Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004936

Physical Location & Seq

Genomic Coordinates Reverse (-)

11767858 .. 11768999

Gene Structure 1142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g14280.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGACTCGCAATGTTCAGGAAGTGCTTGGTGTTGGTGAAAAGTTGGACCAGGTTAGTCAAATGTCCAGCCGTTTAACATCAGAATCTCGTGTGTATGCTGATAAAGCAAGAGATTTGAATCGACAGGCTCTGATCCGAAAGTATGCACCTATTGCCATTGTGCTTGGAGTGGTTTTCCTCCTTTTCTGGGTCAAAACAAAGCTCTGGTCGATCAAACTGCCTTATCTATGTTCTGAATTTGTGACGATTTTGACGGGCTTCTGTTTGTTGCGGTGGACTGCTTCCATTCTATTTCAGACTTGGGAACTTCAGATTGGCTGCCTTATCCTCATGAAAGATTTAAATGATGTTTTGGGGTTACTTTTGTTGGTCACGCGGAGTTTGATTGAGAAAATTAATTCTGTAAGAACCTCTGCTTATGGGGACATATCCACCCTTATGAAAGAGAGACCCCTCAAAAGAACAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 ko05134 map04130 map04145 map05134

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

157

Amino Acids

17.85

Weight (kDa)

9.67

Isoelectric Point (pI)

40.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11890
fragaria_vesca	FvH4_6g35230
malus_domestica	MD09G1177400.v1.1 MD17G1149000.v1.1
prunus_persica	Prupe.3G036800_v2.0.a1 Prupe.3G036800_v2.0.a1 Prupe.3G036800_v2.0.a1
pyrus_communis	pycom09g09560 pycom17g14280
rosa_chinensis	RchiOBHm_Chr2g0091761 RchiOBHm_Chr2g0146571
rosa_laevigata	RLG00000020208
rosa_multiflora	Rmu_sc0001986.1_g000029
rosa_roxburghii	Rroxscaffold_1G00025120 Rroxscaffold_2G00091680 Rroxscaffold_2G00100030
rosa_rugosa	Rorug02G0107300 Rorug02G0107300 Rorug02G0107400 Rorug02G0107500 Rorug02G0394800 Rorug02G0394800 Rorug02G0394900 Rorug02G0395000
rosa_samantha	Rh2AG451700 Rh2BG464500 Rh2CG438600 Rh2DG473500 Rh6AG134600
rosa_wichuraiana	Rw2G036900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	376
AciI	CCGC	2 cut(s)	271, 376
AclWI	GGATC	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	236
AcuI	CTGAAG	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	187
AgsI	TTSAA	1 cut(s)	118
AjnI	CCWGG	1 cut(s)	48
AjuI	GAANNNNNNNTTGG	2 cut(s)	297, 329
AluBI	AGCT	1 cut(s)	202
AluI	AGCT	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	442
AlwI	GGATC	1 cut(s)	127
AlwNI	CAGNNNCTG	1 cut(s)	130
ApeKI	GCWGC	1 cut(s)	318
ApoI	RAATTY	1 cut(s)	236
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AseI	ATTAAT	1 cut(s)	396
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	46
BauI	CACGAG	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	305
BceAI	ACGGC	1 cut(s)	54
BcgI	CGANNNNNNTGC	2 cut(s)	199, 233
BciT130I	CCWGG	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	442
BisI	GCNGC	1 cut(s)	319
BlsI	GCNGC	1 cut(s)	320
Bme1390I	CCNGG	1 cut(s)	50
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse3DI	GCAATG	1 cut(s)	16
Bse8I	GATNNNNATC	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	50
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMI	GCAATG	1 cut(s)	16
BseXI	GCAGC	1 cut(s)	305
Bsh1236I	CGCG	1 cut(s)	376
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	1 cut(s)	442
BsmFI	GGGAC	1 cut(s)	437
Bso31I	GGTCTC	1 cut(s)	442
Bsp143I	GATC	2 cut(s)	132, 210
BspACI	CCGC	2 cut(s)	271, 376
BspFNI	CGCG	1 cut(s)	376
BspHI	TCATGA	1 cut(s)	330
BspPI	GGATC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	442
BsrDI	GCAATG	1 cut(s)	16
BssMI	GATC	2 cut(s)	132, 210
BssSI	CACGAG	1 cut(s)	87
Bst2BI	CACGAG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	50
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstFNI	CGCG	1 cut(s)	376
BstKTI	GATC	2 cut(s)	135, 213
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	2 cut(s)	132, 210
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 152
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstUI	CGCG	1 cut(s)	376
BstV1I	GCAGC	1 cut(s)	305
CaiI	CAGNNNCTG	1 cut(s)	130
CciI	TCATGA	1 cut(s)	330
Cfr13I	GGNCC	1 cut(s)	46
CsiI	ACCWGGT	1 cut(s)	48
CviAII	CATG	1 cut(s)	331
CviJI	RGCY	5 cut(s)	69, 128, 202, 258, 318
CviKI_1	RGCY	5 cut(s)	69, 128, 202, 258, 318
DpnI	GATC	2 cut(s)	134, 212
DpnII	GATC	2 cut(s)	132, 210
DraI	TTTAAA	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	442
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	48
FaeI	CATG	1 cut(s)	334
FaiI	YATR	7 cut(s)	96, 144, 229, 332, 420, 428, 440
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	1 cut(s)	330
Fnu4HI	GCNGC	1 cut(s)	319
Fsp4HI	GCNGC	1 cut(s)	319
GluI	GCNGC	1 cut(s)	319
Hin1II	CATG	1 cut(s)	334
HinfI	GANTC	3 cut(s)	4, 83, 118
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	276
Hpy188I	TCNGA	6 cut(s)	82, 132, 137, 235, 297, 312
Hpy188III	TCNNGA	2 cut(s)	17, 331
Hpy8I	GTNNAC	1 cut(s)	276
HpyCH4V	TGCA	1 cut(s)	146
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 152
Hsp92II	CATG	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	132, 210
LpnPI	CCDG	7 cut(s)	2, 35, 62, 79, 110, 172, 190
Lsp1109I	GCAGC	1 cut(s)	305
MabI	ACCWGGT	1 cut(s)	48
MaeIII	GTNAC	3 cut(s)	241, 357, 370
MalI	GATC	2 cut(s)	134, 212
MboI	GATC	2 cut(s)	132, 210
MluCI	AATT	4 cut(s)	236, 393, 397, 466
MmeI	TCCRAC	1 cut(s)	24
MnlI	CCTC	4 cut(s)	188, 338, 421, 464
MseI	TTAA	3 cut(s)	74, 341, 396
MslI	CAYNNNNRTG	1 cut(s)	437
MspR9I	CCNGG	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	376
MwoI	GCNNNNNNNGC	2 cut(s)	104, 152
NdeII	GATC	2 cut(s)	132, 210
NlaIII	CATG	1 cut(s)	334
NmuCI	GTSAC	2 cut(s)	241, 370
PagI	TCATGA	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	83, 118
PkrI	GCNGC	1 cut(s)	320
PshBI	ATTAAT	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	46
PstNI	CAGNNNCTG	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	437
SaqAI	TTAA	3 cut(s)	74, 341, 396
SatI	GCNGC	1 cut(s)	319
Sau3AI	GATC	2 cut(s)	132, 210
Sau96I	GGNCC	1 cut(s)	46
ScrFI	CCNGG	1 cut(s)	50
SetI	ASST	4 cut(s)	54, 151, 204, 413
SexAI	ACCWGGT	1 cut(s)	48
SinI	GGWCC	1 cut(s)	46
SmiI	ATTTAAAT	1 cut(s)	342
SmiMI	CAYNNNNRTG	1 cut(s)	437
Sse9I	AATT	4 cut(s)	236, 393, 397, 466
SsiI	CCGC	2 cut(s)	271, 376
StyD4I	CCNGG	1 cut(s)	48
SwaI	ATTTAAAT	1 cut(s)	342
TaqI	TCGA	2 cut(s)	121, 209
TasI	AATT	4 cut(s)	236, 393, 397, 466
TfiI	GAWTC	2 cut(s)	83, 118
Tru1I	TTAA	3 cut(s)	74, 341, 396
Tru9I	TTAA	3 cut(s)	74, 341, 396
TseFI	GTSAC	2 cut(s)	241, 370
TseI	GCWGC	1 cut(s)	318
Tsp45I	GTSAC	2 cut(s)	241, 370
TspDTI	ATGAA	2 cut(s)	347, 455
VpaK11BI	GGWCC	1 cut(s)	46
VspI	ATTAAT	1 cut(s)	396
XapI	RAATTY	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.