Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004936

Physical Location & Seq

Genomic Coordinates Forward (+)

50569609 .. 50570974

Gene Structure 1366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0394900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTATCATTCACTTCCGATGCGGTATAAGAGAGTTGTGGATCTTCATAACATGCTTGGAGGAGAGAATCATCATCATCTCCGTCAGCATCACCTTCGTTCTTCAATTTCTGAAGAAATGGAGCTGAAACCAGGTCTCTCAACTCTCGTCACCGACGGAGCTTCTGGAATTGGGCGCGACGGAACTGAATTCGTTGACGGCGATGTGTTGATTTTCCCGGATATGATCAAATACCGGGGCTTGAAAGAGTCAGATGTTGATAGCTTTGTGGATGATGTTATCGTGAATGATAAACCATGGGCATCTGGAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 ko05134 map04130 map04145 map05134

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

104

Amino Acids

11.69

Weight (kDa)

5.52

Isoelectric Point (pI)

22.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11890
fragaria_vesca	FvH4_6g35230
malus_domestica	MD09G1177400.v1.1 MD17G1149000.v1.1
prunus_persica	Prupe.3G036800_v2.0.a1 Prupe.3G036800_v2.0.a1 Prupe.3G036800_v2.0.a1
pyrus_communis	pycom09g09560 pycom17g14280
rosa_chinensis	RchiOBHm_Chr2g0091761 RchiOBHm_Chr2g0146571
rosa_laevigata	RLG00000020208
rosa_multiflora	Rmu_sc0001986.1_g000029
rosa_roxburghii	Rroxscaffold_1G00025120 Rroxscaffold_2G00091680 Rroxscaffold_2G00100030
rosa_rugosa	Rorug02G0107300 Rorug02G0107300 Rorug02G0107400 Rorug02G0107500 Rorug02G0394800 Rorug02G0394800 Rorug02G0394900 Rorug02G0395000
rosa_samantha	Rh2AG451700 Rh2BG464500 Rh2CG438600 Rh2DG473500 Rh6AG134600
rosa_wichuraiana	Rw2G036900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	177
AciI	CCGC	1 cut(s)	22
AclWI	GGATC	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	132
AgsI	TTSAA	2 cut(s)	105, 244
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	3 cut(s)	124, 161, 264
AluI	AGCT	3 cut(s)	124, 161, 264
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	48
ApoI	RAATTY	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	177
AsuC2I	CCSGG	2 cut(s)	218, 236
AsuHPI	GGTGA	2 cut(s)	83, 142
BceAI	ACGGC	1 cut(s)	214
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BciT130I	CCWGG	1 cut(s)	132
BclI	TGATCA	1 cut(s)	225
BcnI	CCSGG	2 cut(s)	218, 236
BcoDI	GTCTC	1 cut(s)	140
Bme1390I	CCNGG	3 cut(s)	132, 218, 236
BmrFI	CCNGG	3 cut(s)	132, 218, 236
BmsI	GCATC	3 cut(s)	9, 97, 311
BpuMI	CCSGG	2 cut(s)	218, 236
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	235, 296
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	235, 296
BseGI	GGATG	1 cut(s)	277
BseRI	GAGGAG	1 cut(s)	75
Bsh1236I	CGCG	1 cut(s)	177
BsiSI	CCGG	2 cut(s)	218, 235
BsmAI	GTCTC	1 cut(s)	140
Bso31I	GGTCTC	1 cut(s)	140
Bsp143I	GATC	2 cut(s)	40, 225
Bsp19I	CCATGG	1 cut(s)	296
BspACI	CCGC	1 cut(s)	22
BspFNI	CGCG	1 cut(s)	177
BspPI	GGATC	1 cut(s)	48
BspTNI	GGTCTC	1 cut(s)	140
BssECI	CCNNGG	2 cut(s)	235, 296
BssMI	GATC	2 cut(s)	40, 225
BssT1I	CCWWGG	1 cut(s)	296
Bst2UI	CCWGG	1 cut(s)	132
BstDSI	CCRYGG	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	277
BstFNI	CGCG	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	2 cut(s)	43, 228
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	2 cut(s)	40, 225
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	55
BstSCI	CCNGG	3 cut(s)	130, 216, 234
BstUI	CGCG	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BtgI	CCRYGG	1 cut(s)	296
BtgZI	GCGATG	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	277
CfoI	GCGC	1 cut(s)	177
CsiI	ACCWGGT	1 cut(s)	130
CviAII	CATG	2 cut(s)	52, 297
CviJI	RGCY	4 cut(s)	124, 161, 240, 264
CviKI_1	RGCY	4 cut(s)	124, 161, 240, 264
DpnI	GATC	2 cut(s)	42, 227
DpnII	GATC	2 cut(s)	40, 225
Eco130I	CCWWGG	1 cut(s)	296
Eco31I	GGTCTC	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	132
EcoRI	GAATTC	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	296
FaeI	CATG	2 cut(s)	55, 300
FaiI	YATR	6 cut(s)	27, 48, 53, 224, 298, 313
FatI	CATG	2 cut(s)	51, 296
FbaI	TGATCA	1 cut(s)	225
FokI	GGATG	1 cut(s)	284
GlaI	GCGC	1 cut(s)	176
HapII	CCGG	2 cut(s)	218, 235
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	55, 300
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	67, 248
HpaII	CCGG	2 cut(s)	218, 235
HphI	GGTGA	2 cut(s)	83, 142
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	3 cut(s)	18, 112, 253
Hpy188III	TCNNGA	3 cut(s)	165, 283, 306
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	2 cut(s)	158, 182
HpyAV	CCTTC	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
Hsp92II	CATG	2 cut(s)	55, 300
HspAI	GCGC	1 cut(s)	175
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	40, 225
LmnI	GCTCC	3 cut(s)	121, 158, 308
LpnPI	CCDG	6 cut(s)	117, 144, 150, 231, 248, 291
LweI	GCATC	3 cut(s)	9, 97, 311
MabI	ACCWGGT	1 cut(s)	130
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	2 cut(s)	42, 227
MboI	GATC	2 cut(s)	40, 225
MboII	GAAGA	3 cut(s)	35, 93, 125
MflI	RGATCY	1 cut(s)	40
MluCI	AATT	3 cut(s)	105, 168, 188
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	1 cut(s)	53
MspI	CCGG	2 cut(s)	218, 235
MspR9I	CCNGG	3 cut(s)	132, 218, 236
MvaI	CCWGG	1 cut(s)	132
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	308
NciI	CCSGG	2 cut(s)	218, 236
NcoI	CCATGG	1 cut(s)	296
NdeII	GATC	2 cut(s)	40, 225
NlaIII	CATG	2 cut(s)	55, 300
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	67
PfoI	TCCNGGA	1 cut(s)	216
PleI	GAGTC	1 cut(s)	256
PpsI	GAGTC	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	40
Sau3AI	GATC	2 cut(s)	40, 225
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	3 cut(s)	132, 218, 236
SetI	ASST	5 cut(s)	96, 126, 136, 163, 266
SexAI	ACCWGGT	1 cut(s)	130
SfaNI	GCATC	3 cut(s)	9, 97, 311
Sse9I	AATT	3 cut(s)	105, 168, 188
SsiI	CCGC	1 cut(s)	22
StyD4I	CCNGG	3 cut(s)	130, 216, 234
StyI	CCWWGG	1 cut(s)	296
TasI	AATT	3 cut(s)	105, 168, 188
TfiI	GAWTC	1 cut(s)	67
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	35
TspGWI	ACGGA	3 cut(s)	71, 171, 195
XapI	RAATTY	1 cut(s)	188
XceI	RCATGY	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.