca	FvH4_1g26260 FvH4_1g26260 FvH4_1g26260 FvH4_1g26260
malus_domestica	MD17G1284800.v1.1
prunus_persica	Prupe.3G003000_v2.0.a1 Prupe.3G003000_v2.0.a1
pyrus_communis	pycom17g28060
rosa_chinensis	RchiOBHm_Chr3g0485921
rosa_laevigata	RLG00000023122
rosa_multiflora	Rmu_sc0004876.1_g000003 Rmu_sc0008757.1_g000021 Rmu_sc0017529.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297600 Rroxscaffold_6G00396200
rosa_rugosa	Rorug01G0265400 Rorug03G0222500 Rorug03G0222600
rosa_samantha	Rh1CG263400 Rh1DG274400 Rh3AG271800 Rh3BG306900 Rh3CG305500 Rh3DG301500
rosa_wichuraiana	Rw0G015520 Rw1G024840 Rw3G024150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	293
AclWI	GGATC	2 cut(s)	55, 68
AcoI	YGGCCR	1 cut(s)	27
AfiI	CCNNNNNNNGG	2 cut(s)	144, 145
AgsI	TTSAA	2 cut(s)	130, 382
AjnI	CCWGG	1 cut(s)	523
AjuI	GAANNNNNNNTTGG	2 cut(s)	126, 158
AluBI	AGCT	4 cut(s)	91, 209, 242, 436
AluI	AGCT	4 cut(s)	91, 209, 242, 436
Alw21I	GWGCWC	1 cut(s)	93
AlwI	GGATC	2 cut(s)	55, 68
AoxI	GGCC	3 cut(s)	27, 121, 554
AspS9I	GGNCC	2 cut(s)	122, 527
AsuHPI	GGTGA	4 cut(s)	43, 164, 190, 442
AsuII	TTCGAA	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	527
BamHI	GGATCC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	93
BccI	CCATC	5 cut(s)	19, 28, 147, 307, 483
BciT130I	CCWGG	1 cut(s)	525
BfaI	CTAG	1 cut(s)	321
Bme1390I	CCNGG	1 cut(s)	525
Bme18I	GGWCC	1 cut(s)	527
BmgT120I	GGNCC	2 cut(s)	122, 527
BmiI	GGNNCC	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	525
BmrI	ACTGGG	2 cut(s)	197, 254
BmuI	ACTGGG	2 cut(s)	197, 254
Bpu10I	CCTNAGC	1 cut(s)	174
Bpu14I	TTCGAA	1 cut(s)	231
BsaJI	CCNNGG	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 145
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	3 cut(s)	192, 260, 505
BseBI	CCWGG	1 cut(s)	525
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	2 cut(s)	30, 494
BseLI	CCNNNNNNNGG	2 cut(s)	144, 145
BseMII	CTCAG	1 cut(s)	118
BseNI	ACTGG	3 cut(s)	192, 260, 505
BshFI	GGCC	3 cut(s)	29, 123, 556
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	2 cut(s)	54, 111
BslI	CCNNNNNNNGG	2 cut(s)	144, 145
BsmI	GAATGC	2 cut(s)	175, 187
BsnI	GGCC	3 cut(s)	29, 123, 556
Bsp119I	TTCGAA	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	1 cut(s)	60
Bsp19I	CCATGG	1 cut(s)	5
BspACI	CCGC	1 cut(s)	293
BspANI	GGCC	3 cut(s)	29, 123, 556
BspCNI	CTCAG	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	62
BspPI	GGATC	2 cut(s)	55, 68
BspT104I	TTCGAA	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	3 cut(s)	192, 260, 505
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	1 cut(s)	60
BssT1I	CCWWGG	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	2 cut(s)	79, 330
Bst6I	CTCTTC	2 cut(s)	159, 377
BstBI	TTCGAA	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	2 cut(s)	104, 174
BstDSI	CCRYGG	1 cut(s)	5
BstF5I	GGATG	2 cut(s)	30, 494
BstKTI	GATC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	60
BstNI	CCWGG	1 cut(s)	525
BstSCI	CCNGG	1 cut(s)	523
BstX2I	RGATCY	1 cut(s)	60
BstXI	CCANNNNNNTGG	1 cut(s)	547
BstYI	RGATCY	1 cut(s)	60
BsuRI	GGCC	3 cut(s)	29, 123, 556
BtgI	CCRYGG	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	30, 494
BtsIMutI	CAGTG	1 cut(s)	185
Cac8I	GCNNGC	1 cut(s)	93
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	122, 527
CviAII	CATG	1 cut(s)	6
DdeI	CTNAG	2 cut(s)	104, 174
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
DraI	TTTAAA	1 cut(s)	394
EaeI	YGGCCR	1 cut(s)	27
Eam1104I	CTCTTC	2 cut(s)	159, 377
EarI	CTCTTC	2 cut(s)	159, 377
EciI	GGCGGA	1 cut(s)	308
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	5
Eco24I	GRGCYC	1 cut(s)	93
Eco32I	GATATC	1 cut(s)	118
Eco47I	GGWCC	1 cut(s)	527
Eco53kI	GAGCTC	1 cut(s)	91
EcoICRI	GAGCTC	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	523
EcoRV	GATATC	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	5
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	1 cut(s)	9
FaiI	YATR	3 cut(s)	7, 206, 548
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FatI	CATG	1 cut(s)	5
FokI	GGATG	2 cut(s)	37, 501
FriOI	GRGCYC	1 cut(s)	93
FspBI	CTAG	1 cut(s)	321
HaeIII	GGCC	3 cut(s)	29, 123, 556
HapII	CCGG	2 cut(s)	54, 111
Hin1II	CATG	1 cut(s)	9
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	2 cut(s)	228, 356
HpaII	CCGG	2 cut(s)	54, 111
HphI	GGTGA	4 cut(s)	43, 164, 190, 442
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	2 cut(s)	107, 361
Hpy188III	TCNNGA	2 cut(s)	269, 540
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	2 cut(s)	437, 546
HpyCH4III	ACNGT	2 cut(s)	79, 330
HpyCH4V	TGCA	2 cut(s)	185, 453
HpyF3I	CTNAG	2 cut(s)	104, 174
Hsp92II	CATG	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	60
MaeI	CTAG	1 cut(s)	321
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	4 cut(s)	176, 212, 292, 394
MflI	RGATCY	1 cut(s)	60
MhlI	GDGCHC	1 cut(s)	93
MnlI	CCTC	9 cut(s)	76, 109, 113, 148, 211, 265, 310, 378, 479
MseI	TTAA	3 cut(s)	393, 413, 518
MspI	CCGG	2 cut(s)	54, 111
MspR9I	CCNGG	1 cut(s)	525
Mva1269I	GAATGC	2 cut(s)	175, 187
MvaI	CCWGG	1 cut(s)	525
NcoI	CCATGG	1 cut(s)	5
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	1 cut(s)	9
NlaIV	GGNNCC	1 cut(s)	62
NmeAIII	GCCGAG	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	231
PctI	GAATGC	2 cut(s)	175, 187
PfeI	GAWTC	2 cut(s)	228, 356
Psp124BI	GAGCTC	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	523
PspN4I	GGNNCC	1 cut(s)	62
PspPI	GGNCC	2 cut(s)	122, 527
PsuI	RGATCY	1 cut(s)	60
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	3 cut(s)	393, 413, 518
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	2 cut(s)	122, 527
ScrFI	CCNGG	1 cut(s)	525
SduI	GDGCHC	1 cut(s)	93
SfuI	TTCGAA	1 cut(s)	231
SinI	GGWCC	1 cut(s)	527
SsiI	CCGC	1 cut(s)	293
SspMI	CTAG	1 cut(s)	321
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	523
StyI	CCWWGG	1 cut(s)	5
TaaI	ACNGT	2 cut(s)	79, 330
TaqI	TCGA	2 cut(s)	231, 311
TfiI	GAWTC	2 cut(s)	228, 356
Tru1I	TTAA	3 cut(s)	393, 413, 518
Tru9I	TTAA	3 cut(s)	393, 413, 518
TscAI	CASTG	1 cut(s)	192
TspDTI	ATGAA	1 cut(s)	147
TspRI	CASTG	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	527
XcmI	CCANNNNNNNNNTGG	1 cut(s)	146
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.