Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005793

Physical Location & Seq

Genomic Coordinates Reverse (-)

26116989 .. 26119450

Gene Structure 2462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g28060.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCCGAGGACGATTTCACACGCCCACCCCGGCTTATGAGCTTCGTCTCCGAGGAACAGTTGGATGAAGCCAAGAGAGCAAGGGGCGAACGAGTTGAGGATGGCACTGCCCAGAGAGACAGACCCCTTTTCGAGATTTTGAAAGAAAACAAAGACAAGAAGGATGCAGAGTTCAATGAGCGTTTCAAGCACAGACCGCCCAAAGCTTTGGACGATGATGAGACCGAATTCCTTGAAAATTTAGAGACTTCAAGGAAGGAATATGAGCAAAAAATTGCAGATGAGGAAGCTCAACAGCTTCTGAGTTTCCAGGCTGCGGTGGCGGCAAAGTCTAGCATTGTGCAAGAGCTTAAGGAAGCACCTTCGGTACCTATAGGCCAGGAACAGAAATCAGCTGAGAAGAAGAATCCACCTCCTCGTCGATTAGGTATGATTATTAAGGTGCAGCCACAAGCAAAGAAAGCCAAAATTGATCAGGGAGGTAGTGAAGAACCTAGAAACACAATGAAAAGCCCACATGTAGATACGGAAAAAACTTTAGAGGTAATTAAGACGCTTAATGGTGGTATAAGCATTGATAAGTCCAGTGTTGCTGCCAAGACAGGTCTTGTTTCCTATAGTGATGACAGTGAAGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nefa_Nip30_N

Protein Analysis

214

Amino Acids

24.01

Weight (kDa)

5.06

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62140
fragaria_vesca	FvH4_1g26260 FvH4_1g26260 FvH4_1g26260 FvH4_1g26260
malus_domestica	MD17G1284800.v1.1
prunus_persica	Prupe.3G003000_v2.0.a1 Prupe.3G003000_v2.0.a1
pyrus_communis	pycom17g28060
rosa_chinensis	RchiOBHm_Chr3g0485921
rosa_laevigata	RLG00000023122
rosa_multiflora	Rmu_sc0004876.1_g000003 Rmu_sc0008757.1_g000021 Rmu_sc0017529.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297600 Rroxscaffold_6G00396200
rosa_rugosa	Rorug01G0265400 Rorug03G0222500 Rorug03G0222600
rosa_samantha	Rh1CG263400 Rh1DG274400 Rh3AG271800 Rh3BG306900 Rh3CG305500 Rh3DG301500
rosa_wichuraiana	Rw0G015520 Rw1G024840 Rw3G024150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	367
AccB1I	GGYRCC	1 cut(s)	367
AciI	CCGC	3 cut(s)	197, 317, 323
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	227, 238
AfaI	GTAC	1 cut(s)	369
AfiI	CCNNNNNNNGG	1 cut(s)	316
AflII	CTTAAG	1 cut(s)	350
AflIII	ACRYGT	1 cut(s)	517
AgsI	TTSAA	5 cut(s)	142, 175, 187, 236, 252
AjnI	CCWGG	2 cut(s)	309, 378
AloI	GAACNNNNNNTCC	2 cut(s)	155, 187
AluBI	AGCT	6 cut(s)	42, 206, 290, 298, 349, 395
AluI	AGCT	6 cut(s)	42, 206, 290, 298, 349, 395
Alw26I	GTCTC	4 cut(s)	52, 111, 215, 239
AlwNI	CAGNNNCTG	1 cut(s)	301
AoxI	GGCC	2 cut(s)	3, 376
ApeKI	GCWGC	3 cut(s)	314, 445, 593
ApoI	RAATTY	2 cut(s)	227, 238
Asp718I	GGTACC	1 cut(s)	367
AsuC2I	CCSGG	1 cut(s)	31
BanI	GGYRCC	1 cut(s)	367
BbvI	GCAGC	3 cut(s)	301, 457, 580
BccI	CCATC	1 cut(s)	95
BciT130I	CCWGG	2 cut(s)	311, 380
BclI	TGATCA	1 cut(s)	472
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	4 cut(s)	52, 111, 215, 239
BfaI	CTAG	2 cut(s)	333, 495
BfmI	CTRYAG	2 cut(s)	372, 616
BfrI	CTTAAG	1 cut(s)	350
BisI	GCNGC	4 cut(s)	315, 324, 446, 594
BlsI	GCNGC	4 cut(s)	316, 325, 447, 595
Bme1390I	CCNGG	3 cut(s)	31, 311, 380
BmiI	GGNNCC	1 cut(s)	369
BmrFI	CCNGG	3 cut(s)	31, 311, 380
BmsI	GCATC	1 cut(s)	154
BpuMI	CCSGG	1 cut(s)	31
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	3 cut(s)	6, 29, 51
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse1I	ACTGG	1 cut(s)	585
BseBI	CCWGG	2 cut(s)	311, 380
BseDI	CCNNGG	3 cut(s)	6, 29, 51
BseGI	GGATG	3 cut(s)	70, 106, 169
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMII	CTCAG	2 cut(s)	293, 387
BseNI	ACTGG	1 cut(s)	585
BseRI	GAGGAG	1 cut(s)	405
BseXI	GCAGC	3 cut(s)	301, 457, 580
BsgI	GTGCAG	1 cut(s)	464
BshFI	GGCC	2 cut(s)	5, 378
BshNI	GGYRCC	1 cut(s)	367
BsiSI	CCGG	1 cut(s)	31
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	4 cut(s)	52, 111, 215, 239
BsmBI	CGTCTC	1 cut(s)	52
BsnI	GGCC	2 cut(s)	5, 378
Bso31I	GGTCTC	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	472
BspACI	CCGC	3 cut(s)	197, 317, 323
BspANI	GGCC	2 cut(s)	5, 378
BspCNI	CTCAG	2 cut(s)	294, 388
BspLI	GGNNCC	1 cut(s)	369
BspT107I	GGYRCC	1 cut(s)	367
BspTI	CTTAAG	1 cut(s)	350
BspTNI	GGTCTC	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	585
BssECI	CCNNGG	3 cut(s)	6, 29, 51
BssMI	GATC	1 cut(s)	472
Bst2UI	CCWGG	2 cut(s)	311, 380
Bst4CI	ACNGT	2 cut(s)	60, 629
BstAFI	CTTAAG	1 cut(s)	350
BstDEI	CTNAG	2 cut(s)	302, 396
BstF5I	GGATG	3 cut(s)	70, 106, 169
BstKTI	GATC	1 cut(s)	475
BstMAI	GTCTC	4 cut(s)	52, 111, 215, 239
BstMBI	GATC	1 cut(s)	472
BstMWI	GCNNNNNNNGC	6 cut(s)	77, 187, 196, 320, 323, 461
BstNI	CCWGG	2 cut(s)	311, 380
BstNSI	RCATGY	1 cut(s)	521
BstSCI	CCNGG	3 cut(s)	29, 309, 378
BstSFI	CTRYAG	2 cut(s)	372, 616
BstV1I	GCAGC	3 cut(s)	301, 457, 580
BstXI	CCANNNNNNTGG	1 cut(s)	208
BsuRI	GGCC	2 cut(s)	5, 378
BtsCI	GGATG	3 cut(s)	70, 106, 169
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	3 cut(s)	105, 592, 634
CaiI	CAGNNNCTG	1 cut(s)	301
CseI	GACGC	1 cut(s)	562
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	1 cut(s)	518
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	2 cut(s)	302, 396
DpnI	GATC	1 cut(s)	474
DpnII	GATC	1 cut(s)	472
EaeI	YGGCCR	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	227
EcoRII	CCWGG	2 cut(s)	309, 378
Esp3I	CGTCTC	1 cut(s)	52
FaeI	CATG	1 cut(s)	521
FaiI	YATR	7 cut(s)	38, 264, 374, 431, 519, 569, 618
FatI	CATG	1 cut(s)	517
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	4 cut(s)	315, 324, 446, 594
FokI	GGATG	3 cut(s)	77, 113, 176
Fsp4HI	GCNGC	4 cut(s)	315, 324, 446, 594
FspBI	CTAG	2 cut(s)	333, 495
GluI	GCNGC	4 cut(s)	315, 324, 446, 594
HaeIII	GGCC	2 cut(s)	5, 378
HapII	CCGG	1 cut(s)	31
HgaI	GACGC	1 cut(s)	562
Hin1II	CATG	1 cut(s)	521
HindIII	AAGCTT	1 cut(s)	204
HinfI	GANTC	1 cut(s)	406
HpaII	CCGG	1 cut(s)	31
Hpy188I	TCNGA	2 cut(s)	52, 303
Hpy188III	TCNNGA	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	423
HpyAV	CCTTC	3 cut(s)	154, 250, 372
HpyCH4III	ACNGT	2 cut(s)	60, 629
HpyCH4V	TGCA	4 cut(s)	167, 278, 343, 445
HpyF10VI	GCNNNNNNNGC	6 cut(s)	77, 187, 196, 320, 323, 461
HpyF3I	CTNAG	2 cut(s)	302, 396
Hsp92II	CATG	1 cut(s)	521
KpnI	GGTACC	1 cut(s)	371
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	1 cut(s)	472
LpnPI	CCDG	9 cut(s)	44, 125, 296, 323, 365, 392, 461, 588, 598
Lsp1109I	GCAGC	3 cut(s)	301, 457, 580
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	2 cut(s)	333, 495
MalI	GATC	1 cut(s)	474
MboI	GATC	1 cut(s)	472
MboII	GAAGA	3 cut(s)	412, 415, 500
MluCI	AATT	5 cut(s)	227, 238, 273, 468, 546
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	7 cut(s)	46, 91, 277, 423, 426, 473, 535
MseI	TTAA	4 cut(s)	351, 438, 549, 558
MspA1I	CMGCKG	1 cut(s)	395
MspCI	CTTAAG	1 cut(s)	350
MspI	CCGG	1 cut(s)	31
MspR9I	CCNGG	3 cut(s)	31, 311, 380
MvaI	CCWGG	2 cut(s)	311, 380
MwoI	GCNNNNNNNGC	6 cut(s)	77, 187, 196, 320, 323, 461
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	1 cut(s)	472
NlaIII	CATG	1 cut(s)	521
NlaIV	GGNNCC	1 cut(s)	369
NmeAIII	GCCGAG	1 cut(s)	31
NspI	RCATGY	1 cut(s)	521
PciI	ACATGT	1 cut(s)	517
PfeI	GAWTC	1 cut(s)	406
PkrI	GCNGC	4 cut(s)	316, 325, 447, 595
PscI	ACATGT	1 cut(s)	517
Psp6I	CCWGG	2 cut(s)	309, 378
PspGI	CCWGG	2 cut(s)	309, 378
PspN4I	GGNNCC	1 cut(s)	369
PstNI	CAGNNNCTG	1 cut(s)	301
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
SaqAI	TTAA	4 cut(s)	351, 438, 549, 558
SatI	GCNGC	4 cut(s)	315, 324, 446, 594
Sau3AI	GATC	1 cut(s)	472
ScrFI	CCNGG	3 cut(s)	31, 311, 380
SfaNI	GCATC	1 cut(s)	154
SfcI	CTRYAG	2 cut(s)	372, 616
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	5 cut(s)	227, 238, 273, 468, 546
SsiI	CCGC	3 cut(s)	197, 317, 323
SspMI	CTAG	2 cut(s)	333, 495
StyD4I	CCNGG	3 cut(s)	29, 309, 378
TaaI	ACNGT	2 cut(s)	60, 629
TaqI	TCGA	2 cut(s)	132, 421
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	5 cut(s)	227, 238, 273, 468, 546
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	1 cut(s)	406
Tru1I	TTAA	4 cut(s)	351, 438, 549, 558
Tru9I	TTAA	4 cut(s)	351, 438, 549, 558
TscAI	CASTG	3 cut(s)	112, 592, 634
TseI	GCWGC	3 cut(s)	314, 445, 593
TspDTI	ATGAA	2 cut(s)	81, 521
TspGWI	ACGGA	1 cut(s)	542
TspRI	CASTG	3 cut(s)	112, 592, 634
Vha464I	CTTAAG	1 cut(s)	350
XapI	RAATTY	2 cut(s)	227, 238
XceI	RCATGY	1 cut(s)	521
XspI	CTAG	2 cut(s)	333, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.