Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0004936

Physical Location & Seq

Genomic Coordinates Reverse (-)

59576180 .. 59579686

Gene Structure 3507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG438600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGTGAAGCTGACGATGATTGCTCGTGTTACTGATGGTCTTCCACTAGCAGAGGGACTGGATGATGGCCGTGATATTAAGGATTCGGAATTCTACAAACAACAAGTCAAGGCTCTATTCAAGAACTTGTCAAGAGGCCAAAATGAGCCTTCAAGGATGTCAGTCGAAAGTGGACCTTATATATTCCATTATATCATTGAAGGACGTGTCTGTTACTTGACAATGTGTGACCGAGCCTATCCAAAGAAACTTGCCTTTCAGTATCTCGAAGATCTCAGGAATGAATTTGAGCGTGTTAATGGAGCCCAGATTGAAACTGCTGCAAGACCATATGCTTTCATTAAATTCGATACATTCATACAGAAAACCAAGAAATTGTACCAGGACACTCGTACTCAGCGGAATATTTCAAAGTTGAATGATGAACTCTATGAAGTCCACCAAATAATGACTCGCAATGTTCAGGAAGTTCTTGGCGTCGGTGAAAAGTTGGACCGTAAGTTATTTCTGTTTGCTTCTAAATGGAAGGTTTTGGCTTGTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 ko05134 map04130 map04145 map05134

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

181

Amino Acids

21.15

Weight (kDa)

9.03

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	37 - 118	5.2e-26	Regulated-SNARE-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11890
fragaria_vesca	FvH4_6g35230
malus_domestica	MD09G1177400.v1.1 MD17G1149000.v1.1
prunus_persica	Prupe.3G036800_v2.0.a1 Prupe.3G036800_v2.0.a1 Prupe.3G036800_v2.0.a1
pyrus_communis	pycom09g09560 pycom17g14280
rosa_chinensis	RchiOBHm_Chr2g0091761 RchiOBHm_Chr2g0146571
rosa_laevigata	RLG00000020208
rosa_multiflora	Rmu_sc0001986.1_g000029
rosa_roxburghii	Rroxscaffold_1G00025120 Rroxscaffold_2G00091680 Rroxscaffold_2G00100030
rosa_rugosa	Rorug02G0107300 Rorug02G0107300 Rorug02G0107400 Rorug02G0107500 Rorug02G0394800 Rorug02G0394800 Rorug02G0394900 Rorug02G0395000
rosa_samantha	Rh2AG451700 Rh2BG464500 Rh2CG438600 Rh2DG473500 Rh6AG134600
rosa_wichuraiana	Rw2G036900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	400
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	3 cut(s)	89, 284, 344
AcyI	GRCGYC	1 cut(s)	477
AfaI	GTAC	2 cut(s)	380, 394
AflIII	ACRYGT	1 cut(s)	205
AgsI	TTSAA	6 cut(s)	121, 153, 200, 314, 411, 418
AjiI	CACGTC	1 cut(s)	206
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
AoxI	GGCC	2 cut(s)	67, 136
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	3 cut(s)	89, 284, 344
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
AspS9I	GGNCC	2 cut(s)	173, 493
AsuHPI	GGTGA	2 cut(s)	16, 494
AvaII	GGWCC	2 cut(s)	173, 493
BanII	GRGCYC	1 cut(s)	307
BauI	CACGAG	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	2 cut(s)	29, 59
BceAI	ACGGC	1 cut(s)	54
BciT130I	CCWGG	1 cut(s)	383
BfaI	CTAG	1 cut(s)	47
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	1 cut(s)	383
Bme18I	GGWCC	2 cut(s)	173, 493
BmgBI	CACGTC	1 cut(s)	206
BmgT120I	GGNCC	2 cut(s)	173, 493
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	1 cut(s)	383
BpiI	GAAGAC	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	477
Bse1I	ACTGG	1 cut(s)	63
Bse3DI	GCAATG	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	383
BseGI	GGATG	2 cut(s)	67, 162
BseMI	GCAATG	1 cut(s)	463
BseMII	CTCAG	2 cut(s)	289, 410
BseNI	ACTGG	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	307
BshFI	GGCC	2 cut(s)	69, 138
BslFI	GGGAC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	69
BsnI	GGCC	2 cut(s)	69, 138
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	1 cut(s)	400
BspANI	GGCC	2 cut(s)	69, 138
BspCNI	CTCAG	2 cut(s)	288, 409
BspLI	GGNNCC	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	463
BsrI	ACTGG	1 cut(s)	63
BssMI	GATC	1 cut(s)	271
BssNI	GRCGYC	1 cut(s)	477
BssSI	CACGAG	1 cut(s)	24
Bst2BI	CACGAG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	1 cut(s)	497
BstACI	GRCGYC	1 cut(s)	477
BstDEI	CTNAG	2 cut(s)	275, 396
BstF5I	GGATG	2 cut(s)	67, 162
BstKTI	GATC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	271
BstNI	CCWGG	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	307
BstV2I	GAAGAC	1 cut(s)	32
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	69, 138
BtrI	CACGTC	1 cut(s)	206
BtsCI	GGATG	2 cut(s)	67, 162
Cfr13I	GGNCC	2 cut(s)	173, 493
CseI	GACGC	1 cut(s)	466
Csp6I	GTAC	2 cut(s)	379, 393
CviJI	RGCY	8 cut(s)	10, 69, 113, 138, 148, 236, 305, 536
CviKI_1	RGCY	8 cut(s)	10, 69, 113, 138, 148, 236, 305, 536
CviQI	GTAC	2 cut(s)	379, 393
DdeI	CTNAG	2 cut(s)	275, 396
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
EaeI	YGGCCR	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	307
Eco47I	GGWCC	2 cut(s)	173, 493
EcoRI	GAATTC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	307
FaiI	YATR	8 cut(s)	180, 182, 192, 331, 333, 359, 432, 544
FalI	AAGNNNNNCTT	2 cut(s)	160, 192
FaqI	GGGAC	1 cut(s)	69
FauNDI	CATATG	1 cut(s)	331
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	2 cut(s)	74, 169
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	1 cut(s)	321
HaeIII	GGCC	2 cut(s)	69, 138
HgaI	GACGC	1 cut(s)	466
Hin1I	GRCGYC	1 cut(s)	477
HinfI	GANTC	2 cut(s)	83, 451
HphI	GGTGA	2 cut(s)	16, 494
Hpy166II	GTNNAC	2 cut(s)	173, 439
Hpy188I	TCNGA	1 cut(s)	88
Hpy188III	TCNNGA	5 cut(s)	121, 132, 266, 277, 464
Hpy8I	GTNNAC	2 cut(s)	173, 439
Hpy99I	CGWCG	1 cut(s)	482
HpyAV	CCTTC	3 cut(s)	159, 194, 520
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	1 cut(s)	323
HpyF3I	CTNAG	2 cut(s)	275, 396
HpySE526I	ACGT	1 cut(s)	205
Hsp92I	GRCGYC	1 cut(s)	477
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	1 cut(s)	302
LpnPI	CCDG	6 cut(s)	44, 262, 320, 368, 395, 449
Lsp1109I	GCAGC	1 cut(s)	307
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	3 cut(s)	28, 212, 227
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	2 cut(s)	32, 281
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	4 cut(s)	89, 284, 344, 374
MlyI	GAGTC	1 cut(s)	445
MmeI	TCCRAC	1 cut(s)	471
MnlI	CCTC	2 cut(s)	46, 128
MseI	TTAA	3 cut(s)	78, 297, 342
MspA1I	CMGCKG	1 cut(s)	400
MspR9I	CCNGG	1 cut(s)	383
MvaI	CCWGG	1 cut(s)	383
NdeI	CATATG	1 cut(s)	331
NdeII	GATC	1 cut(s)	271
NlaIV	GGNNCC	1 cut(s)	304
NmuCI	GTSAC	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	304
PspPI	GGNCC	2 cut(s)	173, 493
PsuI	RGATCY	1 cut(s)	271
RsaI	GTAC	2 cut(s)	380, 394
RsaNI	GTAC	2 cut(s)	379, 393
SaqAI	TTAA	3 cut(s)	78, 297, 342
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	1 cut(s)	271
Sau96I	GGNCC	2 cut(s)	173, 493
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	1 cut(s)	383
SduI	GDGCHC	1 cut(s)	307
SetI	ASST	4 cut(s)	12, 178, 208, 531
SinI	GGWCC	2 cut(s)	173, 493
Sse9I	AATT	4 cut(s)	89, 284, 344, 374
SsiI	CCGC	1 cut(s)	400
SspI	AATATT	1 cut(s)	406
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	381
TaaI	ACNGT	1 cut(s)	497
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	3 cut(s)	165, 267, 348
TaqII	GACCGA	1 cut(s)	246
TasI	AATT	4 cut(s)	89, 284, 344, 374
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	3 cut(s)	78, 297, 342
Tru9I	TTAA	3 cut(s)	78, 297, 342
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	5 cut(s)	297, 328, 346, 438, 447
VpaK11BI	GGWCC	2 cut(s)	173, 493
XapI	RAATTY	3 cut(s)	89, 284, 344
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.