Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004876.1

Orthogroup ID

OG0005793

Physical Location & Seq

Genomic Coordinates Reverse (-)

16924 .. 19009

Gene Structure 2086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004876.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atggctgaagatttcacacgcccgcggctcatgaatttcgtttctgaggaacagttagatgaagccaagaaaacccggggtgaacgagtcgaggatggcactgcctaccgggacagaccccttttcgagattctgaaagaaaacaaggacaagaaggatgcggagttcaatgaacgtttcaagcacagaccgccgaaagctttggacgatgacgagacggagtttcttgatcaatgggagacttcaaagaaggaatatgaacgacaggttgcagatgaggaggcccaacaacttttgagttttcaggcagcggtggcagcaaaatctagcattgtacaagagttgacggaaataccttctgttccggtagtcaaggagcagcagaaaccagccgggaagaggaatccacccacttttccattaggtatgattgttaaagtgaagccacaggcgaagaaagctaaaattgatcaagggggcattgaagaagctacaagcacagcgaagaccccttatgttgatacagataaaattttagaggtaaccaagacacctgaggctgatactgataagtccagtgttgtttctaagactggtcttgtttcatacagtgatgatagtgaagatgacttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nefa_Nip30_N

Protein Analysis

211

Amino Acids

23.87

Weight (kDa)

4.84

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62140
fragaria_vesca	FvH4_1g26260 FvH4_1g26260 FvH4_1g26260 FvH4_1g26260
malus_domestica	MD17G1284800.v1.1
prunus_persica	Prupe.3G003000_v2.0.a1 Prupe.3G003000_v2.0.a1
pyrus_communis	pycom17g28060
rosa_chinensis	RchiOBHm_Chr3g0485921
rosa_laevigata	RLG00000023122
rosa_multiflora	Rmu_sc0004876.1_g000003 Rmu_sc0008757.1_g000021 Rmu_sc0017529.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297600 Rroxscaffold_6G00396200
rosa_rugosa	Rorug01G0265400 Rorug03G0222500 Rorug03G0222600
rosa_samantha	Rh1CG263400 Rh1DG274400 Rh3AG271800 Rh3BG306900 Rh3CG305500 Rh3DG301500
rosa_wichuraiana	Rw0G015520 Rw1G024840 Rw3G024150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	25
AciI	CCGC	5 cut(s)	23, 25, 161, 191, 311
AclI	AACGTT	1 cut(s)	175
AcsI	RAATTY	2 cut(s)	34, 531
AcuI	CTGAAG	1 cut(s)	27
AfaI	GTAC	1 cut(s)	336
AfiI	CCNNNNNNNGG	1 cut(s)	399
AgsI	TTSAA	4 cut(s)	169, 181, 246, 485
AloI	GAACNNNNNNTCC	2 cut(s)	149, 181
AluBI	AGCT	3 cut(s)	200, 461, 491
AluI	AGCT	3 cut(s)	200, 461, 491
Alw26I	GTCTC	2 cut(s)	209, 233
Ama87I	CYCGRG	1 cut(s)	75
AoxI	GGCC	1 cut(s)	282
ApeKI	GCWGC	3 cut(s)	308, 317, 379
ApoI	RAATTY	2 cut(s)	34, 531
AspS9I	GGNCC	1 cut(s)	283
AsuC2I	CCSGG	4 cut(s)	76, 77, 110, 394
AsuHPI	GGTGA	1 cut(s)	92
AvaI	CYCGRG	1 cut(s)	75
AxyI	CCTNAGG	1 cut(s)	555
BbsI	GAAGAC	1 cut(s)	512
BbvI	GCAGC	3 cut(s)	320, 329, 391
BccI	CCATC	1 cut(s)	89
BclI	TGATCA	2 cut(s)	229, 469
BcnI	CCSGG	4 cut(s)	76, 77, 110, 394
BcoDI	GTCTC	2 cut(s)	209, 233
BfaI	CTAG	1 cut(s)	327
BisI	GCNGC	4 cut(s)	26, 309, 318, 380
BlsI	GCNGC	4 cut(s)	27, 310, 319, 381
Bme1390I	CCNGG	4 cut(s)	76, 77, 110, 394
BmeT110I	CYCGRG	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	283
BmrFI	CCNGG	4 cut(s)	76, 77, 110, 394
BmsI	GCATC	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	512
BpuMI	CCSGG	4 cut(s)	76, 77, 110, 394
BsaJI	CCNNGG	3 cut(s)	23, 75, 76
BsaWI	WCCGGW	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse1I	ACTGG	2 cut(s)	576, 598
Bse21I	CCTNAGG	1 cut(s)	555
BseDI	CCNNGG	3 cut(s)	23, 75, 76
BseGI	GGATG	2 cut(s)	100, 163
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseMII	CTCAG	2 cut(s)	36, 546
BseNI	ACTGG	2 cut(s)	576, 598
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	3 cut(s)	320, 329, 391
Bsh1236I	CGCG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	284
BsiHKCI	CYCGRG	1 cut(s)	75
BsiSI	CCGG	4 cut(s)	76, 109, 365, 393
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	399
BsmAI	GTCTC	2 cut(s)	209, 233
BsmBI	CGTCTC	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	284
BsoBI	CYCGRG	1 cut(s)	75
Bsp1407I	TGTACA	1 cut(s)	334
Bsp143I	GATC	2 cut(s)	229, 469
BspACI	CCGC	5 cut(s)	23, 25, 161, 191, 311
BspANI	GGCC	1 cut(s)	284
BspCNI	CTCAG	2 cut(s)	37, 547
BspFNI	CGCG	1 cut(s)	25
BspHI	TCATGA	1 cut(s)	30
BsrGI	TGTACA	1 cut(s)	334
BsrI	ACTGG	2 cut(s)	576, 598
BssECI	CCNNGG	3 cut(s)	23, 75, 76
BssMI	GATC	2 cut(s)	229, 469
Bst4CI	ACNGT	2 cut(s)	54, 611
Bst6I	CTCTTC	1 cut(s)	392
BstAUI	TGTACA	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	23
BstDEI	CTNAG	3 cut(s)	45, 555, 588
BstDSI	CCRYGG	1 cut(s)	23
BstEII	GGTNACC	1 cut(s)	541
BstF5I	GGATG	2 cut(s)	100, 163
BstFNI	CGCG	1 cut(s)	25
BstKTI	GATC	2 cut(s)	232, 472
BstMAI	GTCTC	2 cut(s)	209, 233
BstMBI	GATC	2 cut(s)	229, 469
BstMWI	GCNNNNNNNGC	4 cut(s)	190, 314, 317, 458
BstPI	GGTNACC	1 cut(s)	541
BstSCI	CCNGG	4 cut(s)	74, 75, 108, 392
BstUI	CGCG	1 cut(s)	25
BstV1I	GCAGC	3 cut(s)	320, 329, 391
BstV2I	GAAGAC	1 cut(s)	512
Bsu36I	CCTNAGG	1 cut(s)	555
BsuRI	GGCC	1 cut(s)	284
BtgI	CCRYGG	1 cut(s)	23
BtsCI	GGATG	2 cut(s)	100, 163
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	3 cut(s)	99, 583, 616
Cac8I	GCNNGC	1 cut(s)	23
CciI	TCATGA	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	283
Cfr42I	CCGCGG	1 cut(s)	26
Cfr9I	CCCGGG	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	335
CviAII	CATG	1 cut(s)	31
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	3 cut(s)	45, 555, 588
DpnI	GATC	2 cut(s)	231, 471
DpnII	GATC	2 cut(s)	229, 469
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	27
Eco81I	CCTNAGG	1 cut(s)	555
Eco88I	CYCGRG	1 cut(s)	75
Eco91I	GGTNACC	1 cut(s)	541
EcoO65I	GGTNACC	1 cut(s)	541
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	1 cut(s)	34
FaiI	YATR	5 cut(s)	32, 258, 428, 516, 607
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	1 cut(s)	30
FauI	CCCGC	1 cut(s)	30
FbaI	TGATCA	2 cut(s)	229, 469
Fnu4HI	GCNGC	4 cut(s)	26, 309, 318, 380
FokI	GGATG	2 cut(s)	107, 170
Fsp4HI	GCNGC	4 cut(s)	26, 309, 318, 380
FspBI	CTAG	1 cut(s)	327
GluI	GCNGC	4 cut(s)	26, 309, 318, 380
HaeIII	GGCC	1 cut(s)	284
HapII	CCGG	4 cut(s)	76, 109, 365, 393
Hin1II	CATG	1 cut(s)	34
HincII	GTYRAC	1 cut(s)	345
HindII	GTYRAC	1 cut(s)	345
HindIII	AAGCTT	1 cut(s)	198
HinfI	GANTC	3 cut(s)	87, 130, 403
HpaII	CCGG	4 cut(s)	76, 109, 365, 393
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	2 cut(s)	83, 345
Hpy188I	TCNGA	2 cut(s)	46, 135
Hpy188III	TCNNGA	3 cut(s)	31, 127, 227
Hpy8I	GTNNAC	2 cut(s)	83, 345
HpyAV	CCTTC	3 cut(s)	148, 244, 366
HpyCH4III	ACNGT	2 cut(s)	54, 611
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	4 cut(s)	190, 314, 317, 458
HpyF3I	CTNAG	3 cut(s)	45, 555, 588
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	1 cut(s)	34
Ksp22I	TGATCA	2 cut(s)	229, 469
KspI	CCGCGG	1 cut(s)	26
Kzo9I	GATC	2 cut(s)	229, 469
LmnI	GCTCC	1 cut(s)	376
Lsp1109I	GCAGC	3 cut(s)	320, 329, 391
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	1 cut(s)	541
MalI	GATC	2 cut(s)	231, 471
MboI	GATC	2 cut(s)	229, 469
MboII	GAAGA	6 cut(s)	20, 409, 466, 497, 517, 635
MluCI	AATT	3 cut(s)	34, 465, 531
MlyI	GAGTC	1 cut(s)	96
MnlI	CCTC	7 cut(s)	40, 85, 271, 274, 393, 532, 550
MseI	TTAA	1 cut(s)	435
MspA1I	CMGCKG	2 cut(s)	25, 311
MspI	CCGG	4 cut(s)	76, 109, 365, 393
MspR9I	CCNGG	4 cut(s)	76, 77, 110, 394
MvnI	CGCG	1 cut(s)	25
MwoI	GCNNNNNNNGC	4 cut(s)	190, 314, 317, 458
NciI	CCSGG	4 cut(s)	76, 77, 110, 394
NdeII	GATC	2 cut(s)	229, 469
NlaIII	CATG	1 cut(s)	34
PagI	TCATGA	1 cut(s)	30
PfeI	GAWTC	2 cut(s)	130, 403
PkrI	GCNGC	4 cut(s)	27, 310, 319, 381
PleI	GAGTC	1 cut(s)	95
PpsI	GAGTC	1 cut(s)	95
Psp1406I	AACGTT	1 cut(s)	175
PspEI	GGTNACC	1 cut(s)	541
PspPI	GGNCC	1 cut(s)	283
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
SacII	CCGCGG	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	4 cut(s)	26, 309, 318, 380
Sau3AI	GATC	2 cut(s)	229, 469
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	4 cut(s)	76, 77, 110, 394
SetI	ASST	9 cut(s)	178, 202, 270, 358, 427, 463, 493, 543, 556
SfaNI	GCATC	1 cut(s)	148
Sfr303I	CCGCGG	1 cut(s)	26
SgrBI	CCGCGG	1 cut(s)	26
SmaI	CCCGGG	1 cut(s)	77
Sse9I	AATT	3 cut(s)	34, 465, 531
SsiI	CCGC	5 cut(s)	23, 25, 161, 191, 311
SspMI	CTAG	1 cut(s)	327
StyD4I	CCNGG	4 cut(s)	74, 75, 108, 392
TaaI	ACNGT	2 cut(s)	54, 611
TaiI	ACGT	1 cut(s)	178
TaqI	TCGA	2 cut(s)	90, 126
TasI	AATT	3 cut(s)	34, 465, 531
TatI	WGTACW	1 cut(s)	334
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	2 cut(s)	130, 403
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	3 cut(s)	106, 583, 616
TseI	GCWGC	3 cut(s)	308, 317, 379
TspDTI	ATGAA	5 cut(s)	47, 75, 186, 273, 594
TspGWI	ACGGA	2 cut(s)	233, 362
TspMI	CCCGGG	1 cut(s)	75
TspRI	CASTG	3 cut(s)	106, 583, 616
XapI	RAATTY	2 cut(s)	34, 531
XmaI	CCCGGG	1 cut(s)	75
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.