Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004936

Physical Location & Seq

Genomic Coordinates Forward (+)

2651237 .. 2654951

Gene Structure 3715 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G036800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGCAAACCCCAATTAATCATAAAAAATCAAAATTGGTCATTTTCGCATTGCTGGGAAGTTGTGAAGTGAAGATGGTGAAGCTGACAATGATCGCTCGTGTTACTGACGGTCTTCCTCTAGCAGAGGGACTGGATGATGGCCGTGATATACAAGACTCGGAATTCTACAAACAACAAGTCAAGGCCCTATTCAAGAACTTGTCGAGAGGCCAAAATGAGCCTTCAAGGATGTCAGTCGAAACCGGACCTTATGTTTTCCACTATATCATAGAAGGACGTGTCTGTTACTTGACAATGTGTGACCGTGCCTATCCAAAGAAACTTGCCTTCCAATACCTTGAAGATCTCAAAAATGAATTTGAGCGTGTTAATGGGACCCAAATTGAAACTGCTGCGAGACCTTATGCATTCATTAAATTTGATACATTCATACAGAAAACAAAGAAATTGTACCAGGACACTCGCACTCAGCGGAATATTGCAAAGTTGAACGATGAGCTCTATGAAGTCCACCAAATAATGACTCGCAATGTTCAGGAAGTTCTTGGTGTTGGTGAAAAGTTGGACCAGGTCAGTCAAATGTCTAGCCGTTTAACATCAGAATCTCGCATATATGCTGATAAGGCGAGAGATTTGAATCGACAGGCTCTGATCCGAAAGTGGGCTCCTGTTGCCATTGTGCTAGGACTTGTTTTCCTTCTTTTCTGGGTAATAAAGCTCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 ko05134 map04130 map04145 map05134

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

242

Amino Acids

27.95

Weight (kDa)

9.38

Isoelectric Point (pI)

37.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11890
fragaria_vesca	FvH4_6g35230
malus_domestica	MD09G1177400.v1.1 MD17G1149000.v1.1
prunus_persica	Prupe.3G036800_v2.0.a1 Prupe.3G036800_v2.0.a1 Prupe.3G036800_v2.0.a1
pyrus_communis	pycom09g09560 pycom17g14280
rosa_chinensis	RchiOBHm_Chr2g0091761 RchiOBHm_Chr2g0146571
rosa_laevigata	RLG00000020208
rosa_multiflora	Rmu_sc0001986.1_g000029
rosa_roxburghii	Rroxscaffold_1G00025120 Rroxscaffold_2G00091680 Rroxscaffold_2G00100030
rosa_rugosa	Rorug02G0107300 Rorug02G0107300 Rorug02G0107400 Rorug02G0107500 Rorug02G0394800 Rorug02G0394800 Rorug02G0394900 Rorug02G0395000
rosa_samantha	Rh2AG451700 Rh2BG464500 Rh2CG438600 Rh2DG473500 Rh6AG134600
rosa_wichuraiana	Rw2G036900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	472
AclWI	GGATC	1 cut(s)	646
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	3 cut(s)	161, 356, 416
AfaI	GTAC	1 cut(s)	452
AfiI	CCNNNNNNNGG	1 cut(s)	661
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	6 cut(s)	193, 225, 341, 386, 490, 637
AjiI	CACGTC	1 cut(s)	278
AjnI	CCWGG	2 cut(s)	453, 567
AluBI	AGCT	3 cut(s)	82, 499, 718
AluI	AGCT	3 cut(s)	82, 499, 718
Alw21I	GWGCWC	1 cut(s)	501
Alw26I	GTCTC	1 cut(s)	391
AlwI	GGATC	1 cut(s)	646
AlwNI	CAGNNNCTG	1 cut(s)	649
AoxI	GGCC	3 cut(s)	139, 183, 208
ApeKI	GCWGC	1 cut(s)	392
ApoI	RAATTY	3 cut(s)	161, 356, 416
ArsI	GACNNNNNNTTYG	2 cut(s)	162, 194
AseI	ATTAAT	1 cut(s)	15
AspS9I	GGNCC	4 cut(s)	184, 245, 375, 565
AsuHPI	GGTGA	2 cut(s)	88, 566
AvaII	GGWCC	3 cut(s)	245, 375, 565
BanII	GRGCYC	2 cut(s)	501, 667
BauI	CACGAG	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	104
Bbv12I	GWGCWC	1 cut(s)	501
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	2 cut(s)	67, 131
BceAI	ACGGC	2 cut(s)	126, 573
BciT130I	CCWGG	2 cut(s)	455, 569
BcoDI	GTCTC	1 cut(s)	391
BfaI	CTAG	3 cut(s)	119, 585, 683
BglII	AGATCT	1 cut(s)	343
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
Bme1390I	CCNGG	2 cut(s)	455, 569
Bme18I	GGWCC	3 cut(s)	245, 375, 565
BmgBI	CACGTC	1 cut(s)	278
BmgT120I	GGNCC	4 cut(s)	184, 245, 375, 565
BmiI	GGNNCC	3 cut(s)	376, 377, 666
BmrFI	CCNGG	2 cut(s)	455, 569
BpiI	GAAGAC	1 cut(s)	104
BsaBI	GATNNNNATC	1 cut(s)	636
BsaI	GGTCTC	1 cut(s)	391
BsaWI	WCCGGW	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	661
Bse1I	ACTGG	1 cut(s)	135
Bse3DI	GCAATG	2 cut(s)	47, 535
Bse8I	GATNNNNATC	1 cut(s)	636
BseBI	CCWGG	2 cut(s)	455, 569
BseGI	GGATG	2 cut(s)	139, 234
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	1 cut(s)	661
BseMI	GCAATG	2 cut(s)	47, 535
BseMII	CTCAG	1 cut(s)	482
BseNI	ACTGG	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	379
BseYI	CCCAGC	1 cut(s)	52
BshFI	GGCC	3 cut(s)	141, 185, 210
BsiHKAI	GWGCWC	1 cut(s)	501
BsiSI	CCGG	1 cut(s)	243
BslFI	GGGAC	2 cut(s)	141, 388
BslI	CCNNNNNNNGG	1 cut(s)	661
BsmAI	GTCTC	1 cut(s)	391
BsmFI	GGGAC	2 cut(s)	141, 388
BsmI	GAATGC	1 cut(s)	407
BsnI	GGCC	3 cut(s)	141, 185, 210
Bso31I	GGTCTC	1 cut(s)	391
Bsp1286I	GDGCHC	2 cut(s)	501, 667
Bsp143I	GATC	3 cut(s)	90, 343, 651
BspACI	CCGC	1 cut(s)	472
BspANI	GGCC	3 cut(s)	141, 185, 210
BspCNI	CTCAG	1 cut(s)	481
BspLI	GGNNCC	3 cut(s)	376, 377, 666
BspPI	GGATC	1 cut(s)	646
BspTNI	GGTCTC	1 cut(s)	391
BsrDI	GCAATG	2 cut(s)	47, 535
BsrI	ACTGG	1 cut(s)	135
BssMI	GATC	3 cut(s)	90, 343, 651
BssSI	CACGAG	1 cut(s)	96
Bst2BI	CACGAG	1 cut(s)	96
Bst2UI	CCWGG	2 cut(s)	455, 569
Bst4CI	ACNGT	2 cut(s)	110, 305
BstDEI	CTNAG	1 cut(s)	468
BstF5I	GGATG	2 cut(s)	139, 234
BstKTI	GATC	3 cut(s)	93, 346, 654
BstMAI	GTCTC	1 cut(s)	391
BstMBI	GATC	3 cut(s)	90, 343, 651
BstMWI	GCNNNNNNNGC	2 cut(s)	623, 671
BstNI	CCWGG	2 cut(s)	455, 569
BstSCI	CCNGG	2 cut(s)	453, 567
BstV1I	GCAGC	1 cut(s)	379
BstV2I	GAAGAC	1 cut(s)	104
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuRI	GGCC	3 cut(s)	141, 185, 210
BtrI	CACGTC	1 cut(s)	278
BtsCI	GGATG	2 cut(s)	139, 234
CaiI	CAGNNNCTG	1 cut(s)	649
Cfr13I	GGNCC	4 cut(s)	184, 245, 375, 565
CsiI	ACCWGGT	1 cut(s)	567
Csp6I	GTAC	1 cut(s)	451
CviQI	GTAC	1 cut(s)	451
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	3 cut(s)	92, 345, 653
DpnII	GATC	3 cut(s)	90, 343, 651
EaeI	YGGCCR	1 cut(s)	139
Ecl136II	GAGCTC	1 cut(s)	499
Eco24I	GRGCYC	2 cut(s)	501, 667
Eco31I	GGTCTC	1 cut(s)	391
Eco47I	GGWCC	3 cut(s)	245, 375, 565
Eco53kI	GAGCTC	1 cut(s)	499
EcoICRI	GAGCTC	1 cut(s)	499
EcoO109I	RGGNCCY	2 cut(s)	184, 375
EcoRI	GAATTC	1 cut(s)	161
EcoRII	CCWGG	2 cut(s)	453, 567
EcoT22I	ATGCAT	1 cut(s)	409
EcoT38I	GRGCYC	2 cut(s)	501, 667
FaqI	GGGAC	2 cut(s)	141, 388
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	2 cut(s)	146, 241
FriOI	GRGCYC	2 cut(s)	501, 667
Fsp4HI	GCNGC	1 cut(s)	393
FspBI	CTAG	3 cut(s)	119, 585, 683
GluI	GCNGC	1 cut(s)	393
GsaI	CCCAGC	1 cut(s)	56
HaeIII	GGCC	3 cut(s)	141, 185, 210
HapII	CCGG	1 cut(s)	243
HinfI	GANTC	4 cut(s)	155, 523, 602, 637
HpaII	CCGG	1 cut(s)	243
HphI	GGTGA	2 cut(s)	88, 566
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	5 cut(s)	160, 601, 651, 656, 722
Hpy188III	TCNNGA	3 cut(s)	193, 204, 536
Hpy8I	GTNNAC	1 cut(s)	511
HpyAV	CCTTC	4 cut(s)	231, 266, 337, 707
HpyCH4III	ACNGT	2 cut(s)	110, 305
HpyCH4IV	ACGT	1 cut(s)	277
HpyCH4V	TGCA	3 cut(s)	4, 407, 482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	623, 671
HpyF3I	CTNAG	1 cut(s)	468
HpySE526I	ACGT	1 cut(s)	277
KflI	GGGWCCC	1 cut(s)	375
Kzo9I	GATC	3 cut(s)	90, 343, 651
LmnI	GCTCC	2 cut(s)	670, 723
Lsp1109I	GCAGC	1 cut(s)	379
MabI	ACCWGGT	1 cut(s)	567
MaeI	CTAG	3 cut(s)	119, 585, 683
MaeII	ACGT	1 cut(s)	277
MaeIII	GTNAC	3 cut(s)	100, 284, 299
MalI	GATC	3 cut(s)	92, 345, 653
MboI	GATC	3 cut(s)	90, 343, 651
MboII	GAAGA	3 cut(s)	82, 104, 353
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	2 cut(s)	501, 667
MluCI	AATT	7 cut(s)	12, 32, 161, 356, 381, 416, 446
MlyI	GAGTC	2 cut(s)	149, 517
MmeI	TCCRAC	1 cut(s)	543
MnlI	CCTC	3 cut(s)	118, 126, 200
Mph1103I	ATGCAT	1 cut(s)	409
MseI	TTAA	4 cut(s)	15, 369, 414, 593
MspA1I	CMGCKG	1 cut(s)	472
MspI	CCGG	1 cut(s)	243
MspR9I	CCNGG	2 cut(s)	455, 569
Mva1269I	GAATGC	1 cut(s)	407
MvaI	CCWGG	2 cut(s)	455, 569
MwoI	GCNNNNNNNGC	2 cut(s)	623, 671
NdeII	GATC	3 cut(s)	90, 343, 651
NlaIV	GGNNCC	3 cut(s)	376, 377, 666
NmuCI	GTSAC	1 cut(s)	299
NsiI	ATGCAT	1 cut(s)	409
PctI	GAATGC	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	602, 637
PflFI	GACNNNGTC	1 cut(s)	569
PkrI	GCNGC	1 cut(s)	394
PleI	GAGTC	2 cut(s)	149, 517
PpsI	GAGTC	2 cut(s)	149, 517
PpuMI	RGGWCCY	1 cut(s)	375
PshBI	ATTAAT	1 cut(s)	15
Psp124BI	GAGCTC	1 cut(s)	501
Psp5II	RGGWCCY	1 cut(s)	375
Psp6I	CCWGG	2 cut(s)	453, 567
PspFI	CCCAGC	1 cut(s)	52
PspGI	CCWGG	2 cut(s)	453, 567
PspN4I	GGNNCC	3 cut(s)	376, 377, 666
PspPI	GGNCC	4 cut(s)	184, 245, 375, 565
PspPPI	RGGWCCY	1 cut(s)	375
PstNI	CAGNNNCTG	1 cut(s)	649
PsuI	RGATCY	1 cut(s)	343
PsyI	GACNNNGTC	1 cut(s)	569
RsaI	GTAC	1 cut(s)	452
RsaNI	GTAC	1 cut(s)	451
SacI	GAGCTC	1 cut(s)	501
SaqAI	TTAA	4 cut(s)	15, 369, 414, 593
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	3 cut(s)	90, 343, 651
Sau96I	GGNCC	4 cut(s)	184, 245, 375, 565
SchI	GAGTC	2 cut(s)	149, 517
ScrFI	CCNGG	2 cut(s)	455, 569
SduI	GDGCHC	2 cut(s)	501, 667
SetI	ASST	8 cut(s)	84, 250, 280, 339, 403, 501, 573, 720
SexAI	ACCWGGT	1 cut(s)	567
SinI	GGWCC	3 cut(s)	245, 375, 565
Sse9I	AATT	7 cut(s)	12, 32, 161, 356, 381, 416, 446
SsiI	CCGC	1 cut(s)	472
SspI	AATATT	1 cut(s)	478
SspMI	CTAG	3 cut(s)	119, 585, 683
SstI	GAGCTC	1 cut(s)	501
StyD4I	CCNGG	2 cut(s)	453, 567
TaaI	ACNGT	2 cut(s)	110, 305
TaiI	ACGT	1 cut(s)	280
TaqI	TCGA	3 cut(s)	203, 237, 640
TasI	AATT	7 cut(s)	12, 32, 161, 356, 381, 416, 446
TfiI	GAWTC	2 cut(s)	602, 637
Tru1I	TTAA	4 cut(s)	15, 369, 414, 593
Tru9I	TTAA	4 cut(s)	15, 369, 414, 593
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	1 cut(s)	392
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	4 cut(s)	369, 400, 418, 519
Tth111I	GACNNNGTC	1 cut(s)	569
VpaK11BI	GGWCC	3 cut(s)	245, 375, 565
VspI	ATTAAT	1 cut(s)	15
XapI	RAATTY	3 cut(s)	161, 356, 416
XspI	CTAG	3 cut(s)	119, 585, 683
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.