Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002743

Physical Location & Seq

Genomic Coordinates Forward (+)

682017 .. 684158

Gene Structure 2142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G010800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGAAGGCTTTGGCTGTTGTTCGTCCCCCAAGCATTTCCTCATGGCCTCCGCAGTCCTTACCCAAATCTCAGTATCTCCGAAGCCAAAGCTTTCGGGTCTCGTCCTCTTTGATAAAAGAGCCTCAGTCCGAAATACAGGCGAAGCAAGAGAAGAAGGGTGGAGGAGTGATGGATGAAGTGTTTCTGAATTTGTTTAGGAAGAAAATGGTGGAGGAAGTTGGATGGGATTCCCGAAAACCCGGATATGATGGACTCATTGAAGTTGCAAACCGGCTTATGCTCATAAGTCCAACCAATTCTCACACTAAAGAAGCTGCGGTGAGAATACTGAGATCCCTGTTTCCACCAATGCTGCTACAACTTTATAAATTGCTAATAGCACCCATACAAGGCGGAAAAGTAGCTGCCATCATGGTTGCAAGGGTGACTGCAATTACTTGTGAATGGCTTATGGGACCCTGCACTGTTAATTCTGTCGACCTACCCGACGGCACCTCGTGGAATAGTGGGGTGTTTGTAGAGAAATGTAAGTACTTGGAGCAAAGCAAATGCGTCGGAATATGTCTGAATACTTGTAAGCTTCCTACTCAGGCTTTCATGAAAGATTACATGGGTGTTCCTTTAGTGATGGAGCCAAACTTCAGCGACTATAGCTGCCAGTTTAAATTCGGGGTTCTCCCTCCGCTTCCTGAAGATGATGCCACTCTCAAGGAGCCGTGCTTGGACATCTGCCCTAACGCCACACGACGCAGAGAATTCGCCGGAAACATTAATGTACAGCAATGCCCCAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4033

Protein Analysis

266

Amino Acids

29.49

Weight (kDa)

8.87

Isoelectric Point (pI)

59.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01995 AT4G01995 AT4G01995
fragaria_vesca	FvH4_1g27090 FvH4_1g27090 FvH4_1g27090 FvH4_1g27090 FvH4_1g27090 FvH4_1g27090 FvH4_1g27090 FvH4_1g27090 FvH4_1g27090 FvH4_1g27090 FvH4_1g27090 FvH4_1g27090 FvH4_1g27090 FvH4_1g27090 FvH4_1g27090 FvH4_1g27090 FvH4_1g27090 FvH4_1g27090 FvH4_1g27090
malus_domestica	MD09G1283900.v1.1
prunus_persica	Prupe.3G010800_v2.0.a1
pyrus_communis	pycom09g19180 pycom17g27480
rosa_chinensis	RchiOBHm_Chr3g0487411
rosa_laevigata	RLG00000023005 RLG00000023006
rosa_multiflora	Rmu_sc0001955.1_g000001 Rmu_sc0038749.1_g000002
rosa_roxburghii	Rroxscaffold_6G00394800
rosa_rugosa	Rorug03G0233800 Rorug03G0233900
rosa_samantha	Rh3AG281900 Rh3BG317500 Rh3CG315600 Rh3DG313500
rosa_wichuraiana	Rw3G024960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	366
AccB1I	GGYRCC	1 cut(s)	491
AccI	GTMKAC	1 cut(s)	477
AciI	CCGC	4 cut(s)	50, 317, 393, 683
AclWI	GGATC	1 cut(s)	327
AcsI	RAATTY	3 cut(s)	187, 665, 755
AcuI	CTGAAG	2 cut(s)	625, 711
AdeI	CACNNNGTG	1 cut(s)	498
AfaI	GTAC	2 cut(s)	533, 777
AfiI	CCNNNNNNNGG	1 cut(s)	389
AgsI	TTSAA	1 cut(s)	260
AluBI	AGCT	5 cut(s)	90, 314, 404, 580, 654
AluI	AGCT	5 cut(s)	90, 314, 404, 580, 654
Alw26I	GTCTC	1 cut(s)	103
AlwI	GGATC	1 cut(s)	327
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	4 cut(s)	314, 352, 404, 654
ApoI	RAATTY	3 cut(s)	187, 665, 755
AseI	ATTAAT	1 cut(s)	771
Asp700I	GAANNNNTTC	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	455
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	2 cut(s)	331, 436
AvaII	GGWCC	1 cut(s)	455
BanI	GGYRCC	1 cut(s)	491
BauI	CACGAG	1 cut(s)	496
BbvI	GCAGC	4 cut(s)	301, 339, 391, 641
BccI	CCATC	5 cut(s)	163, 216, 242, 416, 622
BceAI	ACGGC	2 cut(s)	505, 700
BcgI	CGANNNNNNTGC	4 cut(s)	535, 569, 739, 773
BcnI	CCSGG	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	103
BfmI	CTRYAG	1 cut(s)	649
BisI	GCNGC	4 cut(s)	315, 353, 405, 655
BlsI	GCNGC	4 cut(s)	316, 354, 406, 656
BmcAI	AGTACT	1 cut(s)	533
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	455
BmgT120I	GGNCC	1 cut(s)	455
BmiI	GGNNCC	5 cut(s)	456, 457, 493, 633, 714
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	1 cut(s)	688
BpuEI	CTTGAG	1 cut(s)	692
BpuMI	CCSGG	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	103
BsaJI	CCNNGG	1 cut(s)	789
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse118I	RCCGGY	1 cut(s)	270
Bse1I	ACTGG	1 cut(s)	658
Bse3DI	GCAATG	1 cut(s)	788
BseDI	CCNNGG	1 cut(s)	789
BseGI	GGATG	2 cut(s)	178, 227
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMI	GCAATG	1 cut(s)	788
BseMII	CTCAG	4 cut(s)	83, 137, 320, 602
BseNI	ACTGG	1 cut(s)	658
BseRI	GAGGAG	1 cut(s)	177
BseXI	GCAGC	4 cut(s)	301, 339, 391, 641
BsgI	GTGCAG	1 cut(s)	445
BshFI	GGCC	1 cut(s)	46
BshNI	GGYRCC	1 cut(s)	491
BsiSI	CCGG	3 cut(s)	240, 271, 762
BslFI	GGGAC	2 cut(s)	9, 468
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	1 cut(s)	103
BsmFI	GGGAC	2 cut(s)	9, 468
BsnI	GGCC	1 cut(s)	46
Bso31I	GGTCTC	1 cut(s)	103
Bsp1407I	TGTACA	1 cut(s)	775
Bsp143I	GATC	1 cut(s)	332
BspACI	CCGC	4 cut(s)	50, 317, 393, 683
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	4 cut(s)	82, 136, 321, 601
BspHI	TCATGA	1 cut(s)	597
BspLI	GGNNCC	5 cut(s)	456, 457, 493, 633, 714
BspPI	GGATC	1 cut(s)	327
BspT107I	GGYRCC	1 cut(s)	491
BspTNI	GGTCTC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	788
BsrFI	RCCGGY	1 cut(s)	270
BsrGI	TGTACA	1 cut(s)	775
BsrI	ACTGG	1 cut(s)	658
BssAI	RCCGGY	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	789
BssMI	GATC	1 cut(s)	332
BssSI	CACGAG	1 cut(s)	496
BssT1I	CCWWGG	1 cut(s)	789
Bst2BI	CACGAG	1 cut(s)	496
Bst4CI	ACNGT	1 cut(s)	466
BstAUI	TGTACA	1 cut(s)	775
BstDEI	CTNAG	4 cut(s)	69, 123, 329, 588
BstF5I	GGATG	2 cut(s)	178, 227
BstKTI	GATC	1 cut(s)	335
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	332
BstMWI	GCNNNNNNNGC	1 cut(s)	651
BstSCI	CCNGG	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	649
BstV1I	GCAGC	4 cut(s)	301, 339, 391, 641
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
BsuRI	GGCC	1 cut(s)	46
BtsCI	GGATG	2 cut(s)	178, 227
BtsIMutI	CAGTG	1 cut(s)	462
CciI	TCATGA	1 cut(s)	597
Cfr10I	RCCGGY	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	455
CseI	GACGC	2 cut(s)	541, 756
Csp6I	GTAC	2 cut(s)	532, 776
CviAII	CATG	5 cut(s)	42, 412, 598, 610, 795
CviQI	GTAC	2 cut(s)	532, 776
DdeI	CTNAG	4 cut(s)	69, 123, 329, 588
DpnI	GATC	1 cut(s)	334
DpnII	GATC	1 cut(s)	332
DraI	TTTAAA	1 cut(s)	664
DraIII	CACNNNGTG	1 cut(s)	498
EciI	GGCGGA	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	789
Eco31I	GGTCTC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	455
Eco57I	CTGAAG	2 cut(s)	625, 711
EcoO109I	RGGNCCY	1 cut(s)	455
EcoRI	GAATTC	1 cut(s)	755
EcoT14I	CCWWGG	1 cut(s)	789
ErhI	CCWWGG	1 cut(s)	789
FaeI	CATG	5 cut(s)	45, 415, 601, 613, 798
FaqI	GGGAC	2 cut(s)	9, 468
FatI	CATG	5 cut(s)	41, 411, 597, 609, 794
FblI	GTMKAC	1 cut(s)	477
Fnu4HI	GCNGC	4 cut(s)	315, 353, 405, 655
FokI	GGATG	2 cut(s)	185, 234
Fsp4HI	GCNGC	4 cut(s)	315, 353, 405, 655
GluI	GCNGC	4 cut(s)	315, 353, 405, 655
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	3 cut(s)	240, 271, 762
HgaI	GACGC	2 cut(s)	541, 756
Hin1II	CATG	5 cut(s)	45, 415, 601, 613, 798
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HindIII	AAGCTT	2 cut(s)	88, 578
HinfI	GANTC	2 cut(s)	227, 252
HpaII	CCGG	3 cut(s)	240, 271, 762
HphI	GGTGA	2 cut(s)	331, 436
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	5 cut(s)	80, 130, 186, 557, 567
Hpy188III	TCNNGA	3 cut(s)	231, 598, 689
Hpy8I	GTNNAC	1 cut(s)	478
Hpy99I	CGWCG	3 cut(s)	491, 557, 750
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4V	TGCA	4 cut(s)	266, 419, 431, 462
HpyF10VI	GCNNNNNNNGC	1 cut(s)	651
HpyF3I	CTNAG	4 cut(s)	69, 123, 329, 588
Hsp92II	CATG	5 cut(s)	45, 415, 601, 613, 798
KflI	GGGWCCC	1 cut(s)	455
Kzo9I	GATC	1 cut(s)	332
LmnI	GCTCC	3 cut(s)	538, 631, 712
LpnPI	CCDG	9 cut(s)	122, 253, 284, 350, 472, 575, 671, 702, 775
Lsp1109I	GCAGC	4 cut(s)	301, 339, 391, 641
LweI	GCATC	1 cut(s)	688
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	1 cut(s)	334
MboI	GATC	1 cut(s)	332
MboII	GAAGA	3 cut(s)	163, 211, 704
MflI	RGATCY	1 cut(s)	332
MluCI	AATT	7 cut(s)	187, 295, 368, 432, 469, 665, 755
MlyI	GAGTC	1 cut(s)	246
MmeI	TCCRAC	3 cut(s)	199, 314, 535
MnlI	CCTC	8 cut(s)	49, 57, 115, 132, 155, 205, 505, 690
MroXI	GAANNNNTTC	1 cut(s)	180
MseI	TTAA	3 cut(s)	468, 663, 771
MspI	CCGG	3 cut(s)	240, 271, 762
MspR9I	CCNGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	1 cut(s)	651
NciI	CCSGG	1 cut(s)	240
NdeII	GATC	1 cut(s)	332
NlaIII	CATG	5 cut(s)	45, 415, 601, 613, 798
NlaIV	GGNNCC	5 cut(s)	456, 457, 493, 633, 714
NmuCI	GTSAC	1 cut(s)	424
PagI	TCATGA	1 cut(s)	597
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	227
PkrI	GCNGC	4 cut(s)	316, 354, 406, 656
PleI	GAGTC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	246
PpuMI	RGGWCCY	1 cut(s)	455
PshBI	ATTAAT	1 cut(s)	771
PsiI	TTATAA	1 cut(s)	366
Psp5II	RGGWCCY	1 cut(s)	455
PspN4I	GGNNCC	5 cut(s)	456, 457, 493, 633, 714
PspPI	GGNCC	1 cut(s)	455
PspPPI	RGGWCCY	1 cut(s)	455
PsuI	RGATCY	1 cut(s)	332
RsaI	GTAC	2 cut(s)	533, 777
RsaNI	GTAC	2 cut(s)	532, 776
SalI	GTCGAC	1 cut(s)	476
SaqAI	TTAA	3 cut(s)	468, 663, 771
SatI	GCNGC	4 cut(s)	315, 353, 405, 655
Sau3AI	GATC	1 cut(s)	332
Sau96I	GGNCC	1 cut(s)	455
ScaI	AGTACT	1 cut(s)	533
SchI	GAGTC	1 cut(s)	246
ScrFI	CCNGG	1 cut(s)	240
SetI	ASST	7 cut(s)	92, 316, 406, 483, 497, 582, 656
SfaNI	GCATC	1 cut(s)	688
SfcI	CTRYAG	1 cut(s)	649
SinI	GGWCC	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	707
SmoI	CTYRAG	1 cut(s)	707
Sse9I	AATT	7 cut(s)	187, 295, 368, 432, 469, 665, 755
SsiI	CCGC	4 cut(s)	50, 317, 393, 683
StyD4I	CCNGG	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	789
TaaI	ACNGT	1 cut(s)	466
TaqI	TCGA	1 cut(s)	477
TasI	AATT	7 cut(s)	187, 295, 368, 432, 469, 665, 755
TatI	WGTACW	2 cut(s)	531, 775
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	3 cut(s)	468, 663, 771
Tru9I	TTAA	3 cut(s)	468, 663, 771
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	4 cut(s)	314, 352, 404, 654
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	4 cut(s)	17, 189, 586, 614
TspRI	CASTG	1 cut(s)	469
VpaK11BI	GGWCC	1 cut(s)	455
VspI	ATTAAT	1 cut(s)	771
XapI	RAATTY	3 cut(s)	187, 665, 755
XmiI	GTMKAC	1 cut(s)	477
XmnI	GAANNNNTTC	1 cut(s)	180
ZrmI	AGTACT	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.