Rroxscaffold_1G00025120

Belongs to the synaptobrevin family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
31478818 .. 31481435
2618 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00025120.1

Sequence Viewer

Length: 411 bp
ATGCCACCAAATCTTGCTTCGATTCAATTAGCCAGGTATGTCCCTTTCTTGATGAGCTTTCAATTCAGTTCAATGATGTTTATGTTCTGTATTTCAATACCAAATAATACTGGTTTTCTTTTCTTTTCTGCATATGGATATGTGATCAATGGATGTATGACGCTGCAAGTTAATAATTTCGTCAGGCTTTCAGTAGGGAGCTTTAGCACCTGCAAGACCATATATGCTTTTATTAAATTAGATACATTCATACAGAGAACCAAGAAATTGTACCAAGACACTTGTACTCAGCGGACTATTTCAAAGTTGAATAATGAACTCTATGAAGTCCACCAAATAATGACTTGCAATGTTCAGGAAGTTCTTGGCGTCGGTGAAAAGTTGGACCGTAAGTTTTCTGTTTGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

15.68

Weight (kDa)

8.97

Isoelectric Point (pI)

18.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 218
Acc36I ACCTGC 1 cut(s) 218
AciI CCGC 1 cut(s) 292
AcyI GRCGYC 1 cut(s) 369
AfaI GTAC 2 cut(s) 272, 286
AgsI TTSAA 6 cut(s) 26, 62, 72, 96, 303, 310
AjnI CCWGG 1 cut(s) 32
AjuI GAANNNNNNNTTGG 1 cut(s) 33
AluBI AGCT 2 cut(s) 57, 201
AluI AGCT 2 cut(s) 57, 201
ApeKI GCWGC 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 385
AsuHPI GGTGA 1 cut(s) 386
AvaII GGWCC 1 cut(s) 385
BbvI GCAGC 1 cut(s) 150
BciT130I CCWGG 1 cut(s) 34
BclI TGATCA 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 218
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
Bme1390I CCNGG 1 cut(s) 34
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 385
BmrFI CCNGG 1 cut(s) 34
BsaHI GRCGYC 1 cut(s) 369
Bse1I ACTGG 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 355
BseBI CCWGG 1 cut(s) 34
BseGI GGATG 1 cut(s) 158
BseMI GCAATG 1 cut(s) 355
BseMII CTCAG 1 cut(s) 302
BseNI ACTGG 1 cut(s) 115
BseXI GCAGC 1 cut(s) 150
BslFI GGGAC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 26
Bsp143I GATC 1 cut(s) 144
BspACI CCGC 1 cut(s) 292
BspCNI CTCAG 1 cut(s) 301
BspMI ACCTGC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 355
BsrI ACTGG 1 cut(s) 115
BssMI GATC 1 cut(s) 144
BssNI GRCGYC 1 cut(s) 369
Bst2UI CCWGG 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 389
BstACI GRCGYC 1 cut(s) 369
BstDEI CTNAG 1 cut(s) 288
BstF5I GGATG 1 cut(s) 158
BstKTI GATC 1 cut(s) 147
BstMBI GATC 1 cut(s) 144
BstNI CCWGG 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 150
BtsCI GGATG 1 cut(s) 158
BveI ACCTGC 1 cut(s) 218
Cfr13I GGNCC 1 cut(s) 385
CseI GACGC 2 cut(s) 169, 358
Csp6I GTAC 2 cut(s) 271, 285
CviJI RGCY 4 cut(s) 32, 57, 187, 201
CviKI_1 RGCY 4 cut(s) 32, 57, 187, 201
CviQI GTAC 2 cut(s) 271, 285
DdeI CTNAG 1 cut(s) 288
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 385
EcoRII CCWGG 1 cut(s) 32
FaqI GGGAC 1 cut(s) 26
FauNDI CATATG 1 cut(s) 133
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 1 cut(s) 164
FokI GGATG 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 164
HgaI GACGC 2 cut(s) 169, 358
Hin1I GRCGYC 1 cut(s) 369
HinfI GANTC 1 cut(s) 22
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 1 cut(s) 331
Hpy188III TCNNGA 2 cut(s) 49, 356
Hpy8I GTNNAC 1 cut(s) 331
Hpy99I CGWCG 1 cut(s) 374
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4V TGCA 4 cut(s) 131, 166, 213, 348
HpyF3I CTNAG 1 cut(s) 288
Hsp92I GRCGYC 1 cut(s) 369
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 1 cut(s) 144
LmnI GCTCC 1 cut(s) 198
LpnPI CCDG 6 cut(s) 19, 46, 96, 169, 223, 341
Lsp1109I GCAGC 1 cut(s) 150
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MluCI AATT 5 cut(s) 26, 62, 175, 236, 266
MmeI TCCRAC 1 cut(s) 363
MseI TTAA 2 cut(s) 171, 234
MspA1I CMGCKG 1 cut(s) 292
MspR9I CCNGG 1 cut(s) 34
MvaI CCWGG 1 cut(s) 34
NdeI CATATG 1 cut(s) 133
NdeII GATC 1 cut(s) 144
PaqCI CACCTGC 1 cut(s) 218
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 32
PspGI CCWGG 1 cut(s) 32
PspPI GGNCC 1 cut(s) 385
RsaI GTAC 2 cut(s) 272, 286
RsaNI GTAC 2 cut(s) 271, 285
SaqAI TTAA 2 cut(s) 171, 234
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 1 cut(s) 144
Sau96I GGNCC 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 34
SetI ASST 4 cut(s) 38, 59, 203, 212
SinI GGWCC 1 cut(s) 385
Sse9I AATT 5 cut(s) 26, 62, 175, 236, 266
SsiI CCGC 1 cut(s) 292
StyD4I CCNGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 389
TaqI TCGA 1 cut(s) 20
TasI AATT 5 cut(s) 26, 62, 175, 236, 266
TatI WGTACW 1 cut(s) 284
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 2 cut(s) 171, 234
Tru9I TTAA 2 cut(s) 171, 234
TseI GCWGC 1 cut(s) 163
TspDTI ATGAA 3 cut(s) 238, 330, 339
VpaK11BI GGWCC 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.