Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004936

Physical Location & Seq

Genomic Coordinates Reverse (-)

20379618 .. 20404253

Gene Structure 24636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG134600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCTTCAGTAATTGCCACCAAATCTTGCCTCTATTCAATTAGCCAGGCTTTCAATACATTCATACAGAGAACCAAGAAATTGTACCAGGACACTTGTACTCAGCGGACTATTTCAAAGTTGAATAATGAACTCTATGAAGTCCACCAAATAATGACTTGCAATGTTCAGGAAGTTCTTGGCGTCGGTGAAAAGTTGGACTATAAGGCAAGAGACTTGAATCAACAGGCTCTGATCCGTAAGTGGGCTCCTGTTGCCATGCTCTGCAGCCAATTGTTATTGGGTACTTTGTCTGCAAAGCGGATTCTCGATCAAACCGGAAACGCAGAGAAAGTATGGAGGAACTCGGTTGACAGTGTTGCTAATTCACTTGAGCTTCAGTTCAGTTGGTTCACTAGAAGAGCTGGTAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 ko05134 map04130 map04145 map05134

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

137

Amino Acids

15.62

Weight (kDa)

9.47

Isoelectric Point (pI)

28.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11890
fragaria_vesca	FvH4_6g35230
malus_domestica	MD09G1177400.v1.1 MD17G1149000.v1.1
prunus_persica	Prupe.3G036800_v2.0.a1 Prupe.3G036800_v2.0.a1 Prupe.3G036800_v2.0.a1
pyrus_communis	pycom09g09560 pycom17g14280
rosa_chinensis	RchiOBHm_Chr2g0091761 RchiOBHm_Chr2g0146571
rosa_laevigata	RLG00000020208
rosa_multiflora	Rmu_sc0001986.1_g000029
rosa_roxburghii	Rroxscaffold_1G00025120 Rroxscaffold_2G00091680 Rroxscaffold_2G00100030
rosa_rugosa	Rorug02G0107300 Rorug02G0107300 Rorug02G0107400 Rorug02G0107500 Rorug02G0394800 Rorug02G0394800 Rorug02G0394900 Rorug02G0395000
rosa_samantha	Rh2AG451700 Rh2BG464500 Rh2CG438600 Rh2DG473500 Rh6AG134600
rosa_wichuraiana	Rw2G036900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	106, 301
AclWI	GGATC	1 cut(s)	229
AcuI	CTGAAG	1 cut(s)	362
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	3 cut(s)	86, 100, 286
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	5 cut(s)	39, 55, 117, 124, 220
AjnI	CCWGG	2 cut(s)	45, 87
AluBI	AGCT	2 cut(s)	376, 404
AluI	AGCT	2 cut(s)	376, 404
Alw26I	GTCTC	1 cut(s)	207
AlwI	GGATC	1 cut(s)	229
AlwNI	CAGNNNCTG	1 cut(s)	232
ApeKI	GCWGC	1 cut(s)	267
AsuHPI	GGTGA	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	279
BciT130I	CCWGG	2 cut(s)	47, 89
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	1 cut(s)	396
BfmI	CTRYAG	1 cut(s)	265
BisI	GCNGC	1 cut(s)	268
BlsI	GCNGC	1 cut(s)	269
Bme1390I	CCNGG	2 cut(s)	47, 89
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	2 cut(s)	47, 89
BpuEI	CTTGAG	1 cut(s)	392
BsaHI	GRCGYC	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse3DI	GCAATG	1 cut(s)	169
BseBI	CCWGG	2 cut(s)	47, 89
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMI	GCAATG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	234, 310
BspACI	CCGC	2 cut(s)	106, 301
BspCNI	CTCAG	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	249
BspMAI	CTGCAG	1 cut(s)	269
BspPI	GGATC	1 cut(s)	229
BspQI	GCTCTTC	1 cut(s)	394
BsrDI	GCAATG	1 cut(s)	169
BssMI	GATC	2 cut(s)	234, 310
BssNI	GRCGYC	1 cut(s)	183
Bst2UI	CCWGG	2 cut(s)	47, 89
Bst4CI	ACNGT	1 cut(s)	356
Bst6I	CTCTTC	1 cut(s)	394
BstACI	GRCGYC	1 cut(s)	183
BstDEI	CTNAG	1 cut(s)	102
BstKTI	GATC	2 cut(s)	237, 313
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	2 cut(s)	234, 310
BstMWI	GCNNNNNNNGC	1 cut(s)	254
BstNI	CCWGG	2 cut(s)	47, 89
BstSCI	CCNGG	2 cut(s)	45, 87
BstSFI	CTRYAG	1 cut(s)	265
BstV1I	GCAGC	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	361
CaiI	CAGNNNCTG	1 cut(s)	232
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	3 cut(s)	85, 99, 285
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	8 cut(s)	5, 45, 50, 230, 248, 270, 376, 404
CviKI_1	RGCY	8 cut(s)	5, 45, 50, 230, 248, 270, 376, 404
CviQI	GTAC	3 cut(s)	85, 99, 285
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	2 cut(s)	236, 312
DpnII	GATC	2 cut(s)	234, 310
Eam1104I	CTCTTC	1 cut(s)	394
EarI	CTCTTC	1 cut(s)	394
Eco24I	GRGCYC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	362
EcoRII	CCWGG	2 cut(s)	45, 87
EcoT38I	GRGCYC	1 cut(s)	250
FaeI	CATG	1 cut(s)	262
FaiI	YATR	5 cut(s)	65, 138, 204, 260, 337
FatI	CATG	1 cut(s)	258
Fnu4HI	GCNGC	1 cut(s)	268
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	1 cut(s)	268
FspBI	CTAG	1 cut(s)	396
GluI	GCNGC	1 cut(s)	268
HapII	CCGG	1 cut(s)	318
HgaI	GACGC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	1 cut(s)	262
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	2 cut(s)	220, 304
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	3 cut(s)	145, 352, 393
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	2 cut(s)	170, 308
Hpy8I	GTNNAC	3 cut(s)	145, 352, 393
Hpy99I	CGWCG	1 cut(s)	188
HpyCH4III	ACNGT	1 cut(s)	356
HpyCH4V	TGCA	3 cut(s)	162, 267, 296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	254
HpyF3I	CTNAG	1 cut(s)	102
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	234, 310
LguI	GCTCTTC	1 cut(s)	394
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	9 cut(s)	32, 59, 74, 101, 155, 212, 264, 331, 390
Lsp1109I	GCAGC	1 cut(s)	279
MaeI	CTAG	1 cut(s)	396
MalI	GATC	2 cut(s)	236, 312
MboI	GATC	2 cut(s)	234, 310
MboII	GAAGA	1 cut(s)	411
MfeI	CAATTG	1 cut(s)	272
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	5 cut(s)	12, 39, 80, 272, 364
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	2 cut(s)	41, 333
MspA1I	CMGCKG	1 cut(s)	106
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	2 cut(s)	47, 89
MunI	CAATTG	1 cut(s)	272
MvaI	CCWGG	2 cut(s)	47, 89
MwoI	GCNNNNNNNGC	1 cut(s)	254
NdeII	GATC	2 cut(s)	234, 310
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	249
PciSI	GCTCTTC	1 cut(s)	394
PfeI	GAWTC	2 cut(s)	220, 304
PkrI	GCNGC	1 cut(s)	269
Psp6I	CCWGG	2 cut(s)	45, 87
PspGI	CCWGG	2 cut(s)	45, 87
PspN4I	GGNNCC	1 cut(s)	249
PstI	CTGCAG	1 cut(s)	269
PstNI	CAGNNNCTG	1 cut(s)	232
RsaI	GTAC	3 cut(s)	86, 100, 286
RsaNI	GTAC	3 cut(s)	85, 99, 285
SapI	GCTCTTC	1 cut(s)	394
SatI	GCNGC	1 cut(s)	268
Sau3AI	GATC	2 cut(s)	234, 310
ScrFI	CCNGG	2 cut(s)	47, 89
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	3 cut(s)	378, 406, 413
SfcI	CTRYAG	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	5 cut(s)	12, 39, 80, 272, 364
SsiI	CCGC	2 cut(s)	106, 301
SspMI	CTAG	1 cut(s)	396
StyD4I	CCNGG	2 cut(s)	45, 87
TaaI	ACNGT	1 cut(s)	356
TaqI	TCGA	1 cut(s)	309
TasI	AATT	5 cut(s)	12, 39, 80, 272, 364
TatI	WGTACW	1 cut(s)	98
TfiI	GAWTC	2 cut(s)	220, 304
TscAI	CASTG	1 cut(s)	361
TseI	GCWGC	1 cut(s)	267
TspDTI	ATGAA	3 cut(s)	52, 144, 153
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	361
XspI	CTAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.