Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004936

Physical Location & Seq

Genomic Coordinates Reverse (-)

50573585 .. 50575008

Gene Structure 1424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0395000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAACGCGGCTGAGAGGAGCTCGCGGCTCCGGCGATGGAGCCGCTCGACTGGAAGTTTTCTCAGGTTTTTGGAGAATAGACCGCCGGCGAGGAAGTTCAGGAAGGTACTCTTCTCGATTCTTTCCTTTCGTTTTTGGGCTGGTGAGCTAACTGCTGCCAAAATTAATAACCTGATGTACATTGTGGGAAATCCCCGTCAGTTCAAGATCCCTGACTGGTTTCTCAACACAAAGAAGGATTACAATGATGGAATCACCGTGGTGTTCGACACTACTAGGGCCTTTGTGTGCTTGGACAACACAGCAAGACCATTGGCCACAGGGGGAAGACTATTGGAGTGTCCAAGAAGCGTTGAAGAACATATTTTGGCTGTTTGGGAGCATGTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 ko05134 map04130 map04145 map05134

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

130

Amino Acids

15.15

Weight (kDa)

10.4

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	47 - 86	6.2e-06	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11890
fragaria_vesca	FvH4_6g35230
malus_domestica	MD09G1177400.v1.1 MD17G1149000.v1.1
prunus_persica	Prupe.3G036800_v2.0.a1 Prupe.3G036800_v2.0.a1 Prupe.3G036800_v2.0.a1
pyrus_communis	pycom09g09560 pycom17g14280
rosa_chinensis	RchiOBHm_Chr2g0091761 RchiOBHm_Chr2g0146571
rosa_laevigata	RLG00000020208
rosa_multiflora	Rmu_sc0001986.1_g000029
rosa_roxburghii	Rroxscaffold_1G00025120 Rroxscaffold_2G00091680 Rroxscaffold_2G00100030
rosa_rugosa	Rorug02G0107300 Rorug02G0107300 Rorug02G0107400 Rorug02G0107500 Rorug02G0394800 Rorug02G0394800 Rorug02G0394900 Rorug02G0395000
rosa_samantha	Rh2AG451700 Rh2BG464500 Rh2CG438600 Rh2DG473500 Rh6AG134600
rosa_wichuraiana	Rw2G036900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	45
AccII	CGCG	2 cut(s)	8, 25
AciI	CCGC	4 cut(s)	8, 25, 43, 83
AclWI	GGATC	1 cut(s)	202
AcoI	YGGCCR	1 cut(s)	315
AfaI	GTAC	2 cut(s)	108, 179
AgsI	TTSAA	2 cut(s)	205, 356
AleI	CACNNNNGTG	1 cut(s)	260
AluBI	AGCT	2 cut(s)	21, 148
AluI	AGCT	2 cut(s)	21, 148
Alw21I	GWGCWC	1 cut(s)	23
AlwI	GGATC	1 cut(s)	202
AoxI	GGCC	2 cut(s)	279, 315
ApeKI	GCWGC	1 cut(s)	155
AseI	ATTAAT	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	279
AsuHPI	GGTGA	2 cut(s)	155, 247
BalI	TGGCCA	1 cut(s)	317
BanII	GRGCYC	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	334
Bbv12I	GWGCWC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	2 cut(s)	30, 242
BfaI	CTAG	1 cut(s)	276
BisI	GCNGC	4 cut(s)	9, 26, 43, 156
BlsI	GCNGC	4 cut(s)	10, 27, 44, 157
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	2 cut(s)	29, 41
BpiI	GAAGAC	1 cut(s)	334
BplI	GAGNNNNNCTC	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	258
Bse118I	RCCGGY	1 cut(s)	85
Bse1I	ACTGG	2 cut(s)	55, 221
BseDI	CCNNGG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	76
BseNI	ACTGG	2 cut(s)	55, 221
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	142
Bsh1236I	CGCG	2 cut(s)	8, 25
BshFI	GGCC	2 cut(s)	281, 317
BsiHKAI	GWGCWC	1 cut(s)	23
BsiSI	CCGG	2 cut(s)	31, 86
BsnI	GGCC	2 cut(s)	281, 317
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp1407I	TGTACA	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	207
BspACI	CCGC	4 cut(s)	8, 25, 43, 83
BspANI	GGCC	2 cut(s)	281, 317
BspCNI	CTCAG	2 cut(s)	4, 75
BspFNI	CGCG	2 cut(s)	8, 25
BspLI	GGNNCC	2 cut(s)	29, 41
BspPI	GGATC	1 cut(s)	202
BsrBI	CCGCTC	1 cut(s)	45
BsrFI	RCCGGY	1 cut(s)	85
BsrGI	TGTACA	1 cut(s)	177
BsrI	ACTGG	2 cut(s)	55, 221
BssAI	RCCGGY	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	1 cut(s)	116
BstAUI	TGTACA	1 cut(s)	177
BstC8I	GCNNGC	2 cut(s)	23, 87
BstDEI	CTNAG	2 cut(s)	12, 62
BstDSI	CCRYGG	1 cut(s)	258
BstFNI	CGCG	2 cut(s)	8, 25
BstKTI	GATC	1 cut(s)	210
BstMBI	GATC	1 cut(s)	207
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNSI	RCATGY	1 cut(s)	386
BstUI	CGCG	2 cut(s)	8, 25
BstV1I	GCAGC	1 cut(s)	142
BstV2I	GAAGAC	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	281, 317
BtgI	CCRYGG	1 cut(s)	258
BtgZI	GCGATG	1 cut(s)	49
Cac8I	GCNNGC	2 cut(s)	23, 87
Cfr10I	RCCGGY	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	279
Csp6I	GTAC	2 cut(s)	107, 178
CviAII	CATG	2 cut(s)	383, 388
CviJI	RGCY	9 cut(s)	11, 21, 28, 42, 140, 148, 281, 317, 371
CviKI_1	RGCY	9 cut(s)	11, 21, 28, 42, 140, 148, 281, 317, 371
CviQI	GTAC	2 cut(s)	107, 178
DdeI	CTNAG	2 cut(s)	12, 62
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
EaeI	YGGCCR	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Ecl136II	GAGCTC	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	23
Eco53kI	GAGCTC	1 cut(s)	21
EcoICRI	GAGCTC	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	23
FaeI	CATG	2 cut(s)	386, 391
FaiI	YATR	3 cut(s)	363, 384, 389
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FatI	CATG	2 cut(s)	382, 387
Fnu4HI	GCNGC	4 cut(s)	9, 26, 43, 156
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	4 cut(s)	9, 26, 43, 156
FspBI	CTAG	1 cut(s)	276
GluI	GCNGC	4 cut(s)	9, 26, 43, 156
HaeIII	GGCC	2 cut(s)	281, 317
HapII	CCGG	2 cut(s)	31, 86
Hin1II	CATG	2 cut(s)	386, 391
HinfI	GANTC	2 cut(s)	118, 252
HpaII	CCGG	2 cut(s)	31, 86
HphI	GGTGA	2 cut(s)	155, 247
Hpy188III	TCNNGA	3 cut(s)	100, 115, 205
HpyAV	CCTTC	2 cut(s)	97, 229
HpyCH4III	ACNGT	1 cut(s)	259
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	2 cut(s)	12, 62
Hsp92II	CATG	2 cut(s)	386, 391
KroI	GCCGGC	1 cut(s)	85
KroNI	GCCGGC	1 cut(s)	87
Kzo9I	GATC	1 cut(s)	207
LmnI	GCTCC	4 cut(s)	18, 33, 39, 379
Lsp1109I	GCAGC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	276
MalI	GATC	1 cut(s)	209
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	1 cut(s)	207
MboII	GAAGA	3 cut(s)	103, 339, 368
MflI	RGATCY	1 cut(s)	207
MhlI	GDGCHC	1 cut(s)	23
MlsI	TGGCCA	1 cut(s)	317
MluCI	AATT	1 cut(s)	162
MluNI	TGGCCA	1 cut(s)	317
MnlI	CCTC	2 cut(s)	9, 84
Mox20I	TGGCCA	1 cut(s)	317
MreI	CGCCGGCG	1 cut(s)	85
MroNI	GCCGGC	1 cut(s)	85
MscI	TGGCCA	1 cut(s)	317
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	260
Msp20I	TGGCCA	1 cut(s)	317
MspI	CCGG	2 cut(s)	31, 86
MvnI	CGCG	2 cut(s)	8, 25
MwoI	GCNNNNNNNGC	1 cut(s)	31
NaeI	GCCGGC	1 cut(s)	87
NdeII	GATC	1 cut(s)	207
NgoMIV	GCCGGC	1 cut(s)	85
NlaIII	CATG	2 cut(s)	386, 391
NlaIV	GGNNCC	2 cut(s)	29, 41
NspI	RCATGY	1 cut(s)	386
OliI	CACNNNNGTG	1 cut(s)	260
PdiI	GCCGGC	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	118, 252
PkrI	GCNGC	4 cut(s)	10, 27, 44, 157
PshBI	ATTAAT	1 cut(s)	165
Psp124BI	GAGCTC	1 cut(s)	23
PspN4I	GGNNCC	2 cut(s)	29, 41
PspPI	GGNCC	1 cut(s)	279
PsuI	RGATCY	1 cut(s)	207
RsaI	GTAC	2 cut(s)	108, 179
RsaNI	GTAC	2 cut(s)	107, 178
RseI	CAYNNNNRTG	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	4 cut(s)	9, 26, 43, 156
Sau3AI	GATC	1 cut(s)	207
Sau96I	GGNCC	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	5 cut(s)	23, 68, 108, 150, 174
SgrAI	CRCCGGYG	1 cut(s)	85
SmiMI	CAYNNNNRTG	1 cut(s)	260
Sse9I	AATT	1 cut(s)	162
SsiI	CCGC	4 cut(s)	8, 25, 43, 83
SspMI	CTAG	1 cut(s)	276
SstI	GAGCTC	1 cut(s)	23
TaaI	ACNGT	1 cut(s)	259
TaqI	TCGA	3 cut(s)	47, 116, 267
TasI	AATT	1 cut(s)	162
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	3 cut(s)	11, 28, 45
TfiI	GAWTC	2 cut(s)	118, 252
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseI	GCWGC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	17
VspI	ATTAAT	1 cut(s)	165
XceI	RCATGY	1 cut(s)	386
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.