Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008757.1

Orthogroup ID

OG0005793

Physical Location & Seq

Genomic Coordinates Forward (+)

89178 .. 91383

Gene Structure 2206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008757.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgacacgagaagtgaatggacaacacaagatagagcgacatgagtatttccagatgcctctgcactatccaagggatagaccactttacgaggttctgaaagaaaacaaggagaggaaggatgcagagttcaacgaacgtttcaagcacagaccacctaaagctttggacgatgaggagactgactttcttgatagaatgcagaaggcaagaaaggaatacgaacggcgactagaggatgaggaagcacaacagcttctgagtttcaagctaggaagccctcgcagccaaggccagcgtcatttatctgcagctgaaaggaagaagaatcctactcctggtttattgggtatgattatcaaagtgaaggagccacaagcaaagaaacctaaaattgaagacgctaacaacacagtgaaaactcctcatgttgatagtaaagatcatagtttagaggtagtgaagactcccaatgatgataatactgatcatttcagtgttgttgctaagactgctcttgtttcatatagtgatactgatgatgatagtgaagatgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nefa_Nip30_N

Protein Analysis

186

Amino Acids

21.77

Weight (kDa)

5.94

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005793)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62140
fragaria_vesca	FvH4_1g26260 FvH4_1g26260 FvH4_1g26260 FvH4_1g26260
malus_domestica	MD17G1284800.v1.1
prunus_persica	Prupe.3G003000_v2.0.a1 Prupe.3G003000_v2.0.a1
pyrus_communis	pycom17g28060
rosa_chinensis	RchiOBHm_Chr3g0485921
rosa_laevigata	RLG00000023122
rosa_multiflora	Rmu_sc0004876.1_g000003 Rmu_sc0008757.1_g000021 Rmu_sc0017529.1_g000001
rosa_roxburghii	Rroxscaffold_4G00297600 Rroxscaffold_6G00396200
rosa_rugosa	Rorug01G0265400 Rorug03G0222500 Rorug03G0222600
rosa_samantha	Rh1CG263400 Rh1DG274400 Rh3AG271800 Rh3BG306900 Rh3CG305500 Rh3DG301500
rosa_wichuraiana	Rw0G015520 Rw1G024840 Rw3G024150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	139
AfiI	CCNNNNNNNGG	1 cut(s)	338
AgsI	TTSAA	4 cut(s)	133, 145, 268, 398
AjnI	CCWGG	1 cut(s)	337
AloI	GAACNNNNNNTCC	2 cut(s)	113, 145
AluBI	AGCT	4 cut(s)	164, 256, 271, 314
AluI	AGCT	4 cut(s)	164, 256, 271, 314
Alw26I	GTCTC	1 cut(s)	173
AlwNI	CAGNNNCTG	1 cut(s)	259
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	2 cut(s)	285, 311
BauI	CACGAG	1 cut(s)	6
BbsI	GAAGAC	2 cut(s)	405, 470
BbvI	GCAGC	2 cut(s)	297, 323
BceAI	ACGGC	1 cut(s)	242
BciT130I	CCWGG	1 cut(s)	339
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	1 cut(s)	173
BfaI	CTAG	3 cut(s)	233, 272, 559
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	2 cut(s)	286, 312
BlsI	GCNGC	2 cut(s)	287, 313
Bme1390I	CCNGG	1 cut(s)	339
BmiI	GGNNCC	1 cut(s)	372
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	2 cut(s)	45, 112
BpiI	GAAGAC	2 cut(s)	405, 470
BsaJI	CCNNGG	2 cut(s)	71, 289
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	2 cut(s)	71, 289
BseGI	GGATG	2 cut(s)	127, 244
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseMII	CTCAG	1 cut(s)	251
BseRI	GAGGAG	2 cut(s)	191, 414
BseXI	GCAGC	2 cut(s)	297, 323
BsgI	GTGCAG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	338
BsmAI	GTCTC	1 cut(s)	173
BsmI	GAATGC	1 cut(s)	204
BsnI	GGCC	1 cut(s)	294
Bsp143I	GATC	2 cut(s)	442, 487
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	1 cut(s)	252
BspLI	GGNNCC	1 cut(s)	372
BspMAI	CTGCAG	1 cut(s)	313
BssECI	CCNNGG	2 cut(s)	71, 289
BssMI	GATC	2 cut(s)	442, 487
BssSI	CACGAG	1 cut(s)	6
BssT1I	CCWWGG	2 cut(s)	71, 289
Bst2BI	CACGAG	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	415
BstC8I	GCNNGC	1 cut(s)	296
BstDEI	CTNAG	2 cut(s)	260, 507
BstF5I	GGATG	2 cut(s)	127, 244
BstKTI	GATC	2 cut(s)	445, 490
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	2 cut(s)	442, 487
BstMWI	GCNNNNNNNGC	3 cut(s)	285, 291, 512
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	2 cut(s)	297, 323
BstV2I	GAAGAC	2 cut(s)	405, 470
BsuRI	GGCC	1 cut(s)	294
BtsCI	GGATG	2 cut(s)	127, 244
BtsIMutI	CAGTG	2 cut(s)	420, 502
Cac8I	GCNNGC	1 cut(s)	296
CaiI	CAGNNNCTG	1 cut(s)	259
CseI	GACGC	2 cut(s)	287, 410
CviAII	CATG	2 cut(s)	41, 428
CviJI	RGCY	8 cut(s)	164, 256, 271, 279, 288, 294, 314, 373
CviKI_1	RGCY	8 cut(s)	164, 256, 271, 279, 288, 294, 314, 373
DdeI	CTNAG	2 cut(s)	260, 507
DpnI	GATC	2 cut(s)	444, 489
DpnII	GATC	2 cut(s)	442, 487
Eco130I	CCWWGG	2 cut(s)	71, 289
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	2 cut(s)	71, 289
ErhI	CCWWGG	2 cut(s)	71, 289
FaeI	CATG	2 cut(s)	44, 431
FaiI	YATR	6 cut(s)	42, 353, 429, 447, 526, 528
FatI	CATG	2 cut(s)	40, 427
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	2 cut(s)	286, 312
FokI	GGATG	2 cut(s)	134, 251
Fsp4HI	GCNGC	2 cut(s)	286, 312
FspBI	CTAG	3 cut(s)	233, 272, 559
GluI	GCNGC	2 cut(s)	286, 312
HaeIII	GGCC	1 cut(s)	294
HgaI	GACGC	2 cut(s)	287, 410
Hin1II	CATG	2 cut(s)	44, 431
HindIII	AAGCTT	1 cut(s)	162
HinfI	GANTC	2 cut(s)	328, 466
Hpy188I	TCNGA	2 cut(s)	99, 261
Hpy188III	TCNNGA	2 cut(s)	52, 191
HpyAV	CCTTC	3 cut(s)	112, 199, 361
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	4 cut(s)	64, 125, 202, 311
HpyF10VI	GCNNNNNNNGC	3 cut(s)	285, 291, 512
HpyF3I	CTNAG	2 cut(s)	260, 507
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	2 cut(s)	44, 431
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	2 cut(s)	442, 487
LmnI	GCTCC	1 cut(s)	370
LpnPI	CCDG	4 cut(s)	65, 308, 324, 351
Lsp1109I	GCAGC	2 cut(s)	297, 323
LweI	GCATC	2 cut(s)	45, 112
MaeI	CTAG	3 cut(s)	233, 272, 559
MaeII	ACGT	1 cut(s)	139
MalI	GATC	2 cut(s)	444, 489
MboI	GATC	2 cut(s)	442, 487
MboII	GAAGA	4 cut(s)	334, 337, 410, 475
MluCI	AATT	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	460
MnlI	CCTC	9 cut(s)	69, 85, 108, 169, 229, 235, 291, 435, 448
MslI	CAYNNNNRTG	1 cut(s)	495
MspA1I	CMGCKG	1 cut(s)	314
MspR9I	CCNGG	1 cut(s)	339
Mva1269I	GAATGC	1 cut(s)	204
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	3 cut(s)	285, 291, 512
NdeII	GATC	2 cut(s)	442, 487
NlaIII	CATG	2 cut(s)	44, 431
NlaIV	GGNNCC	1 cut(s)	372
PctI	GAATGC	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	287, 313
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
Psp1406I	AACGTT	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	372
PstI	CTGCAG	1 cut(s)	313
PstNI	CAGNNNCTG	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	314
RseI	CAYNNNNRTG	1 cut(s)	495
SatI	GCNGC	2 cut(s)	286, 312
Sau3AI	GATC	2 cut(s)	442, 487
SchI	GAGTC	1 cut(s)	460
ScrFI	CCNGG	1 cut(s)	339
SetI	ASST	9 cut(s)	96, 142, 160, 166, 258, 273, 316, 391, 459
SfaNI	GCATC	2 cut(s)	45, 112
SfcI	CTRYAG	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	495
Sse9I	AATT	1 cut(s)	393
SspMI	CTAG	3 cut(s)	233, 272, 559
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	2 cut(s)	71, 289
TaaI	ACNGT	1 cut(s)	415
TaiI	ACGT	1 cut(s)	142
TasI	AATT	1 cut(s)	393
TfiI	GAWTC	1 cut(s)	328
TscAI	CASTG	2 cut(s)	420, 502
TseI	GCWGC	2 cut(s)	285, 311
TspDTI	ATGAA	1 cut(s)	513
TspRI	CASTG	2 cut(s)	420, 502
XspI	CTAG	3 cut(s)	233, 272, 559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.