Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004936

Physical Location & Seq

Genomic Coordinates Forward (+)

13200468 .. 13203102

Gene Structure 2635 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00091680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCCACCAAATCTTGCTTCGATTCAATTATCCAGGTATGTCCCTTTCTTGATGAGCTTTCAATTCAGTTCAATGATGTTTATGTTCTGTATTTCAATACCAAATAATACTGGTTTTCTTTTCTTTTCTGCATATGGATATGTGATCAATGGATGTATGTCGCTGCAAGTTAATAATTTCGTCAGGCTTTCGGTAGGGAGCTTTAGCACCTGCAAGACGATATATGCTTTTATTAAATTAGATACATTCATACAGAGAACCAAGAAATTGTACCAGGACACTTGTACTCAGCGGACTATTTCAAAGTTGAATAATGAACTCTATGAAGTCCACCAAATAATGACTTGCAATGTTCAGGAAGTTCTTGGCGTCGGTGAAAAGTTGAACCAGGTCAGCCAAATGTCTAATCGTTTAACATCAAAGTCTTGTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 ko05134 map04130 map04145 map05134

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

144

Amino Acids

16.43

Weight (kDa)

9.13

Isoelectric Point (pI)

28.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Synaptobrevin	PF00957	100 - 142	8.1e-08	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11890
fragaria_vesca	FvH4_6g35230
malus_domestica	MD09G1177400.v1.1 MD17G1149000.v1.1
prunus_persica	Prupe.3G036800_v2.0.a1 Prupe.3G036800_v2.0.a1 Prupe.3G036800_v2.0.a1
pyrus_communis	pycom09g09560 pycom17g14280
rosa_chinensis	RchiOBHm_Chr2g0091761 RchiOBHm_Chr2g0146571
rosa_laevigata	RLG00000020208
rosa_multiflora	Rmu_sc0001986.1_g000029
rosa_roxburghii	Rroxscaffold_1G00025120 Rroxscaffold_2G00091680 Rroxscaffold_2G00100030
rosa_rugosa	Rorug02G0107300 Rorug02G0107300 Rorug02G0107400 Rorug02G0107500 Rorug02G0394800 Rorug02G0394800 Rorug02G0394900 Rorug02G0395000
rosa_samantha	Rh2AG451700 Rh2BG464500 Rh2CG438600 Rh2DG473500 Rh6AG134600
rosa_wichuraiana	Rw2G036900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	218
Acc36I	ACCTGC	1 cut(s)	218
AciI	CCGC	1 cut(s)	292
AcyI	GRCGYC	1 cut(s)	369
AfaI	GTAC	2 cut(s)	272, 286
AgsI	TTSAA	7 cut(s)	26, 62, 72, 96, 303, 310, 385
AjnI	CCWGG	3 cut(s)	32, 273, 387
AjuI	GAANNNNNNNTTGG	1 cut(s)	33
AluBI	AGCT	2 cut(s)	57, 201
AluI	AGCT	2 cut(s)	57, 201
ApeKI	GCWGC	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	386
BbvI	GCAGC	1 cut(s)	150
BciT130I	CCWGG	3 cut(s)	34, 275, 389
BclI	TGATCA	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	218
BisI	GCNGC	1 cut(s)	164
BlsI	GCNGC	1 cut(s)	165
Bme1390I	CCNGG	3 cut(s)	34, 275, 389
BmrFI	CCNGG	3 cut(s)	34, 275, 389
BsaHI	GRCGYC	1 cut(s)	369
Bse1I	ACTGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	355
BseBI	CCWGG	3 cut(s)	34, 275, 389
BseGI	GGATG	1 cut(s)	158
BseMI	GCAATG	1 cut(s)	355
BseMII	CTCAG	1 cut(s)	302
BseNI	ACTGG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	26
Bsp143I	GATC	1 cut(s)	144
BspACI	CCGC	1 cut(s)	292
BspCNI	CTCAG	1 cut(s)	301
BspMI	ACCTGC	1 cut(s)	218
BsrDI	GCAATG	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	115
BssMI	GATC	1 cut(s)	144
BssNI	GRCGYC	1 cut(s)	369
Bst2UI	CCWGG	3 cut(s)	34, 275, 389
BstACI	GRCGYC	1 cut(s)	369
BstDEI	CTNAG	1 cut(s)	288
BstF5I	GGATG	1 cut(s)	158
BstKTI	GATC	1 cut(s)	147
BstMBI	GATC	1 cut(s)	144
BstNI	CCWGG	3 cut(s)	34, 275, 389
BstSCI	CCNGG	3 cut(s)	32, 273, 387
BstV1I	GCAGC	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	158
BveI	ACCTGC	1 cut(s)	218
CseI	GACGC	1 cut(s)	358
CsiI	ACCWGGT	1 cut(s)	387
Csp6I	GTAC	2 cut(s)	271, 285
CviJI	RGCY	4 cut(s)	57, 187, 201, 396
CviKI_1	RGCY	4 cut(s)	57, 187, 201, 396
CviQI	GTAC	2 cut(s)	271, 285
DdeI	CTNAG	1 cut(s)	288
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
EcoRII	CCWGG	3 cut(s)	32, 273, 387
FaqI	GGGAC	1 cut(s)	26
FauNDI	CATATG	1 cut(s)	133
FbaI	TGATCA	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	164
FokI	GGATG	1 cut(s)	165
Fsp4HI	GCNGC	1 cut(s)	164
GluI	GCNGC	1 cut(s)	164
HgaI	GACGC	1 cut(s)	358
Hin1I	GRCGYC	1 cut(s)	369
HinfI	GANTC	1 cut(s)	22
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188III	TCNNGA	2 cut(s)	49, 356
Hpy8I	GTNNAC	1 cut(s)	331
Hpy99I	CGWCG	1 cut(s)	374
HpyCH4V	TGCA	5 cut(s)	131, 166, 213, 348, 431
HpyF3I	CTNAG	1 cut(s)	288
Hsp92I	GRCGYC	1 cut(s)	369
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	198
Lsp1109I	GCAGC	1 cut(s)	150
MabI	ACCWGGT	1 cut(s)	387
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MluCI	AATT	5 cut(s)	26, 62, 175, 236, 266
MseI	TTAA	3 cut(s)	171, 234, 413
MspA1I	CMGCKG	1 cut(s)	292
MspR9I	CCNGG	3 cut(s)	34, 275, 389
MvaI	CCWGG	3 cut(s)	34, 275, 389
NdeI	CATATG	1 cut(s)	133
NdeII	GATC	1 cut(s)	144
PaqCI	CACCTGC	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	22
PkrI	GCNGC	1 cut(s)	165
Psp6I	CCWGG	3 cut(s)	32, 273, 387
PspGI	CCWGG	3 cut(s)	32, 273, 387
RsaI	GTAC	2 cut(s)	272, 286
RsaNI	GTAC	2 cut(s)	271, 285
SaqAI	TTAA	3 cut(s)	171, 234, 413
SatI	GCNGC	1 cut(s)	164
Sau3AI	GATC	1 cut(s)	144
ScrFI	CCNGG	3 cut(s)	34, 275, 389
SetI	ASST	5 cut(s)	38, 59, 203, 212, 393
SexAI	ACCWGGT	1 cut(s)	387
Sse9I	AATT	5 cut(s)	26, 62, 175, 236, 266
SsiI	CCGC	1 cut(s)	292
StyD4I	CCNGG	3 cut(s)	32, 273, 387
TaqI	TCGA	1 cut(s)	20
TasI	AATT	5 cut(s)	26, 62, 175, 236, 266
TatI	WGTACW	1 cut(s)	284
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	3 cut(s)	171, 234, 413
Tru9I	TTAA	3 cut(s)	171, 234, 413
TseI	GCWGC	1 cut(s)	163
TspDTI	ATGAA	3 cut(s)	238, 330, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.