Rmu_sc0038749.1_g000002

Domain of unknown function (DUF4033)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038749.1
OG0002743
Physical Location & Seq
Forward (+)
540 .. 1066
527 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038749.1_g000002.1.cds

Sequence Viewer

Length: 426 bp
atgaaggcattggctgttgtttgccccccaagaatttccttctcctcctcctcatggcaacaacgacaccttcggcttcggtccaaaccaaaatcccagctccgaattagctcacggtttcgggtctcgtcttgtttgataaaagagggagaaaggcagaaacacaaaggtggagtggtggatgagttgttgctgaatgtgttcaggaacaaaatggttaaacaagtgggatgggattccgataagccgggatacgatggactaattgaagttgccaaccggatgatgcttaacaacccaacaaattctgatactaaagaagctgccgtactctctctctctctctctctcaactttctatgtttcagaatacaatgcatgtacatatcttgcattcctactcattatagtagaacccagatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4033

Protein Analysis

141

Amino Acids

16.12

Weight (kDa)

9.98

Isoelectric Point (pI)

52.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 33, 304
AfaI GTAC 2 cut(s) 330, 383
AfiI CCNNNNNNNGG 1 cut(s) 54
AgsI TTSAA 1 cut(s) 269
AleI CACNNNNGTG 1 cut(s) 168
AluBI AGCT 3 cut(s) 100, 111, 323
AluI AGCT 3 cut(s) 100, 111, 323
Alw26I GTCTC 1 cut(s) 130
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 2 cut(s) 33, 304
Asp700I GAANNNNTTC 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 81
AsuC2I CCSGG 1 cut(s) 249
AvaII GGWCC 1 cut(s) 81
BarI GAAGNNNNNNTAC 2 cut(s) 312, 344
BbvI GCAGC 1 cut(s) 310
BccI CCATC 2 cut(s) 225, 251
BceAI ACGGC 1 cut(s) 311
BciVI GTATCC 1 cut(s) 245
BcnI CCSGG 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 130
BfuI GTATCC 1 cut(s) 245
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 81
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 276
BpuMI CCSGG 1 cut(s) 249
BsaI GGTCTC 1 cut(s) 130
BsaWI WCCGGW 1 cut(s) 279
Bsc4I CCNNNNNNNGG 1 cut(s) 54
BseGI GGATG 3 cut(s) 187, 236, 288
BseLI CCNNNNNNNGG 1 cut(s) 54
BseRI GAGGAG 3 cut(s) 34, 37, 40
BseXI GCAGC 1 cut(s) 310
BseYI CCCAGC 1 cut(s) 96
BsiSI CCGG 2 cut(s) 248, 280
BslI CCNNNNNNNGG 1 cut(s) 54
BsmAI GTCTC 1 cut(s) 130
BsmI GAATGC 1 cut(s) 393
Bso31I GGTCTC 1 cut(s) 130
Bsp1407I TGTACA 1 cut(s) 381
BspTNI GGTCTC 1 cut(s) 130
BsrGI TGTACA 1 cut(s) 381
Bst4CI ACNGT 1 cut(s) 117
BstAUI TGTACA 1 cut(s) 381
BstF5I GGATG 3 cut(s) 187, 236, 288
BstMAI GTCTC 1 cut(s) 130
BstNSI RCATGY 1 cut(s) 382
BstSCI CCNGG 1 cut(s) 247
BstV1I GCAGC 1 cut(s) 310
BsuI GTATCC 1 cut(s) 245
BtsCI GGATG 3 cut(s) 187, 236, 288
Cfr13I GGNCC 1 cut(s) 81
Csp6I GTAC 2 cut(s) 329, 382
CviAII CATG 2 cut(s) 54, 379
CviJI RGCY 6 cut(s) 14, 76, 100, 111, 247, 323
CviKI_1 RGCY 6 cut(s) 14, 76, 100, 111, 247, 323
CviQI GTAC 2 cut(s) 329, 382
Eco31I GGTCTC 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 81
EcoT22I ATGCAT 1 cut(s) 380
FaeI CATG 2 cut(s) 57, 382
FaiI YATR 5 cut(s) 55, 361, 380, 386, 408
FatI CATG 2 cut(s) 53, 378
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 3 cut(s) 194, 243, 295
Fsp4HI GCNGC 1 cut(s) 324
GluI GCNGC 1 cut(s) 324
GsaI CCCAGC 1 cut(s) 100
HapII CCGG 2 cut(s) 248, 280
Hin1II CATG 2 cut(s) 57, 382
HinfI GANTC 1 cut(s) 236
HpaII CCGG 2 cut(s) 248, 280
Hpy188I TCNGA 4 cut(s) 104, 241, 310, 368
Hpy188III TCNNGA 1 cut(s) 205
HpyAV CCTTC 2 cut(s) 49, 80
HpyCH4III ACNGT 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 378, 393
Hsp92II CATG 2 cut(s) 57, 382
LmnI GCTCC 1 cut(s) 105
LpnPI CCDG 4 cut(s) 110, 190, 261, 293
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 1 cut(s) 276
MluCI AATT 4 cut(s) 33, 105, 264, 304
MnlI CCTC 4 cut(s) 55, 58, 61, 139
Mph1103I ATGCAT 1 cut(s) 380
MroXI GAANNNNTTC 1 cut(s) 200
MseI TTAA 2 cut(s) 219, 291
MslI CAYNNNNRTG 1 cut(s) 168
MspI CCGG 2 cut(s) 248, 280
MspR9I CCNGG 1 cut(s) 249
Mva1269I GAATGC 1 cut(s) 393
NciI CCSGG 1 cut(s) 249
NlaIII CATG 2 cut(s) 57, 382
NsiI ATGCAT 1 cut(s) 380
NspI RCATGY 1 cut(s) 382
OliI CACNNNNGTG 1 cut(s) 168
PctI GAATGC 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 200
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 325
PspFI CCCAGC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 81
RsaI GTAC 2 cut(s) 330, 383
RsaNI GTAC 2 cut(s) 329, 382
RseI CAYNNNNRTG 1 cut(s) 168
SaqAI TTAA 2 cut(s) 219, 291
SatI GCNGC 1 cut(s) 324
Sau96I GGNCC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 249
SetI ASST 5 cut(s) 72, 102, 113, 172, 325
SfaNI GCATC 1 cut(s) 276
SinI GGWCC 1 cut(s) 81
SmiMI CAYNNNNRTG 1 cut(s) 168
Sse9I AATT 4 cut(s) 33, 105, 264, 304
StyD4I CCNGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 117
TaqII GACCGA 1 cut(s) 69
TasI AATT 4 cut(s) 33, 105, 264, 304
TatI WGTACW 1 cut(s) 381
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 2 cut(s) 219, 291
Tru9I TTAA 2 cut(s) 219, 291
TseI GCWGC 1 cut(s) 323
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 81
XapI RAATTY 2 cut(s) 33, 304
XceI RCATGY 1 cut(s) 382
XmnI GAANNNNTTC 1 cut(s) 200
Zsp2I ATGCAT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.