Rorug03G0222600

N-terminal domain of NEFA-interacting nuclear protein NIP30

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0005793
Physical Location & Seq
Forward (+)
20261590 .. 20262668
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0222600.1

Sequence Viewer

Length: 369 bp
ATGGTGCTTTCCTCGATGCCGTTCGTGCCGCTTCGCTTGATAGTGATCTTCGCCATCTGGAGTTTACTATGGCAATTGCCTTTGAATGAGTTAGATAAGTGTTTCCCTCGGGTGCATTTGTCTGTTGTTGATGAAATGAAATCGTCCAATAAAGGCATGTTAATCGTGGAAAATGAGGCTTGGTCGCCATTTGTTTTCAGCTTTGAAAGTACTAGTAGCGAGAGGGAAGCTGCTAATAACCCTGGGGGATTAGTTGACTCCTCTGGTTTCCAACGTTTGATACAAGACCTTGCTGATGCAACTGCTGAACCAAACTTCCAAGCCTCAGAAACAAAGGTTAGTTCAATTGCACTGGGCTTGATCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nefa_Nip30_N

Protein Analysis

122

Amino Acids

13.52

Weight (kDa)

4.58

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 29
AclI AACGTT 1 cut(s) 274
AfaI GTAC 1 cut(s) 211
AgsI TTSAA 3 cut(s) 85, 206, 345
AhlI ACTAGT 1 cut(s) 212
AjnI CCWGG 1 cut(s) 241
AloI GAACNNNNNNTCC 2 cut(s) 300, 332
AluBI AGCT 2 cut(s) 201, 230
AluI AGCT 2 cut(s) 201, 230
Ama87I CYCGRG 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 230
AvaI CYCGRG 1 cut(s) 108
BbvI GCAGC 1 cut(s) 217
BccI CCATC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 4
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BciT130I CCWGG 1 cut(s) 243
BcuI ACTAGT 1 cut(s) 212
BfaI CTAG 1 cut(s) 213
BisI GCNGC 2 cut(s) 29, 231
BlsI GCNGC 2 cut(s) 30, 232
BmcAI AGTACT 1 cut(s) 211
Bme1390I CCNGG 1 cut(s) 243
BmeT110I CYCGRG 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 243
BmrI ACTGGG 1 cut(s) 362
BmsI GCATC 2 cut(s) 6, 286
BmuI ACTGGG 1 cut(s) 362
BpmI CTGGAG 1 cut(s) 79
BsaBI GATNNNNATC 1 cut(s) 44
BsaJI CCNNGG 3 cut(s) 107, 241, 242
Bse1I ACTGG 1 cut(s) 357
Bse8I GATNNNNATC 1 cut(s) 44
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 3 cut(s) 107, 241, 242
BseJI GATNNNNATC 1 cut(s) 44
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 357
BseRI GAGGAG 1 cut(s) 250
BseXI GCAGC 1 cut(s) 217
BsiHKCI CYCGRG 1 cut(s) 108
BsoBI CYCGRG 1 cut(s) 108
Bsp143I GATC 2 cut(s) 45, 360
BspACI CCGC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 338
BsrI ACTGG 1 cut(s) 357
BssECI CCNNGG 3 cut(s) 107, 241, 242
BssMI GATC 2 cut(s) 45, 360
Bst2UI CCWGG 1 cut(s) 243
BstDEI CTNAG 1 cut(s) 325
BstKTI GATC 2 cut(s) 48, 363
BstMBI GATC 2 cut(s) 45, 360
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNI CCWGG 1 cut(s) 243
BstNSI RCATGY 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 241
BstV1I GCAGC 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 350
Csp6I GTAC 1 cut(s) 210
CviAII CATG 1 cut(s) 157
CviJI RGCY 5 cut(s) 179, 201, 230, 323, 357
CviKI_1 RGCY 5 cut(s) 179, 201, 230, 323, 357
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 1 cut(s) 325
DpnI GATC 2 cut(s) 47, 362
DpnII GATC 2 cut(s) 45, 360
Eco88I CYCGRG 1 cut(s) 108
EcoRII CCWGG 1 cut(s) 241
FaeI CATG 1 cut(s) 160
FaiI YATR 2 cut(s) 70, 158
FatI CATG 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 29, 231
Fsp4HI GCNGC 2 cut(s) 29, 231
FspBI CTAG 1 cut(s) 213
GluI GCNGC 2 cut(s) 29, 231
GsuI CTGGAG 1 cut(s) 79
Hin1II CATG 1 cut(s) 160
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 1 cut(s) 257
Hpy166II GTNNAC 2 cut(s) 65, 256
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 1 cut(s) 58
Hpy8I GTNNAC 2 cut(s) 65, 256
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 3 cut(s) 115, 299, 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpyF3I CTNAG 1 cut(s) 325
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 1 cut(s) 160
Kzo9I GATC 2 cut(s) 45, 360
LpnPI CCDG 5 cut(s) 43, 228, 249, 255, 338
Lsp1109I GCAGC 1 cut(s) 217
LweI GCATC 2 cut(s) 6, 286
MaeI CTAG 1 cut(s) 213
MaeII ACGT 1 cut(s) 274
MalI GATC 2 cut(s) 47, 362
MboI GATC 2 cut(s) 45, 360
MboII GAAGA 1 cut(s) 40
MfeI CAATTG 2 cut(s) 74, 345
MluCI AATT 2 cut(s) 74, 345
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 295
MnlI CCTC 6 cut(s) 22, 117, 169, 216, 271, 334
MseI TTAA 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 243
MunI CAATTG 2 cut(s) 74, 345
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 1 cut(s) 25
NdeII GATC 2 cut(s) 45, 360
NlaIII CATG 1 cut(s) 160
NspI RCATGY 1 cut(s) 160
PasI CCCWGGG 1 cut(s) 242
PkrI GCNGC 2 cut(s) 30, 232
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
Psp1406I AACGTT 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 2 cut(s) 29, 231
Sau3AI GATC 2 cut(s) 45, 360
ScaI AGTACT 1 cut(s) 211
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 243
SetI ASST 5 cut(s) 203, 232, 277, 291, 339
SfaNI GCATC 2 cut(s) 6, 286
SpeI ACTAGT 1 cut(s) 212
Sse9I AATT 2 cut(s) 74, 345
SsiI CCGC 1 cut(s) 29
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 1 cut(s) 241
TaiI ACGT 1 cut(s) 277
TaqI TCGA 1 cut(s) 14
TasI AATT 2 cut(s) 74, 345
TatI WGTACW 1 cut(s) 209
TauI GCSGC 1 cut(s) 31
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TscAI CASTG 1 cut(s) 357
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 2 cut(s) 147, 152
TspRI CASTG 1 cut(s) 357
XceI RCATGY 1 cut(s) 160
XspI CTAG 1 cut(s) 213
ZrmI AGTACT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.