Rh3CG315600

Domain of unknown function (DUF4033)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0002743
Physical Location & Seq
Forward (+)
33595181 .. 33597630
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG315600.1

Sequence Viewer

Length: 801 bp
ATGAAGGCATTGGCTGTTGTTTGCCCCCCAAGAATTTCCTTCTCCTCCTCCTCATGGCAACAACGACACCTTCGGCTTCGGTCCAAACCAAAATCCCAGCTCCGAATTAGCTCACGGTTTCGGGTCTCGTCTTGTTTGATAAAAGAGGGAGAAAGGCAGAAACACAAAGGTGGAGCGGTGGATGAGTTGTTGCTGAATGTGTTCAGGAACAAAATGGTTAAACAAGTGGGATGGGATTCCGATAAGCCGGGATACGATGGACTAATTGAAGTTGCCAACCGGATGATGCTTAACAACCCAACAAATTCTGATACTAAAGAAGCTGCCGTCCGAGTTCTGATATCTTTGTTTCCACCATTCCTGTTAGAACTGTATAAACTGCTTATAGCTCCTATACAAGGCGGAAAAATAGCCGCCCTCATGGTTGCAAGGGTGACTGCAATCAGTTGTCAATGGCTCATGGGCCCCTGTACTGTTAATTCTGTCGACCTACCCGATGGGAATTCATGGACTAGTGGGGTGTTTGTCGAGAAATGCAAGTACTTGGAGGAAAGCAAATGTGTAGGGATCTGTGTCAATACTTGTAAGCTTCCAACTCAGTCTTTTTTCAAGGATTACATGGGTGTCCCTTTACTGATGGAACCGAACTTCAACGACTATAGCTGCCAGTTTAAATTCGGGGTCCTTCCTCCACTTCCCGAAGACGACGCCGCTCTCAAGGAGCCTTGCTTAGCCATATGCCCTAATGCTACCCGAAGAAGAGAAAGAAACATTAATATAGAGCAGTGTCCCAAGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4033

Protein Analysis

266

Amino Acids

29.81

Weight (kDa)

9.14

Isoelectric Point (pI)

51.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
D27-like_C PF13225 152 - 233 3.4e-35 Beta-carotene isomerase D27-like, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 176, 713
AccI GTMKAC 1 cut(s) 486
AciI CCGC 4 cut(s) 176, 402, 414, 711
AclWI GGATC 1 cut(s) 575
AcsI RAATTY 4 cut(s) 33, 304, 502, 674
AcyI GRCGYC 1 cut(s) 708
AfaI GTAC 2 cut(s) 472, 542
AfiI CCNNNNNNNGG 2 cut(s) 54, 398
AgsI TTSAA 3 cut(s) 269, 610, 652
AhlI ACTAGT 1 cut(s) 512
AleI CACNNNNGTG 1 cut(s) 168
AluBI AGCT 6 cut(s) 100, 111, 323, 389, 589, 663
AluI AGCT 6 cut(s) 100, 111, 323, 389, 589, 663
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 1 cut(s) 575
AoxI GGCC 1 cut(s) 463
ApaI GGGCCC 1 cut(s) 467
ApeKI GCWGC 2 cut(s) 323, 663
ApoI RAATTY 4 cut(s) 33, 304, 502, 674
AseI ATTAAT 1 cut(s) 774
Asp700I GAANNNNTTC 1 cut(s) 200
AspS9I GGNCC 4 cut(s) 81, 463, 464, 682
AsuC2I CCSGG 1 cut(s) 249
AsuHPI GGTGA 1 cut(s) 445
AvaII GGWCC 2 cut(s) 81, 682
BaeGI GKGCMC 1 cut(s) 467
BanII GRGCYC 1 cut(s) 467
BbsI GAAGAC 1 cut(s) 708
BbvI GCAGC 2 cut(s) 310, 650
BccI CCATC 4 cut(s) 225, 251, 491, 631
BceAI ACGGC 1 cut(s) 311
BciVI GTATCC 1 cut(s) 245
BcnI CCSGG 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 130
BcuI ACTAGT 1 cut(s) 512
BfaI CTAG 1 cut(s) 513
BfmI CTRYAG 1 cut(s) 658
BfuI GTATCC 1 cut(s) 245
BisI GCNGC 4 cut(s) 324, 414, 664, 711
BlpI GCTNAGC 1 cut(s) 730
BlsI GCNGC 4 cut(s) 325, 415, 665, 712
BmcAI AGTACT 1 cut(s) 542
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 2 cut(s) 81, 682
BmgT120I GGNCC 4 cut(s) 81, 463, 464, 682
BmiI GGNNCC 5 cut(s) 465, 466, 642, 683, 723
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 708
Bpu1102I GCTNAGC 1 cut(s) 730
BpuEI CTTGAG 1 cut(s) 701
BpuMI CCSGG 1 cut(s) 249
BsaHI GRCGYC 1 cut(s) 708
BsaI GGTCTC 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 792
BsaWI WCCGGW 1 cut(s) 279
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 398
Bse1I ACTGG 1 cut(s) 667
BseDI CCNNGG 1 cut(s) 792
BseGI GGATG 3 cut(s) 187, 236, 288
BseLI CCNNNNNNNGG 2 cut(s) 54, 398
BseMII CTCAG 1 cut(s) 611
BseNI ACTGG 1 cut(s) 667
BseRI GAGGAG 3 cut(s) 34, 37, 40
BseSI GKGCMC 1 cut(s) 467
BseXI GCAGC 2 cut(s) 310, 650
BseYI CCCAGC 1 cut(s) 96
BshFI GGCC 1 cut(s) 465
BsiSI CCGG 2 cut(s) 248, 280
BslFI GGGAC 2 cut(s) 611, 774
BslI CCNNNNNNNGG 2 cut(s) 54, 398
BsmAI GTCTC 1 cut(s) 130
BsmFI GGGAC 2 cut(s) 611, 774
BsnI GGCC 1 cut(s) 465
Bso31I GGTCTC 1 cut(s) 130
Bsp120I GGGCCC 1 cut(s) 463
Bsp1286I GDGCHC 1 cut(s) 467
Bsp143I GATC 1 cut(s) 567
Bsp1720I GCTNAGC 1 cut(s) 730
BspACI CCGC 4 cut(s) 176, 402, 414, 711
BspANI GGCC 1 cut(s) 465
BspCNI CTCAG 1 cut(s) 610
BspLI GGNNCC 5 cut(s) 465, 466, 642, 683, 723
BspPI GGATC 1 cut(s) 575
BspTNI GGTCTC 1 cut(s) 130
BsrBI CCGCTC 2 cut(s) 176, 713
BsrI ACTGG 1 cut(s) 667
BssECI CCNNGG 1 cut(s) 792
BssMI GATC 1 cut(s) 567
BssNI GRCGYC 1 cut(s) 708
BssT1I CCWWGG 1 cut(s) 792
Bst4CI ACNGT 3 cut(s) 117, 372, 475
Bst6I CTCTTC 1 cut(s) 754
BstACI GRCGYC 1 cut(s) 708
BstDEI CTNAG 2 cut(s) 597, 730
BstENI CCTNNNNNAGG 1 cut(s) 396
BstF5I GGATG 3 cut(s) 187, 236, 288
BstKTI GATC 1 cut(s) 570
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 1 cut(s) 567
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 1 cut(s) 658
BstSLI GKGCMC 1 cut(s) 467
BstV1I GCAGC 2 cut(s) 310, 650
BstV2I GAAGAC 1 cut(s) 708
BstX2I RGATCY 1 cut(s) 567
BstYI RGATCY 1 cut(s) 567
BsuI GTATCC 1 cut(s) 245
BsuRI GGCC 1 cut(s) 465
BtsCI GGATG 3 cut(s) 187, 236, 288
BtsI GCAGTG 1 cut(s) 791
BtsIMutI CAGTG 1 cut(s) 791
Cfr13I GGNCC 4 cut(s) 81, 463, 464, 682
CseI GACGC 1 cut(s) 716
Csp6I GTAC 2 cut(s) 471, 541
CviAII CATG 5 cut(s) 54, 421, 460, 507, 619
CviQI GTAC 2 cut(s) 471, 541
DdeI CTNAG 2 cut(s) 597, 730
DpnI GATC 1 cut(s) 569
DpnII GATC 1 cut(s) 567
DraI TTTAAA 1 cut(s) 673
Eam1104I CTCTTC 1 cut(s) 754
EarI CTCTTC 1 cut(s) 754
EciI GGCGGA 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 792
Eco24I GRGCYC 1 cut(s) 467
Eco31I GGTCTC 1 cut(s) 130
Eco32I GATATC 1 cut(s) 342
Eco47I GGWCC 2 cut(s) 81, 682
EcoNI CCTNNNNNAGG 1 cut(s) 396
EcoO109I RGGNCCY 2 cut(s) 464, 682
EcoRI GAATTC 1 cut(s) 502
EcoRV GATATC 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 792
EcoT38I GRGCYC 1 cut(s) 467
ErhI CCWWGG 1 cut(s) 792
FaeI CATG 5 cut(s) 57, 424, 463, 510, 622
FaqI GGGAC 2 cut(s) 611, 774
FatI CATG 5 cut(s) 53, 420, 459, 506, 618
FauNDI CATATG 1 cut(s) 737
FblI GTMKAC 1 cut(s) 486
Fnu4HI GCNGC 4 cut(s) 324, 414, 664, 711
FokI GGATG 3 cut(s) 194, 243, 295
FriOI GRGCYC 1 cut(s) 467
Fsp4HI GCNGC 4 cut(s) 324, 414, 664, 711
FspBI CTAG 1 cut(s) 513
GluI GCNGC 4 cut(s) 324, 414, 664, 711
GsaI CCCAGC 1 cut(s) 100
HaeIII GGCC 1 cut(s) 465
HapII CCGG 2 cut(s) 248, 280
HgaI GACGC 1 cut(s) 716
Hin1I GRCGYC 1 cut(s) 708
Hin1II CATG 5 cut(s) 57, 424, 463, 510, 622
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HindIII AAGCTT 1 cut(s) 587
HinfI GANTC 1 cut(s) 236
HpaII CCGG 2 cut(s) 248, 280
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 1 cut(s) 487
Hpy188I TCNGA 5 cut(s) 104, 241, 310, 332, 339
Hpy188III TCNNGA 3 cut(s) 205, 529, 698
Hpy8I GTNNAC 1 cut(s) 487
Hpy99I CGWCG 1 cut(s) 710
HpyAV CCTTC 3 cut(s) 49, 80, 695
HpyCH4III ACNGT 3 cut(s) 117, 372, 475
HpyCH4V TGCA 3 cut(s) 428, 440, 537
HpyF3I CTNAG 2 cut(s) 597, 730
Hsp92I GRCGYC 1 cut(s) 708
Hsp92II CATG 5 cut(s) 57, 424, 463, 510, 622
Kzo9I GATC 1 cut(s) 567
LmnI GCTCC 4 cut(s) 105, 173, 394, 721
LpnPI CCDG 7 cut(s) 110, 190, 261, 293, 374, 481, 680
Lsp1109I GCAGC 2 cut(s) 310, 650
LweI GCATC 1 cut(s) 276
MaeI CTAG 1 cut(s) 513
MaeIII GTNAC 1 cut(s) 433
MalI GATC 1 cut(s) 569
MbiI CCGCTC 2 cut(s) 176, 713
MboI GATC 1 cut(s) 567
MboII GAAGA 3 cut(s) 713, 768, 771
MflI RGATCY 1 cut(s) 567
MhlI GDGCHC 1 cut(s) 467
MluCI AATT 7 cut(s) 33, 105, 264, 304, 478, 502, 674
MmeI TCCRAC 1 cut(s) 617
MnlI CCTC 7 cut(s) 55, 58, 61, 139, 428, 541, 699
MroXI GAANNNNTTC 1 cut(s) 200
MseI TTAA 5 cut(s) 219, 291, 477, 672, 774
MslI CAYNNNNRTG 1 cut(s) 168
MspI CCGG 2 cut(s) 248, 280
MspR9I CCNGG 1 cut(s) 249
NciI CCSGG 1 cut(s) 249
NdeI CATATG 1 cut(s) 737
NdeII GATC 1 cut(s) 567
NlaIII CATG 5 cut(s) 57, 424, 463, 510, 622
NlaIV GGNNCC 5 cut(s) 465, 466, 642, 683, 723
NmuCI GTSAC 1 cut(s) 433
OliI CACNNNNGTG 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 492
PdmI GAANNNNTTC 1 cut(s) 200
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 4 cut(s) 325, 415, 665, 712
PpuMI RGGWCCY 1 cut(s) 682
PshBI ATTAAT 1 cut(s) 774
Psp5II RGGWCCY 1 cut(s) 682
PspFI CCCAGC 1 cut(s) 96
PspN4I GGNNCC 5 cut(s) 465, 466, 642, 683, 723
PspOMI GGGCCC 1 cut(s) 463
PspPI GGNCC 4 cut(s) 81, 463, 464, 682
PspPPI RGGWCCY 1 cut(s) 682
PsuI RGATCY 1 cut(s) 567
RsaI GTAC 2 cut(s) 472, 542
RsaNI GTAC 2 cut(s) 471, 541
RseI CAYNNNNRTG 1 cut(s) 168
SalI GTCGAC 1 cut(s) 485
SaqAI TTAA 5 cut(s) 219, 291, 477, 672, 774
SatI GCNGC 4 cut(s) 324, 414, 664, 711
Sau3AI GATC 1 cut(s) 567
Sau96I GGNCC 4 cut(s) 81, 463, 464, 682
ScaI AGTACT 1 cut(s) 542
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 1 cut(s) 467
SetI ASST 9 cut(s) 72, 102, 113, 172, 325, 391, 492, 591, 665
SfaNI GCATC 1 cut(s) 276
SfcI CTRYAG 1 cut(s) 658
SinI GGWCC 2 cut(s) 81, 682
SmiMI CAYNNNNRTG 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 716
SmoI CTYRAG 1 cut(s) 716
SpeI ACTAGT 1 cut(s) 512
Sse9I AATT 7 cut(s) 33, 105, 264, 304, 478, 502, 674
SsiI CCGC 4 cut(s) 176, 402, 414, 711
SspMI CTAG 1 cut(s) 513
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 1 cut(s) 792
TaaI ACNGT 3 cut(s) 117, 372, 475
TaqI TCGA 2 cut(s) 486, 528
TaqII GACCGA 1 cut(s) 69
TasI AATT 7 cut(s) 33, 105, 264, 304, 478, 502, 674
TatI WGTACW 2 cut(s) 470, 540
TauI GCSGC 2 cut(s) 416, 713
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 5 cut(s) 219, 291, 477, 672, 774
Tru9I TTAA 5 cut(s) 219, 291, 477, 672, 774
TscAI CASTG 1 cut(s) 791
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 2 cut(s) 323, 663
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 2 cut(s) 17, 495
TspRI CASTG 1 cut(s) 791
VpaK11BI GGWCC 2 cut(s) 81, 682
VspI ATTAAT 1 cut(s) 774
XagI CCTNNNNNAGG 1 cut(s) 396
XapI RAATTY 4 cut(s) 33, 304, 502, 674
XmiI GTMKAC 1 cut(s) 486
XmnI GAANNNNTTC 1 cut(s) 200
XspI CTAG 1 cut(s) 513
ZrmI AGTACT 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.