Rh1CG263400

N-terminal domain of NEFA-interacting nuclear protein NIP30

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0005793
Physical Location & Seq
Reverse (-)
52791106 .. 52792113
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG263400.1

Sequence Viewer

Length: 312 bp
ATGCATGAGCTTAAGGAAGCACATAGTTGTCTTCCTCTAGGAGTCCATGGACAGTTATCTGCAGCTGAAAAGAAGAAGGATCCTACTCCTGGTTTATTGGGTATGATTATCAAAGTGAAGGAGCCACAAGCAAAGAAACCTAAAATTGAAGACGCTAACAACACAGTGAAAACTCCTCATGTTGATAGTAAAGATCATAGTTTAGAGGTAGTGAAGACTCCCAATGATGATAATACTGATCATTTCAGTGTTGTTGCTAAGACTGCTCTTGTTTCATATAGTGATACTGATGATGATAGTGAAGATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nefa_Nip30_N

Protein Analysis

103

Amino Acids

11.24

Weight (kDa)

5.24

Isoelectric Point (pI)

27.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 74, 87
AfiI CCNNNNNNNGG 1 cut(s) 89
AflII CTTAAG 1 cut(s) 11
AgsI TTSAA 1 cut(s) 149
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 2 cut(s) 10, 65
AluI AGCT 2 cut(s) 10, 65
AlwI GGATC 2 cut(s) 74, 87
ApeKI GCWGC 1 cut(s) 62
BamHI GGATCC 1 cut(s) 79
BbsI GAAGAC 3 cut(s) 23, 156, 221
BbvI GCAGC 1 cut(s) 74
BciT130I CCWGG 1 cut(s) 90
BclI TGATCA 1 cut(s) 238
BfaI CTAG 2 cut(s) 38, 310
BfmI CTRYAG 1 cut(s) 60
BfrI CTTAAG 1 cut(s) 11
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 90
BmiI GGNNCC 2 cut(s) 81, 123
BmrFI CCNGG 1 cut(s) 90
BpiI GAAGAC 3 cut(s) 23, 156, 221
BsaJI CCNNGG 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 89
BseBI CCWGG 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 46
BseLI CCNNNNNNNGG 1 cut(s) 89
BseRI GAGGAG 1 cut(s) 165
BseXI GCAGC 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 89
Bsp143I GATC 3 cut(s) 79, 193, 238
Bsp19I CCATGG 1 cut(s) 46
BspLI GGNNCC 2 cut(s) 81, 123
BspMAI CTGCAG 1 cut(s) 64
BspPI GGATC 2 cut(s) 74, 87
BspTI CTTAAG 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 3 cut(s) 79, 193, 238
BssT1I CCWWGG 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 54, 166
BstAFI CTTAAG 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 258
BstDSI CCRYGG 1 cut(s) 46
BstKTI GATC 3 cut(s) 82, 196, 241
BstMBI GATC 3 cut(s) 79, 193, 238
BstMWI GCNNNNNNNGC 1 cut(s) 263
BstNI CCWGG 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 88
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 74
BstV2I GAAGAC 3 cut(s) 23, 156, 221
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BtgI CCRYGG 1 cut(s) 46
BtsIMutI CAGTG 2 cut(s) 171, 253
CseI GACGC 1 cut(s) 161
CviAII CATG 3 cut(s) 5, 47, 179
CviJI RGCY 3 cut(s) 10, 65, 124
CviKI_1 RGCY 3 cut(s) 10, 65, 124
DdeI CTNAG 1 cut(s) 258
DpnI GATC 3 cut(s) 81, 195, 240
DpnII GATC 3 cut(s) 79, 193, 238
Eco130I CCWWGG 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 46
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 3 cut(s) 8, 50, 182
FaiI YATR 8 cut(s) 6, 24, 48, 104, 180, 198, 277, 279
FatI CATG 3 cut(s) 4, 46, 178
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 2 cut(s) 38, 310
GluI GCNGC 1 cut(s) 63
HgaI GACGC 1 cut(s) 161
Hin1II CATG 3 cut(s) 8, 50, 182
HinfI GANTC 2 cut(s) 42, 217
HpyAV CCTTC 2 cut(s) 70, 112
HpyCH4III ACNGT 2 cut(s) 54, 166
HpyCH4V TGCA 2 cut(s) 4, 62
HpyF10VI GCNNNNNNNGC 1 cut(s) 263
HpyF3I CTNAG 1 cut(s) 258
Hsp92II CATG 3 cut(s) 8, 50, 182
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 3 cut(s) 79, 193, 238
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 2 cut(s) 75, 102
Lsp1109I GCAGC 1 cut(s) 74
MaeI CTAG 2 cut(s) 38, 310
MalI GATC 3 cut(s) 81, 195, 240
MboI GATC 3 cut(s) 79, 193, 238
MboII GAAGA 4 cut(s) 23, 85, 161, 226
MflI RGATCY 1 cut(s) 79
MluCI AATT 1 cut(s) 144
MlyI GAGTC 2 cut(s) 51, 211
MnlI CCTC 3 cut(s) 45, 186, 199
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 12
MslI CAYNNNNRTG 1 cut(s) 246
MspA1I CMGCKG 1 cut(s) 65
MspCI CTTAAG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 90
MvaI CCWGG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 263
NcoI CCATGG 1 cut(s) 46
NdeII GATC 3 cut(s) 79, 193, 238
NlaIII CATG 3 cut(s) 8, 50, 182
NlaIV GGNNCC 2 cut(s) 81, 123
NsiI ATGCAT 1 cut(s) 6
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 2 cut(s) 50, 211
PpsI GAGTC 2 cut(s) 50, 211
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
PspN4I GGNNCC 2 cut(s) 81, 123
PstI CTGCAG 1 cut(s) 64
PsuI RGATCY 1 cut(s) 79
PvuII CAGCTG 1 cut(s) 65
RseI CAYNNNNRTG 1 cut(s) 246
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 3 cut(s) 79, 193, 238
SchI GAGTC 2 cut(s) 51, 211
ScrFI CCNGG 1 cut(s) 90
SetI ASST 4 cut(s) 12, 67, 142, 210
SfcI CTRYAG 1 cut(s) 60
SgeI CNNG 8 cut(s) 17, 50, 59, 101, 102, 140, 191, 281
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 1 cut(s) 144
SspMI CTAG 2 cut(s) 38, 310
StyD4I CCNGG 1 cut(s) 88
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 2 cut(s) 54, 166
TasI AATT 1 cut(s) 144
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 2 cut(s) 171, 253
TseI GCWGC 1 cut(s) 62
TspDTI ATGAA 1 cut(s) 264
TspRI CASTG 2 cut(s) 171, 253
Vha464I CTTAAG 1 cut(s) 11
XspI CTAG 2 cut(s) 38, 310
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.