Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004936

Physical Location & Seq

Genomic Coordinates Forward (+)

7728557 .. 7730332

Gene Structure 1776 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g09560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGATTGCTCGTGTTACTGACGGTCTTCCACTAGCAGAGGGACTGGATGATGGCCGTGATGTAAAAGACTCTGAATTCTACAAACAACAAGTCAAGGCTTTATTCAAGAACTTATCAACGGGACAAAATGAGCCTTCAAGGATGTCAGTTGAAACTGGACCTTTTGTTTTCCACTATATCATCGAAGGACGTGTGTGTTACCTGACAATGTGTGACCGTGCCTATCCAAAGAAACTTGCCTTCCAATACCTTGAAGATCTCAAGAATGAGTTTGAGCGTGTTAATGGGACCCAAATTGAAACTGCTGCAAGACCTTATGCATTCATTAAATTCGATACATTCATACAGAAAACAAAGAAATTGTACCAGGACACTCGCACTCAGCGGAATATTGCAAAGTTGAATGATGAGCTGTATGAAGTTCACCAAATAATGACTCGCAATGTTCAGGAAGTGCTTGGTGTTGGTGAAAAGTTGGACCAGGTCAGTCAAATGTCGAGCCGTTTAACATCAGAATCTCGCATATATGCTGATAAAGCAAGAGATTTGAATCGACAGGCTCTGATCCGAAAGTACGCGCCTATTGCCATTGTGCTTGGAGTTGTTTTCCTCCTTTTCTGGGTCAAAACAAAGCTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 ko05134 map04130 map04145 map05134

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

214

Amino Acids

24.75

Weight (kDa)

9.08

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	32 - 113	1.5e-25	Regulated-SNARE-like domain
Synaptobrevin	PF00957	130 - 208	1.6e-18	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11890
fragaria_vesca	FvH4_6g35230
malus_domestica	MD09G1177400.v1.1 MD17G1149000.v1.1
prunus_persica	Prupe.3G036800_v2.0.a1 Prupe.3G036800_v2.0.a1 Prupe.3G036800_v2.0.a1
pyrus_communis	pycom09g09560 pycom17g14280
rosa_chinensis	RchiOBHm_Chr2g0091761 RchiOBHm_Chr2g0146571
rosa_laevigata	RLG00000020208
rosa_multiflora	Rmu_sc0001986.1_g000029
rosa_roxburghii	Rroxscaffold_1G00025120 Rroxscaffold_2G00091680 Rroxscaffold_2G00100030
rosa_rugosa	Rorug02G0107300 Rorug02G0107300 Rorug02G0107400 Rorug02G0107500 Rorug02G0394800 Rorug02G0394800 Rorug02G0394900 Rorug02G0395000
rosa_samantha	Rh2AG451700 Rh2BG464500 Rh2CG438600 Rh2DG473500 Rh6AG134600
rosa_wichuraiana	Rw2G036900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	578
AciI	CCGC	1 cut(s)	385
AclWI	GGATC	1 cut(s)	559
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	2 cut(s)	74, 329
AfaI	GTAC	2 cut(s)	365, 575
AfiI	CCNNNNNNNGG	1 cut(s)	619
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	7 cut(s)	106, 138, 152, 254, 299, 403, 550
AjiI	CACGTC	1 cut(s)	191
AjnI	CCWGG	2 cut(s)	366, 480
AluBI	AGCT	2 cut(s)	412, 634
AluI	AGCT	2 cut(s)	412, 634
AlwI	GGATC	1 cut(s)	559
AlwNI	CAGNNNCTG	1 cut(s)	562
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	305
ApoI	RAATTY	2 cut(s)	74, 329
ArsI	GACNNNNNNTTYG	2 cut(s)	75, 107
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	3 cut(s)	158, 288, 478
AsuHPI	GGTGA	2 cut(s)	416, 479
AvaII	GGWCC	3 cut(s)	158, 288, 478
BauI	CACGAG	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	292
BccI	CCATC	1 cut(s)	44
BceAI	ACGGC	2 cut(s)	39, 486
BciT130I	CCWGG	2 cut(s)	368, 482
BfaI	CTAG	1 cut(s)	32
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	307
Bme1390I	CCNGG	2 cut(s)	368, 482
Bme18I	GGWCC	3 cut(s)	158, 288, 478
BmgBI	CACGTC	1 cut(s)	191
BmgT120I	GGNCC	3 cut(s)	158, 288, 478
BmiI	GGNNCC	2 cut(s)	289, 290
BmrFI	CCNGG	2 cut(s)	368, 482
BpiI	GAAGAC	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	245
BsaBI	GATNNNNATC	1 cut(s)	549
Bsc4I	CCNNNNNNNGG	1 cut(s)	619
Bse1I	ACTGG	2 cut(s)	48, 160
Bse3DI	GCAATG	1 cut(s)	448
Bse8I	GATNNNNATC	1 cut(s)	549
BseBI	CCWGG	2 cut(s)	368, 482
BseGI	GGATG	2 cut(s)	52, 147
BseJI	GATNNNNATC	1 cut(s)	549
BseLI	CCNNNNNNNGG	1 cut(s)	619
BseMI	GCAATG	1 cut(s)	448
BseMII	CTCAG	1 cut(s)	395
BseNI	ACTGG	2 cut(s)	48, 160
BseXI	GCAGC	1 cut(s)	292
Bsh1236I	CGCG	1 cut(s)	578
BshFI	GGCC	1 cut(s)	54
BslFI	GGGAC	3 cut(s)	54, 135, 301
BslI	CCNNNNNNNGG	1 cut(s)	619
BsmFI	GGGAC	3 cut(s)	54, 135, 301
BsmI	GAATGC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	54
Bsp143I	GATC	2 cut(s)	256, 564
BspACI	CCGC	1 cut(s)	385
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	1 cut(s)	394
BspFNI	CGCG	1 cut(s)	578
BspLI	GGNNCC	2 cut(s)	289, 290
BspPI	GGATC	1 cut(s)	559
BsrDI	GCAATG	1 cut(s)	448
BsrI	ACTGG	2 cut(s)	48, 160
BssMI	GATC	2 cut(s)	256, 564
BssSI	CACGAG	1 cut(s)	9
Bst2BI	CACGAG	1 cut(s)	9
Bst2UI	CCWGG	2 cut(s)	368, 482
Bst4CI	ACNGT	2 cut(s)	23, 218
BstDEI	CTNAG	1 cut(s)	381
BstF5I	GGATG	2 cut(s)	52, 147
BstFNI	CGCG	1 cut(s)	578
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	2 cut(s)	259, 567
BstMBI	GATC	2 cut(s)	256, 564
BstMWI	GCNNNNNNNGC	2 cut(s)	536, 584
BstNI	CCWGG	2 cut(s)	368, 482
BstSCI	CCNGG	2 cut(s)	366, 480
BstUI	CGCG	1 cut(s)	578
BstV1I	GCAGC	1 cut(s)	292
BstV2I	GAAGAC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	54
BtrI	CACGTC	1 cut(s)	191
BtsCI	GGATG	2 cut(s)	52, 147
CaiI	CAGNNNCTG	1 cut(s)	562
CfoI	GCGC	1 cut(s)	580
Cfr13I	GGNCC	3 cut(s)	158, 288, 478
CsiI	ACCWGGT	1 cut(s)	480
Csp6I	GTAC	2 cut(s)	364, 574
CviJI	RGCY	7 cut(s)	54, 98, 133, 412, 501, 560, 634
CviKI_1	RGCY	7 cut(s)	54, 98, 133, 412, 501, 560, 634
CviQI	GTAC	2 cut(s)	364, 574
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	2 cut(s)	258, 566
DpnII	GATC	2 cut(s)	256, 564
EaeI	YGGCCR	1 cut(s)	52
Eco47I	GGWCC	3 cut(s)	158, 288, 478
EcoO109I	RGGNCCY	1 cut(s)	288
EcoRI	GAATTC	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	366, 480
EcoT22I	ATGCAT	1 cut(s)	322
FaiI	YATR	7 cut(s)	177, 318, 344, 417, 524, 526, 528
FaqI	GGGAC	3 cut(s)	54, 135, 301
Fnu4HI	GCNGC	1 cut(s)	306
FokI	GGATG	2 cut(s)	59, 154
Fsp4HI	GCNGC	1 cut(s)	306
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	54
HhaI	GCGC	1 cut(s)	580
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HinfI	GANTC	4 cut(s)	68, 436, 515, 550
HphI	GGTGA	2 cut(s)	416, 479
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	4 cut(s)	73, 514, 564, 569
Hpy188III	TCNNGA	3 cut(s)	106, 262, 449
Hpy8I	GTNNAC	1 cut(s)	424
HpyAV	CCTTC	3 cut(s)	144, 179, 250
HpyCH4III	ACNGT	2 cut(s)	23, 218
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	3 cut(s)	308, 320, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	536, 584
HpyF3I	CTNAG	1 cut(s)	381
HpySE526I	ACGT	1 cut(s)	190
HspAI	GCGC	1 cut(s)	578
KflI	GGGWCCC	1 cut(s)	288
Kzo9I	GATC	2 cut(s)	256, 564
Lsp1109I	GCAGC	1 cut(s)	292
MabI	ACCWGGT	1 cut(s)	480
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	3 cut(s)	13, 197, 212
MalI	GATC	2 cut(s)	258, 566
MboI	GATC	2 cut(s)	256, 564
MboII	GAAGA	2 cut(s)	17, 266
MflI	RGATCY	1 cut(s)	256
MluCI	AATT	4 cut(s)	74, 294, 329, 359
MlyI	GAGTC	2 cut(s)	62, 430
MmeI	TCCRAC	1 cut(s)	456
MnlI	CCTC	2 cut(s)	31, 620
Mph1103I	ATGCAT	1 cut(s)	322
MseI	TTAA	3 cut(s)	282, 327, 506
MspA1I	CMGCKG	1 cut(s)	385
MspR9I	CCNGG	2 cut(s)	368, 482
Mva1269I	GAATGC	1 cut(s)	320
MvaI	CCWGG	2 cut(s)	368, 482
MvnI	CGCG	1 cut(s)	578
MwoI	GCNNNNNNNGC	2 cut(s)	536, 584
NdeII	GATC	2 cut(s)	256, 564
NlaIV	GGNNCC	2 cut(s)	289, 290
NmuCI	GTSAC	1 cut(s)	212
NsiI	ATGCAT	1 cut(s)	322
PctI	GAATGC	1 cut(s)	320
PfeI	GAWTC	2 cut(s)	515, 550
PflFI	GACNNNGTC	1 cut(s)	482
PkrI	GCNGC	1 cut(s)	307
PleI	GAGTC	2 cut(s)	62, 430
PpsI	GAGTC	2 cut(s)	62, 430
PpuMI	RGGWCCY	1 cut(s)	288
Psp5II	RGGWCCY	1 cut(s)	288
Psp6I	CCWGG	2 cut(s)	366, 480
PspGI	CCWGG	2 cut(s)	366, 480
PspN4I	GGNNCC	2 cut(s)	289, 290
PspPI	GGNCC	3 cut(s)	158, 288, 478
PspPPI	RGGWCCY	1 cut(s)	288
PstNI	CAGNNNCTG	1 cut(s)	562
PsuI	RGATCY	1 cut(s)	256
PsyI	GACNNNGTC	1 cut(s)	482
RsaI	GTAC	2 cut(s)	365, 575
RsaNI	GTAC	2 cut(s)	364, 574
SaqAI	TTAA	3 cut(s)	282, 327, 506
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	2 cut(s)	256, 564
Sau96I	GGNCC	3 cut(s)	158, 288, 478
SchI	GAGTC	2 cut(s)	62, 430
ScrFI	CCNGG	2 cut(s)	368, 482
SetI	ASST	8 cut(s)	163, 193, 204, 252, 316, 414, 486, 636
SexAI	ACCWGGT	1 cut(s)	480
SinI	GGWCC	3 cut(s)	158, 288, 478
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	4 cut(s)	74, 294, 329, 359
SsiI	CCGC	1 cut(s)	385
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	2 cut(s)	366, 480
TaaI	ACNGT	2 cut(s)	23, 218
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	4 cut(s)	183, 333, 497, 553
TasI	AATT	4 cut(s)	74, 294, 329, 359
TfiI	GAWTC	2 cut(s)	515, 550
Tru1I	TTAA	3 cut(s)	282, 327, 506
Tru9I	TTAA	3 cut(s)	282, 327, 506
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	3 cut(s)	313, 331, 432
Tth111I	GACNNNGTC	1 cut(s)	482
VpaK11BI	GGWCC	3 cut(s)	158, 288, 478
XapI	RAATTY	2 cut(s)	74, 329
XspI	CTAG	1 cut(s)	32
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.