Rorug02G0107500

Belongs to the synaptobrevin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004936
Physical Location & Seq
Reverse (-)
9165171 .. 9166359
1189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0107500.1

Sequence Viewer

Length: 711 bp
ATGCCTCGCTCCCAGAGATTTCTCACCACAGCAAACTCAACGATGAAGTACGCCGCCGCTCCGCCTCCTGAGGCCGTGACCTTGGAATCCGACTTTGTTGTTATCCTGGCGGCTCTTTTATGCGCCGTCATATGCGTCGTGGGCCTGCTCGCCGTGGCGCGCTGCGCCTGGCTGCGACGCGCGCCAGGCGGGGGCCGGGCCGGTGAACCCGGCTCCGCACAGGCCTCTTCTGCCAACAAGGGGCTGAAAAAGAAGGTCCTGCAGCAGCTCCCCAAGTTCATCTACGGCGACGGCGGACCGTCGGCGCCGCCGCCGAAGATGGGGTCGGAGTGCGCCATATGCCTCGGCGAGTTCGCGGAGGGCGACGAGATCAGGGTTCTGCCGCAGTGCGGGCATGTTTTCCACGTCGGATGCATCGACACGTGGCTCGGGTCCCACTCGTCGTGTCCGTCGTGTCGGCAGATCCTGGTGGTGGCGCGGTGTCACAAGTGCGGCAACTTCCCCGCCATTTCTGACGCTGAGCTCAAAATTCGGCAAGATCATATTTACCATTCTGCCCCTGCTGCCCCTCCGCCACTCGCCTTGGCCGCCGCCGCTCATTCTGCTTCCGCCGCTGCCACAACTACTAGTTGTAGTAGCAGCAGCAGTAATAGTAATAGTAATAGTAATAGTAATAGTAATAGTAAGAGTAATAATATTTTCTTACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04130 ko04145 ko05134 map04130 map04145 map05134
Pfam Domains
Protein Families
Longin Synaptobrevin

Protein Analysis

236

Amino Acids

24.47

Weight (kDa)

8.75

Isoelectric Point (pI)

61.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 110 - 153 6.8e-16 Ring finger domain
zf-RING_11 PF17123 110 - 139 1.3e-12 RING-like zinc finger
zf-C3HC4_2 PF13923 110 - 152 3.7e-10 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 110 - 154 1e-06 zinc-RING finger domain
zf-C3HC4 PF00097 111 - 152 5.6e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 111 - 150 1.1e-06 RING-type zinc-finger
zf-rbx1 PF12678 119 - 153 2.8e-07 RING-H2 zinc finger domain
zf-ANAPC11 PF12861 121 - 159 4.3e-06 Anaphase-promoting complex subunit 11 RING-H2 finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 304
AccBSI CCGCTC 2 cut(s) 59, 596
AccII CGCG 5 cut(s) 160, 180, 182, 356, 478
AclWI GGATC 1 cut(s) 457
AcoI YGGCCR 1 cut(s) 585
AcsI RAATTY 1 cut(s) 528
AcvI CACGTG 1 cut(s) 423
AcyI GRCGYC 1 cut(s) 305
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 5 cut(s) 191, 240, 320, 389, 472
AflIII ACRYGT 1 cut(s) 420
AhlI ACTAGT 1 cut(s) 626
AjiI CACGTC 1 cut(s) 406
AjnI CCWGG 4 cut(s) 105, 167, 184, 465
AluBI AGCT 2 cut(s) 268, 523
AluI AGCT 2 cut(s) 268, 523
Alw21I GWGCWC 1 cut(s) 525
AlwI GGATC 1 cut(s) 457
AlwNI CAGNNNCTG 1 cut(s) 466
Ama87I CYCGRG 1 cut(s) 428
AoxI GGCC 6 cut(s) 72, 142, 193, 198, 222, 585
ApeKI GCWGC 8 cut(s) 162, 172, 262, 265, 563, 614, 639, 642
ApoI RAATTY 1 cut(s) 528
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
AspLEI GCGC 9 cut(s) 125, 160, 162, 167, 182, 184, 307, 335, 478
AspS9I GGNCC 6 cut(s) 142, 193, 198, 256, 296, 432
AsuC2I CCSGG 2 cut(s) 197, 210
AsuHPI GGTGA 2 cut(s) 16, 215
AvaI CYCGRG 1 cut(s) 428
AvaII GGWCC 3 cut(s) 256, 296, 432
AxyI CCTNAGG 1 cut(s) 69
BanI GGYRCC 1 cut(s) 304
BanII GRGCYC 1 cut(s) 525
BbrPI CACGTG 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 525
BbvI GCAGC 8 cut(s) 149, 159, 274, 277, 550, 601, 651, 654
BccI CCATC 1 cut(s) 313
BceAI ACGGC 5 cut(s) 59, 110, 137, 301, 307
BciT130I CCWGG 4 cut(s) 107, 169, 186, 467
BcnI CCSGG 2 cut(s) 197, 210
BcuI ACTAGT 1 cut(s) 626
BfaI CTAG 1 cut(s) 627
BfmI CTRYAG 1 cut(s) 260
BfoI RGCGCY 1 cut(s) 308
BlpI GCTNAGC 1 cut(s) 519
Bme1390I CCNGG 6 cut(s) 107, 169, 186, 197, 210, 467
Bme18I GGWCC 3 cut(s) 256, 296, 432
BmeT110I CYCGRG 1 cut(s) 428
BmgBI CACGTC 1 cut(s) 406
BmgT120I GGNCC 6 cut(s) 142, 193, 198, 256, 296, 432
BmiI GGNNCC 5 cut(s) 194, 214, 306, 433, 434
BmrFI CCNGG 6 cut(s) 107, 169, 186, 197, 210, 467
BmsI GCATC 2 cut(s) 401, 423
Bpu1102I GCTNAGC 1 cut(s) 519
BpuMI CCSGG 2 cut(s) 197, 210
BsaAI YACGTR 1 cut(s) 423
BsaHI GRCGYC 1 cut(s) 305
BsaJI CCNNGG 4 cut(s) 81, 153, 343, 582
Bsc4I CCNNNNNNNGG 5 cut(s) 191, 240, 320, 389, 472
Bse118I RCCGGY 1 cut(s) 200
Bse21I CCTNAGG 1 cut(s) 69
BseBI CCWGG 4 cut(s) 107, 169, 186, 467
BseDI CCNNGG 4 cut(s) 81, 153, 343, 582
BseGI GGATG 1 cut(s) 416
BseLI CCNNNNNNNGG 5 cut(s) 191, 240, 320, 389, 472
BseMII CTCAG 2 cut(s) 60, 510
BsePI GCGCGC 2 cut(s) 158, 180
BseXI GCAGC 8 cut(s) 149, 159, 274, 277, 550, 601, 651, 654
Bsh1236I CGCG 5 cut(s) 160, 180, 182, 356, 478
BshFI GGCC 6 cut(s) 74, 144, 195, 200, 224, 587
BshNI GGYRCC 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 525
BsiHKCI CYCGRG 1 cut(s) 428
BsiSI CCGG 3 cut(s) 196, 201, 210
BslFI GGGAC 1 cut(s) 418
BslI CCNNNNNNNGG 5 cut(s) 191, 240, 320, 389, 472
BsmFI GGGAC 1 cut(s) 418
BsnI GGCC 6 cut(s) 74, 144, 195, 200, 224, 587
BsoBI CYCGRG 1 cut(s) 428
Bsp1286I GDGCHC 1 cut(s) 525
Bsp143I GATC 3 cut(s) 369, 462, 538
Bsp1720I GCTNAGC 1 cut(s) 519
BspANI GGCC 6 cut(s) 74, 144, 195, 200, 224, 587
BspCNI CTCAG 2 cut(s) 61, 511
BspFNI CGCG 5 cut(s) 160, 180, 182, 356, 478
BspLI GGNNCC 5 cut(s) 194, 214, 306, 433, 434
BspMAI CTGCAG 1 cut(s) 264
BspPI GGATC 1 cut(s) 457
BspT107I GGYRCC 1 cut(s) 304
BsrBI CCGCTC 2 cut(s) 59, 596
BsrFI RCCGGY 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 4 cut(s) 81, 153, 343, 582
BssHII GCGCGC 2 cut(s) 158, 180
BssMI GATC 3 cut(s) 369, 462, 538
BssNI GRCGYC 1 cut(s) 305
BssT1I CCWWGG 2 cut(s) 81, 582
Bst2UI CCWGG 4 cut(s) 107, 169, 186, 467
Bst4CI ACNGT 1 cut(s) 300
Bst6I CTCTTC 1 cut(s) 232
BstACI GRCGYC 1 cut(s) 305
BstBAI YACGTR 1 cut(s) 423
BstC8I GCNNGC 5 cut(s) 146, 150, 160, 182, 392
BstDEI CTNAG 2 cut(s) 69, 519
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 416
BstFNI CGCG 5 cut(s) 160, 180, 182, 356, 478
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 9 cut(s) 125, 160, 162, 167, 182, 184, 307, 335, 478
BstKTI GATC 3 cut(s) 372, 465, 541
BstMBI GATC 3 cut(s) 369, 462, 538
BstNI CCWGG 4 cut(s) 107, 169, 186, 467
BstNSI RCATGY 1 cut(s) 398
BstSCI CCNGG 6 cut(s) 105, 167, 184, 195, 208, 465
BstSFI CTRYAG 1 cut(s) 260
BstUI CGCG 5 cut(s) 160, 180, 182, 356, 478
BstV1I GCAGC 8 cut(s) 149, 159, 274, 277, 550, 601, 651, 654
BstX2I RGATCY 1 cut(s) 462
BstYI RGATCY 1 cut(s) 462
Bsu36I CCTNAGG 1 cut(s) 69
BsuRI GGCC 6 cut(s) 74, 144, 195, 200, 224, 587
BtgI CCRYGG 1 cut(s) 153
BtrI CACGTC 1 cut(s) 406
BtsCI GGATG 1 cut(s) 416
BtsI GCAGTG 1 cut(s) 392
BtsIMutI CAGTG 1 cut(s) 392
Cac8I GCNNGC 5 cut(s) 146, 150, 160, 182, 392
CaiI CAGNNNCTG 1 cut(s) 466
CfoI GCGC 9 cut(s) 125, 160, 162, 167, 182, 184, 307, 335, 478
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 6 cut(s) 142, 193, 198, 256, 296, 432
CpoI CGGWCCG 1 cut(s) 296
CseI GACGC 3 cut(s) 124, 186, 524
Csp6I GTAC 1 cut(s) 49
CspCI CAANNNNNGTGG 2 cut(s) 564, 599
CspI CGGWCCG 1 cut(s) 296
CviAII CATG 1 cut(s) 395
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 2 cut(s) 69, 519
DinI GGCGCC 1 cut(s) 306
DpnI GATC 3 cut(s) 371, 464, 540
DpnII GATC 3 cut(s) 369, 462, 538
EaeI YGGCCR 1 cut(s) 585
Eam1104I CTCTTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 232
EciI GGCGGA 4 cut(s) 51, 309, 561, 598
Ecl136II GAGCTC 1 cut(s) 523
Eco130I CCWWGG 2 cut(s) 81, 582
Eco147I AGGCCT 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 525
Eco47I GGWCC 3 cut(s) 256, 296, 432
Eco53kI GAGCTC 1 cut(s) 523
Eco72I CACGTG 1 cut(s) 423
Eco81I CCTNAGG 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 428
EcoICRI GAGCTC 1 cut(s) 523
EcoO109I RGGNCCY 2 cut(s) 256, 432
EcoRII CCWGG 4 cut(s) 105, 167, 184, 465
EcoT14I CCWWGG 2 cut(s) 81, 582
EcoT22I ATGCAT 1 cut(s) 416
EcoT38I GRGCYC 1 cut(s) 525
EgeI GGCGCC 1 cut(s) 306
EheI GGCGCC 1 cut(s) 306
ErhI CCWWGG 2 cut(s) 81, 582
FaeI CATG 1 cut(s) 398
FaiI YATR 7 cut(s) 121, 131, 133, 338, 340, 396, 543
FaqI GGGAC 1 cut(s) 418
FatI CATG 1 cut(s) 394
FauI CCCGC 3 cut(s) 182, 383, 511
FauNDI CATATG 2 cut(s) 131, 338
FokI GGATG 1 cut(s) 423
FriOI GRGCYC 1 cut(s) 525
FspBI CTAG 1 cut(s) 627
GlaI GCGC 9 cut(s) 124, 159, 161, 166, 181, 183, 306, 334, 477
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 6 cut(s) 74, 144, 195, 200, 224, 587
HapII CCGG 3 cut(s) 196, 201, 210
HgaI GACGC 3 cut(s) 124, 186, 524
HhaI GCGC 9 cut(s) 125, 160, 162, 167, 182, 184, 307, 335, 478
Hin1I GRCGYC 1 cut(s) 305
Hin1II CATG 1 cut(s) 398
Hin6I GCGC 9 cut(s) 123, 158, 160, 165, 180, 182, 305, 333, 476
HinP1I GCGC 9 cut(s) 123, 158, 160, 165, 180, 182, 305, 333, 476
HinfI GANTC 1 cut(s) 86
HpaII CCGG 3 cut(s) 196, 201, 210
HphI GGTGA 2 cut(s) 16, 215
Hpy166II GTNNAC 1 cut(s) 206
Hpy188I TCNGA 4 cut(s) 91, 328, 410, 514
Hpy188III TCNNGA 1 cut(s) 68
Hpy8I GTNNAC 1 cut(s) 206
Hpy99I CGWCG 8 cut(s) 140, 180, 293, 304, 368, 410, 445, 454
HpyAV CCTTC 1 cut(s) 247
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4IV ACGT 2 cut(s) 405, 422
HpyCH4V TGCA 2 cut(s) 262, 414
HpyF3I CTNAG 2 cut(s) 69, 519
HpySE526I ACGT 2 cut(s) 405, 422
Hsp92I GRCGYC 1 cut(s) 305
Hsp92II CATG 1 cut(s) 398
HspAI GCGC 9 cut(s) 123, 158, 160, 165, 180, 182, 305, 333, 476
KasI GGCGCC 1 cut(s) 304
KflI GGGWCCC 1 cut(s) 432
Kzo9I GATC 3 cut(s) 369, 462, 538
LmnI GCTCC 4 cut(s) 14, 64, 218, 273
Lsp1109I GCAGC 8 cut(s) 149, 159, 274, 277, 550, 601, 651, 654
LweI GCATC 2 cut(s) 401, 423
MaeI CTAG 1 cut(s) 627
MaeII ACGT 2 cut(s) 405, 422
MaeIII GTNAC 2 cut(s) 76, 482
MalI GATC 3 cut(s) 371, 464, 540
MbiI CCGCTC 2 cut(s) 59, 596
MboI GATC 3 cut(s) 369, 462, 538
MboII GAAGA 2 cut(s) 219, 328
MflI RGATCY 1 cut(s) 462
MhlI GDGCHC 1 cut(s) 525
MluCI AATT 1 cut(s) 528
Mly113I GGCGCC 1 cut(s) 305
MmeI TCCRAC 3 cut(s) 114, 306, 388
MnlI CCTC 7 cut(s) 15, 64, 75, 235, 352, 353, 579
Mph1103I ATGCAT 1 cut(s) 416
MspA1I CMGCKG 1 cut(s) 614
MspI CCGG 3 cut(s) 196, 201, 210
MspR9I CCNGG 6 cut(s) 107, 169, 186, 197, 210, 467
MteI GCGCNGCGC 1 cut(s) 163
MvaI CCWGG 4 cut(s) 107, 169, 186, 467
MvnI CGCG 5 cut(s) 160, 180, 182, 356, 478
NarI GGCGCC 1 cut(s) 305
NciI CCSGG 2 cut(s) 197, 210
NdeI CATATG 2 cut(s) 131, 338
NdeII GATC 3 cut(s) 369, 462, 538
NlaIII CATG 1 cut(s) 398
NlaIV GGNNCC 5 cut(s) 194, 214, 306, 433, 434
NmeAIII GCCGAG 1 cut(s) 324
NmuCI GTSAC 2 cut(s) 76, 482
NsiI ATGCAT 1 cut(s) 416
NspI RCATGY 1 cut(s) 398
PauI GCGCGC 2 cut(s) 158, 180
PceI AGGCCT 1 cut(s) 224
PcsI WCGNNNNNNNCGW 4 cut(s) 360, 414, 446, 449
PfeI GAWTC 1 cut(s) 86
PluTI GGCGCC 1 cut(s) 308
PmaCI CACGTG 1 cut(s) 423
PmlI CACGTG 1 cut(s) 423
Ppu21I YACGTR 1 cut(s) 423
PpuMI RGGWCCY 2 cut(s) 256, 432
Psp124BI GAGCTC 1 cut(s) 525
Psp5II RGGWCCY 2 cut(s) 256, 432
Psp6I CCWGG 4 cut(s) 105, 167, 184, 465
PspCI CACGTG 1 cut(s) 423
PspGI CCWGG 4 cut(s) 105, 167, 184, 465
PspN4I GGNNCC 5 cut(s) 194, 214, 306, 433, 434
PspPI GGNCC 6 cut(s) 142, 193, 198, 256, 296, 432
PspPPI RGGWCCY 2 cut(s) 256, 432
PstI CTGCAG 1 cut(s) 264
PstNI CAGNNNCTG 1 cut(s) 466
PsuI RGATCY 1 cut(s) 462
PteI GCGCGC 2 cut(s) 158, 180
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
Rsr2I CGGWCCG 1 cut(s) 296
RsrII CGGWCCG 1 cut(s) 296
SacI GAGCTC 1 cut(s) 525
Sau3AI GATC 3 cut(s) 369, 462, 538
Sau96I GGNCC 6 cut(s) 142, 193, 198, 256, 296, 432
ScrFI CCNGG 6 cut(s) 107, 169, 186, 197, 210, 467
SduI GDGCHC 1 cut(s) 525
SetI ASST 6 cut(s) 83, 258, 270, 408, 425, 525
SfaNI GCATC 2 cut(s) 401, 423
SfcI CTRYAG 1 cut(s) 260
SfoI GGCGCC 1 cut(s) 306
SinI GGWCC 3 cut(s) 256, 296, 432
SpeI ACTAGT 1 cut(s) 626
Sse9I AATT 1 cut(s) 528
SseBI AGGCCT 1 cut(s) 224
SspDI GGCGCC 1 cut(s) 304
SspI AATATT 1 cut(s) 697
SspMI CTAG 1 cut(s) 627
SstI GAGCTC 1 cut(s) 525
StuI AGGCCT 1 cut(s) 224
StyD4I CCNGG 6 cut(s) 105, 167, 184, 195, 208, 465
StyI CCWWGG 2 cut(s) 81, 582
TaaI ACNGT 1 cut(s) 300
TaiI ACGT 2 cut(s) 408, 425
TaqI TCGA 1 cut(s) 417
TasI AATT 1 cut(s) 528
TfiI GAWTC 1 cut(s) 86
TscAI CASTG 1 cut(s) 392
TseFI GTSAC 2 cut(s) 76, 482
TseI GCWGC 8 cut(s) 162, 172, 262, 265, 563, 614, 639, 642
Tsp45I GTSAC 2 cut(s) 76, 482
TspDTI ATGAA 2 cut(s) 59, 268
TspGWI ACGGA 1 cut(s) 438
TspRI CASTG 1 cut(s) 392
VpaK11BI GGWCC 3 cut(s) 256, 296, 432
XapI RAATTY 1 cut(s) 528
XceI RCATGY 1 cut(s) 398
XspI CTAG 1 cut(s) 627
Zsp2I ATGCAT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.